ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC040701.2| Homo sapiens cDNA clone IMAGE:5736259, partial cds 42 0.15
2gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete seq... 38 2.4
3gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing... 38 2.4
4gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete se... 38 2.4
5gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete se... 38 2.4
6gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome... 38 2.4
7gb|AC147883.2| Xenopus tropicalis clone CH216-117C13, complete s... 38 2.4
8emb|BX008426.1|CNS08ENY Single read from an extremity of a full-... 38 2.4
9gb|AC147889.2| Xenopus tropicalis clone CH216-168F2, complete se... 38 2.4
10gb|AC093240.2| Homo sapiens chromosome 5 clone RP11-103P4, compl... 38 2.4
11ref|NM_066763.3| Caenorhabditis elegans R10E11.4 (Galactosyltran... 38 2.4
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.4
13gb|AC008306.3|AC008306 Drosophila melanogaster, chromosome 2R, r... 38 2.4
14gb|AC007836.5|AC007836 Drosophila melanogaster, chromosome 2R, r... 38 2.4
15emb|CR942609.1| Xenopus tropicalis finished cDNA, clone TNeu002g11 38 2.4
16gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36... 38 2.4
17gb|BC084833.1| Xenopus laevis hypothetical LOC495369, mRNA (cDNA... 38 2.4
18emb|Z29095.1|CER10E11 Caenorhabditis elegans Cosmid R10E11, comp... 38 2.4
19gb|AE000511.1| Helicobacter pylori 26695, complete genome 38 2.4
20gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome... 38 2.4
21emb|AJ005867.1|CEL005867 Caenorhabditis elegans mRNA for Sqv-3 p... 38 2.4
22gb|AC154431.2| Mus musculus BAC clone RP23-174B22 from chromosom... 36 9.5
23gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 36 9.5
24gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complet... 36 9.5
25gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complet... 36 9.5
26emb|Z38058.1|LMCLPB L.major (MHOM/SU/5ASKH) DNA for 100 kDa heat... 36 9.5
27emb|AL604065.7| Mouse DNA sequence from clone RP23-20M18 on chro... 36 9.5
28gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete s... 36 9.5
29gb|AC078817.18| Homo sapiens 12 BAC RP11-244J10 (Roswell Park Ca... 36 9.5
30gb|AC084823.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, R... 36 9.5
31gb|AC006581.16| Homo sapiens 12 BAC RP11-259O18 (Roswell Park Ca... 36 9.5
32gb|AF200337.1|AF200337 Bartonella vinsonii subsp. berkhoffii 17k... 36 9.5
33gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complet... 36 9.5
34dbj|AK172840.1| Homo sapiens cDNA FLJ24001 fis, clone KAIA1424 36 9.5
35gb|AC154439.2| Mus musculus BAC clone RP23-182C9 from 13, comple... 36 9.5
36emb|Z72506.1|CEF07A5 Caenorhabditis elegans Cosmid F07A5, comple... 36 9.5
37gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, co... 36 9.5
38emb|AL603837.8| Mouse DNA sequence from clone RP23-254F2 on chro... 36 9.5
39emb|AL833799.8| Mouse DNA sequence from clone RP23-26L11 on chro... 36 9.5 
>gb|BC040701.2| Homo sapiens cDNA clone IMAGE:5736259, partial cds
          Length = 1276

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 40  caaaaattaaactagggaatg 60
           |||||||||||||||||||||
Sbjct: 722 caaaaattaaactagggaatg 742
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>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence
          Length = 156486

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     gttggagaagctctattaa 22
             |||||||||||||||||||
Sbjct: 39268 gttggagaagctctattaa 39286
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>gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing the bambi gene,
             complete sequence
          Length = 75688

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     gttggagaagctctattaa 22
             |||||||||||||||||||
Sbjct: 46719 gttggagaagctctattaa 46701
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>gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete sequence
          Length = 184109

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 4      gttggagaagctctattaa 22
              |||||||||||||||||||
Sbjct: 105846 gttggagaagctctattaa 105828



 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     ttggagaagctctattaa 22
             ||||||||||||||||||
Sbjct: 64151 ttggagaagctctattaa 64168
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>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence
          Length = 181178

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     gttggagaagctctattaa 22
             |||||||||||||||||||
Sbjct: 88827 gttggagaagctctattaa 88845



 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      ttggagaagctctattaa 22
              ||||||||||||||||||
Sbjct: 130522 ttggagaagctctattaa 130505
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>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0079L11, complete sequence
          Length = 124104

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    aaattaaactagggaatgt 61
             |||||||||||||||||||
Sbjct: 86946 aaattaaactagggaatgt 86928
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>gb|AC147883.2| Xenopus tropicalis clone CH216-117C13, complete sequence
          Length = 165987

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    gttggagaagctctattaa 22
            |||||||||||||||||||
Sbjct: 7499 gttggagaagctctattaa 7481
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>emb|BX008426.1|CNS08ENY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA13DD12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 368

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tattaaatcggaaagaaag 35
           |||||||||||||||||||
Sbjct: 231 tattaaatcggaaagaaag 213
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>gb|AC147889.2| Xenopus tropicalis clone CH216-168F2, complete sequence
          Length = 150457

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 6    tggagaagctctattaaat 24
            |||||||||||||||||||
Sbjct: 1298 tggagaagctctattaaat 1280
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>gb|AC093240.2| Homo sapiens chromosome 5 clone RP11-103P4, complete sequence
          Length = 163673

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     aaaattaaactagggaatg 60
              |||||||||||||||||||
Sbjct: 137091 aaaattaaactagggaatg 137109
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>ref|NM_066763.3| Caenorhabditis elegans R10E11.4 (Galactosyltransferase) mRNA,
           complete cds
          Length = 1335

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 8   gagaagctctattaaatcg 26
           |||||||||||||||||||
Sbjct: 344 gagaagctctattaaatcg 326
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 43      aaattaaactagggaatgt 61
               |||||||||||||||||||
Sbjct: 1425284 aaattaaactagggaatgt 1425266
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>gb|AC008306.3|AC008306 Drosophila melanogaster, chromosome 2R, region 51B-51B, BAC clone
             BACR27M04, complete sequence
          Length = 169689

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                        
Query: 25    cggaaagaaagc-acgcaaaaattaaa 50
             |||||||||||| ||||||||||||||
Sbjct: 56029 cggaaagaaagctacgcaaaaattaaa 56003
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>gb|AC007836.5|AC007836 Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
              BACR06D02, complete sequence
          Length = 172791

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                         
Query: 25     cggaaagaaagc-acgcaaaaattaaa 50
              |||||||||||| ||||||||||||||
Sbjct: 124447 cggaaagaaagctacgcaaaaattaaa 124421
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>emb|CR942609.1| Xenopus tropicalis finished cDNA, clone TNeu002g11
          Length = 3131

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 4   gttggagaagctctattaa 22
           |||||||||||||||||||
Sbjct: 743 gttggagaagctctattaa 725
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>gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36 of 73 of the complete
              sequence
          Length = 254438

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                         
Query: 25     cggaaagaaagc-acgcaaaaattaaa 50
              |||||||||||| ||||||||||||||
Sbjct: 160303 cggaaagaaagctacgcaaaaattaaa 160277
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>gb|BC084833.1| Xenopus laevis hypothetical LOC495369, mRNA (cDNA clone MGC:85363
           IMAGE:6879817), complete cds
          Length = 1248

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 8   gagaagctctattaaatcg 26
           |||||||||||||||||||
Sbjct: 570 gagaagctctattaaatcg 552
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>emb|Z29095.1|CER10E11 Caenorhabditis elegans Cosmid R10E11, complete sequence
          Length = 32458

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gagaagctctattaaatcg 26
             |||||||||||||||||||
Sbjct: 15287 gagaagctctattaaatcg 15305
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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     agcacgcaaaaattaaact 52
              |||||||||||||||||||
Sbjct: 804511 agcacgcaaaaattaaact 804529
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>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
             complete sequence
          Length = 144455

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    aaattaaactagggaatgt 61
             |||||||||||||||||||
Sbjct: 19364 aaattaaactagggaatgt 19346
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>emb|AJ005867.1|CEL005867 Caenorhabditis elegans mRNA for Sqv-3 protein
          Length = 1164

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 8   gagaagctctattaaatcg 26
           |||||||||||||||||||
Sbjct: 353 gagaagctctattaaatcg 335
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>gb|AC154431.2| Mus musculus BAC clone RP23-174B22 from chromosome 13, complete
             sequence
          Length = 195030

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    gaaagaaagcacgcaaaa 44
             ||||||||||||||||||
Sbjct: 47009 gaaagaaagcacgcaaaa 46992
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     gaaagaaagcacgcaaaa 44
              ||||||||||||||||||
Sbjct: 508974 gaaagaaagcacgcaaaa 508957
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>gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complete sequence
          Length = 66610

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 40    caaaaattaaactaggga 57
             ||||||||||||||||||
Sbjct: 20552 caaaaattaaactaggga 20569
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>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence
          Length = 130030

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 40     caaaaattaaactaggga 57
              ||||||||||||||||||
Sbjct: 103824 caaaaattaaactaggga 103807
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>emb|Z38058.1|LMCLPB L.major (MHOM/SU/5ASKH) DNA for 100 kDa heat shock protein (Hsp100)
          Length = 5997

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   gaaagaaagcacgcaaaa 44
            ||||||||||||||||||
Sbjct: 1726 gaaagaaagcacgcaaaa 1709
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>emb|AL604065.7| Mouse DNA sequence from clone RP23-20M18 on chromosome 11 Contains the
              genes for olfactory receptors MOR255-4, -5, -6 and
              MOR125-1, the Olfr43 gene for olfactory receptor 43, six
              olfactory receptor pseudogenes, the Olfr59 gene for
              olfactory receptor 59, a glyceraldehyde-3-phosphate
              dehydrogenase (Gapd) pseudogene, the gene for a novel
              olfactory receptor, the 3' end of the gene for a novel
              protein similar to human RAP1 GTPase activating protein 1
              RAP1GA1 and two CpG islands, complete sequence
          Length = 254938

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     gaaagaaagcacgcaaaa 44
              ||||||||||||||||||
Sbjct: 100752 gaaagaaagcacgcaaaa 100735
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>gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete sequence
          Length = 134023

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 6      tggagaagctctattaaa 23
              ||||||||||||||||||
Sbjct: 118162 tggagaagctctattaaa 118145
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>gb|AC078817.18| Homo sapiens 12 BAC RP11-244J10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172802

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 47    taaactagggaatgtata 64
             ||||||||||||||||||
Sbjct: 52357 taaactagggaatgtata 52374
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>gb|AC084823.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-290L7, Complete
              Sequence, complete sequence
          Length = 212133

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     gaaagaaagcacgcaaaa 44
              ||||||||||||||||||
Sbjct: 180989 gaaagaaagcacgcaaaa 180972
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>gb|AC006581.16| Homo sapiens 12 BAC RP11-259O18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172931

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      gaagttggagaagctcta 18
              ||||||||||||||||||
Sbjct: 108242 gaagttggagaagctcta 108225
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>gb|AF200337.1|AF200337 Bartonella vinsonii subsp. berkhoffii 17kDa antigen-like protein
           gene, complete cds
          Length = 654

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 30  agaaagcacgcaaaaattaaac 51
           ||||||||| ||||||||||||
Sbjct: 125 agaaagcacacaaaaattaaac 146
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>gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complete sequence
          Length = 83007

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    ctctattaaatcggaaag 31
             ||||||||||||||||||
Sbjct: 12749 ctctattaaatcggaaag 12766
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>dbj|AK172840.1| Homo sapiens cDNA FLJ24001 fis, clone KAIA1424
          Length = 2930

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 40  caaaaattaaactaggga 57
           ||||||||||||||||||
Sbjct: 749 caaaaattaaactaggga 766
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>gb|AC154439.2| Mus musculus BAC clone RP23-182C9 from 13, complete sequence
          Length = 198048

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     gaaagaaagcacgcaaaa 44
              ||||||||||||||||||
Sbjct: 193303 gaaagaaagcacgcaaaa 193286
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>emb|Z72506.1|CEF07A5 Caenorhabditis elegans Cosmid F07A5, complete sequence
          Length = 32632

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 29    aagaaagcacgcaaaaat 46
             ||||||||||||||||||
Sbjct: 15052 aagaaagcacgcaaaaat 15069
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>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence
          Length = 231400

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    gaaagaaagcacgcaaaa 44
             ||||||||||||||||||
Sbjct: 93130 gaaagaaagcacgcaaaa 93147
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>emb|AL603837.8| Mouse DNA sequence from clone RP23-254F2 on chromosome 15, complete
              sequence
          Length = 202904

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     gaaagaaagcacgcaaaa 44
              ||||||||||||||||||
Sbjct: 192336 gaaagaaagcacgcaaaa 192319
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>emb|AL833799.8| Mouse DNA sequence from clone RP23-26L11 on chromosome 2, complete
             sequence
          Length = 208472

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 46    ttaaactagggaatgtat 63
             ||||||||||||||||||
Sbjct: 91740 ttaaactagggaatgtat 91757


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 645,363
Number of Sequences: 3902068
Number of extensions: 645363
Number of successful extensions: 43090
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 43011
Number of HSP's gapped (non-prelim): 82
length of query: 64
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 43
effective length of database: 17,151,101,840
effective search space: 737497379120
effective search space used: 737497379120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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