ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
4dbj|AP006129.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.14
5ref|XM_745684.1| Aspergillus fumigatus Af293 ubiquitin fusion de... 44 0.57
6gb|AC140355.3| Mus musculus BAC clone RP23-214D3 from chromosome... 42 2.3
7gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 42 2.3
8gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 42 2.3
9gb|AC132140.3| Mus musculus BAC clone RP23-82C19 from chromosome... 42 2.3
10ref|XM_656525.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.3
11ref|NM_145831.1| Mus musculus doublesex and mab-3 related transc... 42 2.3
12ref|XM_453794.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D16632g ... 42 2.3
13gb|AF539811.1| Mus musculus doublesex and mab-3 related transcri... 42 2.3
14gb|AC124540.4| Mus musculus BAC clone RP23-361G19 from chromosom... 42 2.3
15gb|CP000001.1| Bacillus cereus E33L, complete genome 42 2.3
16emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.3
17emb|AJ276456.1|MMU276456 Mus musculus partial ORF1 DNA for hypot... 42 2.3
18dbj|AK140347.1| Mus musculus 4 days neonate male adipose cDNA, R... 42 2.3
19dbj|AK140337.1| Mus musculus 4 days neonate male adipose cDNA, R... 42 2.3
20dbj|AK044891.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 42 2.3
21ref|XM_396782.2| PREDICTED: Apis mellifera similar to GA22028-PA... 42 2.3
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
23gb|AC079299.5| Homo sapiens BAC clone RP11-91N6 from 2, complete... 42 2.3
24dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
25gb|AC154658.2| Mus musculus BAC clone RP23-155K19 from 9, comple... 42 2.3
26gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 42 2.3
27gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, c... 40 8.9
28ref|XM_418846.1| PREDICTED: Gallus gallus similar to velo1 (LOC4... 40 8.9
29ref|XM_709563.1| Candida albicans SC5314 mannose-6-phosphate iso... 40 8.9
30ref|XM_709469.1| Candida albicans SC5314 mannose-6-phosphate iso... 40 8.9
31gb|AC160398.8| Mus musculus 6 BAC RP23-162K3 (Roswell Park Cance... 40 8.9
32gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosom... 40 8.9
33emb|CR713450.2|CNS0GDG6 Tetraodon nigroviridis full-length cDNA 40 8.9
34ref|XM_760770.1| Theileria parva strain Muguga chromosome 1 hypo... 40 8.9
35ref|XM_761094.1| Theileria parva strain Muguga chromosome 1 DNA ... 40 8.9
36gb|AE004412.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 8.9
37emb|BX842644.1| Mycoplasma mycoides subsp. mycoides SC genomic D... 40 8.9
38gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, com... 40 8.9
39dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 8.9
40gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, comp... 40 8.9
41gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, co... 40 8.9
42gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.9
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
44gb|AC012313.7| Homo sapiens chromosome 19 clone CTD-2619J13, com... 40 8.9
45dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
46ref|NM_211054.1| Eremothecium gossypii AFR153Wp (AFR153W), mRNA 40 8.9
47emb|X82024.1|CAPMI1 C.albicans PMI1 gene 40 8.9
48gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 8.9
49gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complet... 40 8.9
50gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome... 40 8.9
51dbj|AB039614.1| Pseudomonas stanieri rpoD gene for DNA-directed ... 40 8.9 
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                         
Query: 511   cctctacatcttcatcctcgctcgaataagcagaatctagtttagcatacagctcctcgt 570
             |||| |||||||| || || || |||||||||||||| ||||| ||||||| |||| | |
Sbjct: 22162 cctccacatcttcctcgtcactggaataagcagaatcaagtttggcatacaactccacat 22221

                   
Query: 571   ctcctt 576
             ||||||
Sbjct: 22222 ctcctt 22227
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 511      cctctacatcttcatcctcgctcgaataagcagaatctagtttagcatacagctcctcgt 570
                |||| |||||||| || || || |||||||||||||| ||||| ||||||| |||| | |
Sbjct: 21670109 cctccacatcttcctcgtcactggaataagcagaatcaagtttggcatacaactccacat 21670168

                      
Query: 571      ctcctt 576
                ||||||
Sbjct: 21670169 ctcctt 21670174
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 511      cctctacatcttcatcctcgctcgaataagcagaatctagtttagcatacagctcctcgt 570
                |||| |||||||| || || || |||||||||||||| ||||| ||||||| |||| | |
Sbjct: 21980308 cctccacatcttcctcgtcactggaataagcagaatcaagtttggcatacaactccacat 21980367

                      
Query: 571      ctcctt 576
                ||||||
Sbjct: 21980368 ctcctt 21980373
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>dbj|AP006129.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT27K02, TM0225,
             complete sequence
          Length = 70805

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 208   tttcgtctgattcagccccttct 230
             |||||||||||||||||||||||
Sbjct: 60097 tttcgtctgattcagccccttct 60119
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>ref|XM_745684.1| Aspergillus fumigatus Af293 ubiquitin fusion degradation protein UFD4
            (Afu6g08880) partial mRNA
          Length = 5541

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 496  catcatcgtcctcgtcctctacatcttcatcctcgctc 533
            ||||| |||||||||||||| | ||||||||| |||||
Sbjct: 3436 catcaccgtcctcgtcctcttcttcttcatccgcgctc 3399
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>gb|AC140355.3| Mus musculus BAC clone RP23-214D3 from chromosome 9, complete sequence
          Length = 221753

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 87     atttctaatgttgtctactgcgtag 111
              |||||||||||||||||||| ||||
Sbjct: 143417 atttctaatgttgtctactgtgtag 143441
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 112     accgctacatctttagtctgattca 136
               |||||| ||||||||||||||||||
Sbjct: 2061613 accgcttcatctttagtctgattca 2061589
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 112     accgctacatctttagtctgattca 136
               |||||| ||||||||||||||||||
Sbjct: 2061517 accgcttcatctttagtctgattca 2061493
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>gb|AC132140.3| Mus musculus BAC clone RP23-82C19 from chromosome 19, complete
            sequence
          Length = 278583

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 505  cctcgtcctctacatcttcatcctc 529
            |||||||||| ||||||||||||||
Sbjct: 1116 cctcgtcctccacatcttcatcctc 1140
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>ref|XM_656525.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4013.2), mRNA
          Length = 2595

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 501  tcgtcctcgtcctctacatcttcat 525
            ||||||||| |||||||||||||||
Sbjct: 2237 tcgtcctcggcctctacatcttcat 2261
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>ref|NM_145831.1| Mus musculus doublesex and mab-3 related transcription factor 2
           (Dmrt2), mRNA
          Length = 2338

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 505 cctcgtcctctacatcttcatcctc 529
           |||||||||| ||||||||||||||
Sbjct: 572 cctcgtcctccacatcttcatcctc 548
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>ref|XM_453794.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D16632g predicted mRNA
          Length = 804

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 498 tcatcgtcctcgtcctctacatcttcatc 526
           |||||||||||||| || |||||||||||
Sbjct: 302 tcatcgtcctcgtcatccacatcttcatc 274
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>gb|AF539811.1| Mus musculus doublesex and mab-3 related transcription factor 2
           (Dmrt2) mRNA, complete cds
          Length = 2333

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 505 cctcgtcctctacatcttcatcctc 529
           |||||||||| ||||||||||||||
Sbjct: 571 cctcgtcctccacatcttcatcctc 547
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>gb|AC124540.4| Mus musculus BAC clone RP23-361G19 from chromosome 19, complete
             sequence
          Length = 199168

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 505   cctcgtcctctacatcttcatcctc 529
             |||||||||| ||||||||||||||
Sbjct: 50040 cctcgtcctccacatcttcatcctc 50016
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 112     accgctacatctttagtctgattca 136
               |||||| ||||||||||||||||||
Sbjct: 2116193 accgcttcatctttagtctgattca 2116169
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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1715506

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 498     tcatcgtcctcgtcctctacatcttcatc 526
               |||||||||||||| || |||||||||||
Sbjct: 1412691 tcatcgtcctcgtcatccacatcttcatc 1412663
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>emb|AJ276456.1|MMU276456 Mus musculus partial ORF1 DNA for hypothetical protein
          Length = 538

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 505 cctcgtcctctacatcttcatcctc 529
           |||||||||| ||||||||||||||
Sbjct: 198 cctcgtcctccacatcttcatcctc 174
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>dbj|AK140347.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
           enriched library, clone:B430213J08 product:doublesex and
           mab-3 related transcription factor 2, full insert
           sequence
          Length = 2338

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 505 cctcgtcctctacatcttcatcctc 529
           |||||||||| ||||||||||||||
Sbjct: 566 cctcgtcctccacatcttcatcctc 542
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>dbj|AK140337.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
           enriched library, clone:B430208I11 product:doublesex and
           mab-3 related transcription factor 2, full insert
           sequence
          Length = 2349

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 505 cctcgtcctctacatcttcatcctc 529
           |||||||||| ||||||||||||||
Sbjct: 563 cctcgtcctccacatcttcatcctc 539
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>dbj|AK044891.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130010I06 product:similar to
           DMRT2/TERRA-LIKE PROTEIN [Homo sapiens], full insert
           sequence
          Length = 2338

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 505 cctcgtcctctacatcttcatcctc 529
           |||||||||| ||||||||||||||
Sbjct: 572 cctcgtcctccacatcttcatcctc 548
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>ref|XM_396782.2| PREDICTED: Apis mellifera similar to GA22028-PA (LOC413337), mRNA
          Length = 3751

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 571 ctccttggtcctttacgtctt 591
           |||||||||||||||||||||
Sbjct: 201 ctccttggtcctttacgtctt 181
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 494     agcatcatcgtcctcgtcctctaca 518
               ||||||||||||||| |||||||||
Sbjct: 4722895 agcatcatcgtcctcctcctctaca 4722871
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>gb|AC079299.5| Homo sapiens BAC clone RP11-91N6 from 2, complete sequence
          Length = 21427

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 596   ttggaccagttcggatctgagctga 620
             |||||||||||| ||||||||||||
Sbjct: 15423 ttggaccagttcagatctgagctga 15447
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>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0455A11
          Length = 158629

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 494   agcatcatcgtcctcgtcctctaca 518
             ||||||||||||||| |||||||||
Sbjct: 80911 agcatcatcgtcctcctcctctaca 80887
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>gb|AC154658.2| Mus musculus BAC clone RP23-155K19 from 9, complete sequence
          Length = 205427

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 87    atttctaatgttgtctactgcgtag 111
             |||||||||||||||||||| ||||
Sbjct: 50899 atttctaatgttgtctactgtgtag 50923
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 112     accgctacatctttagtctgattca 136
               |||||| ||||||||||||||||||
Sbjct: 2061489 accgcttcatctttagtctgattca 2061465
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>gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, complete sequence
          Length = 208483

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gctcgcagtcttcatcctcg 323
              ||||||||||||||||||||
Sbjct: 150885 gctcgcagtcttcatcctcg 150904
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>ref|XM_418846.1| PREDICTED: Gallus gallus similar to velo1 (LOC420748), mRNA
          Length = 3184

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 498  tcatcgtcctcgtcctctacatcttcatcctc 529
            ||||| ||||| |||||| |||||||||||||
Sbjct: 2330 tcatcctcctcatcctcttcatcttcatcctc 2299
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>ref|XM_709563.1| Candida albicans SC5314 mannose-6-phosphate isomerase (CaO19.8968),
           mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ttcatcatcagcagttgccc 462
           ||||||||||||||||||||
Sbjct: 66  ttcatcatcagcagttgccc 85
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>ref|XM_709469.1| Candida albicans SC5314 mannose-6-phosphate isomerase (CaO19.1390),
           mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ttcatcatcagcagttgccc 462
           ||||||||||||||||||||
Sbjct: 66  ttcatcatcagcagttgccc 85
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>gb|AC160398.8| Mus musculus 6 BAC RP23-162K3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 215426

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   agaatctagtttagcataca 561
             ||||||||||||||||||||
Sbjct: 81787 agaatctagtttagcataca 81768
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>gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosome 5, complete sequence
          Length = 184869

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    atgtctagctacatgatccc 73
             ||||||||||||||||||||
Sbjct: 83119 atgtctagctacatgatccc 83100
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>emb|CR713450.2|CNS0GDG6 Tetraodon nigroviridis full-length cDNA
          Length = 802

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 426 tcaatggcggtttcattttc 445
           ||||||||||||||||||||
Sbjct: 505 tcaatggcggtttcattttc 486
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>ref|XM_760770.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0336) partial mRNA
          Length = 11838

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 496  catcatcgtcctcgtcctctacatcttc 523
            ||||||||||||| |||||| |||||||
Sbjct: 3964 catcatcgtcctcctcctcttcatcttc 3937
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>ref|XM_761094.1| Theileria parva strain Muguga chromosome 1 DNA replication
           licensing factor MCM4 (TP01_0666) partial mRNA
          Length = 3051

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 cagaatctagtttagcatac 560
           ||||||||||||||||||||
Sbjct: 836 cagaatctagtttagcatac 855
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>gb|AE004412.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 69
            of 93 of the complete chromosome
          Length = 16814

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  tcagccccttcttctagggg 238
            ||||||||||||||||||||
Sbjct: 6819 tcagccccttcttctagggg 6800
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>emb|BX842644.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence;
              segment 3/4
          Length = 349402

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tgatgaatttctaatgttgt 100
              ||||||||||||||||||||
Sbjct: 321848 tgatgaatttctaatgttgt 321867
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>gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, complete sequence
          Length = 206320

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   atctagtttagcatacagct 564
             ||||||||||||||||||||
Sbjct: 52576 atctagtttagcatacagct 52595
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    ggcggtttcattttcatcat 450
              ||||||||||||||||||||
Sbjct: 794968 ggcggtttcattttcatcat 794949
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>gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, complete sequence
          Length = 175699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 545    atctagtttagcatacagct 564
              ||||||||||||||||||||
Sbjct: 100581 atctagtttagcatacagct 100562
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>gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, complete sequence
          Length = 173145

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tctagctacatggctacatg 56
             ||||||||||||||||||||
Sbjct: 57337 tctagctacatggctacatg 57318
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    gcatcatcgtcctcgtcctc 514
              ||||||||||||||||||||
Sbjct: 711355 gcatcatcgtcctcgtcctc 711336
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 496     catcatcgtcctcgtcctct 515
               ||||||||||||||||||||
Sbjct: 2315697 catcatcgtcctcgtcctct 2315716
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>gb|AC012313.7| Homo sapiens chromosome 19 clone CTD-2619J13, complete sequence
          Length = 185417

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     tctagctacatgatcccttt 76
              ||||||||||||||||||||
Sbjct: 148511 tctagctacatgatcccttt 148530
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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0007O20
          Length = 147363

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   catcatcgtcctcgtcctct 515
             ||||||||||||||||||||
Sbjct: 37498 catcatcgtcctcgtcctct 37517
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>ref|NM_211054.1| Eremothecium gossypii AFR153Wp (AFR153W), mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 495 gcatcatcgtcctcgtcctc 514
           ||||||||||||||||||||
Sbjct: 185 gcatcatcgtcctcgtcctc 166
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>emb|X82024.1|CAPMI1 C.albicans PMI1 gene
          Length = 1621

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ttcatcatcagcagttgccc 462
           ||||||||||||||||||||
Sbjct: 274 ttcatcatcagcagttgccc 293
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    agcggaatcataatcattgc 405
              ||||||||||||||||||||
Sbjct: 836826 agcggaatcataatcattgc 836807
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>gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complete sequence
          Length = 216389

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    catcatcgtcctcgtcctct 515
              ||||||||||||||||||||
Sbjct: 127950 catcatcgtcctcgtcctct 127931
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>gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome 5, complete sequence
          Length = 226382

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     atgtctagctacatgatccc 73
              ||||||||||||||||||||
Sbjct: 210638 atgtctagctacatgatccc 210619
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>dbj|AB039614.1| Pseudomonas stanieri rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:ATCC 27130
          Length = 798

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 496 catcatcgtcctcgtcctctacatcttc 523
           |||||||||||||||| ||| |||||||
Sbjct: 259 catcatcgtcctcgtcgtcttcatcttc 232


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,022,215
Number of Sequences: 3902068
Number of extensions: 5022215
Number of successful extensions: 107321
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106860
Number of HSP's gapped (non-prelim): 461
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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