Clone Information

BLAST Search Result

Clone Name	rbags13h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470521.1\| Oryza sativa (japonica cultivar-group), mRNA	353	5e-94
2	dbj\|AK066909.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	353	5e-94
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	256	9e-65
4	gb\|AC092263.7\| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom...	256	9e-65
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	256	9e-65
6	gb\|BT016860.1\| Zea mays clone Contig693 mRNA sequence	254	3e-64
7	gb\|AY106183.1\| Zea mays PCO125954 mRNA sequence	103	8e-19
8	ref\|NM_203198.1\| Arabidopsis thaliana unknown protein AT5G52410 ...	66	2e-07
9	ref\|NM_124620.2\| Arabidopsis thaliana unknown protein AT5G52410 ...	66	2e-07
10	gb\|AY074503.1\| Arabidopsis thaliana unknown protein (At5g52410) ...	66	2e-07
11	dbj\|AB019226.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	50	0.010
12	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	44	0.61
13	emb\|AL591784.1\|SME591784 Sinorhizobium meliloti 1021 complete ch...	42	2.4
14	emb\|CR937047.1\|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-...	42	2.4
15	gb\|AE017282.2\| Methylococcus capsulatus str. Bath, complete genome	42	2.4
16	gb\|AC092490.10\| Homo sapiens 12 BAC RP11-20D14 (Roswell Park Can...	42	2.4
17	dbj\|AP006671.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	42	2.4
18	gb\|AC099645.11\| Mus musculus chromosome 15, clone RP23-426G4, co...	40	9.5
19	gb\|DQ232586.1\| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ...	40	9.5
20	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	9.5
21	gb\|AC163008.9\| Mus musculus chromosome 15, clone RP23-105P11, co...	40	9.5
22	gb\|AY395198.1\| Uncultured bacterium clone Kolm16 16S ribosomal R...	40	9.5
23	gb\|BC070974.1\| Xenopus laevis hypothetical protein MGC78802, mRN...	40	9.5
24	gb\|AF388322.1\| Uncultured bacterium clone Ac64 16S ribosomal RNA...	40	9.5
25	gb\|AC113311.9\| Mus musculus chromosome 1, clone RP23-440J24, com...	40	9.5
26	emb\|AJ863242.1\| Uncultured bacterium partial 16S rRNA gene, clon...	40	9.5
27	emb\|AJ863241.1\| Uncultured bacterium partial 16S rRNA gene, clon...	40	9.5
28	gb\|AC122059.1\| Mus musculus BAC clone RP24-468J3 from 1, complet...	40	9.5
29	gb\|AC156249.2\| Xenopus tropicalis clone ISB1-238C22, complete se...	40	9.5
30	emb\|AL353900.14\| Human DNA sequence from clone RP11-202C2 on chr...	40	9.5
31	emb\|CR626927.1\| Bacteroides fragilis NCTC 9343, complete genome	40	9.5
32	gb\|AY921504.1\| Uncultured eubacterium clone AP29 16S ribosomal R...	40	9.5
33	emb\|AJ617867.1\| Uncultured bacterium 16S rRNA gene, clone D02308	40	9.5
34	emb\|AJ617866.1\| Uncultured bacterium 16S rRNA gene, clone D14422	40	9.5
35	gb\|AC087742.9\| Homo sapiens chromosome 17, clone RP11-104O19, co...	40	9.5
36	gb\|AC012417.13\| Homo sapiens chromosome 18, clone RP11-408H20, c...	40	9.5
37	gb\|AC108080.2\| Homo sapiens chromosome 5 clone CTC-315N8, comple...	40	9.5
38	gb\|AF375875.1\|AF375875 Homo sapiens sodium dependendent vitamin ...	40	9.5
39	gb\|AC074011.5\| Homo sapiens BAC clone RP11-780J6 from 2, complet...	40	9.5
40	gb\|AC135457.2\| Homo sapiens chromosome 5 clone RP11-1280I22, com...	40	9.5
41	gb\|AC108667.9\| Homo sapiens 3 BAC RP11-816B4 (Roswell Park Cance...	40	9.5
42	dbj\|AP006841.1\| Bacteroides fragilis YCH46 DNA, complete genome	40	9.5
43	emb\|BX248985.6\| Zebrafish DNA sequence from clone CH211-192N18 i...	40	9.5
44	emb\|Z23587.1\|HS210VA7 H. sapiens (D3S1556) DNA segment containin...	40	9.5
45	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	9.5
46	gb\|DQ268539.1\| Cryptococcus neoformans var. grubii strain H99 eu...	40	9.5
47	gb\|AY921870.1\| Uncultured Verrucomicrobia bacterium clone AKYG38...	40	9.5
48	gb\|AC163626.5\| Mus musculus BAC clone RP23-137D2 from chromosome...	40	9.5

>ref|XM_470521.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score =  353 bits (178), Expect = 5e-94
 Identities = 349/406 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  ttgagatcaaggacctcacatactgcattactctctccagggcatggctggatcggactt 333
            ||||||| || |||||||||| ||| |||||||||||||||| |||||  || |||||||
Sbjct: 2605 ttgagatgaaagacctcacatgctgtattactctctccagggaatggcaagaccggactt 2546

                                                                        
Query: 334  tcatctcaccagcaaacgacttgagcttctccagcagggactccgcccggttgattgcct 393
            | |||||| |||  |  ||||| |||||||||||||  ||| | || ||||| ||||| |
Sbjct: 2545 ttatctcagcagacattgacttcagcttctccagcaaagacccagctcggttaattgctt 2486

                                                                        
Query: 394  cgtcaactgggtgttctttgccagcattagcccatgtcactccggccgatgcatcctcct 453
            |||||||| | ||||||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 2485 cgtcaacttgatgttctttgccagcattggcccatgtgactccagctgatgcatcatctt 2426

                                                                        
Query: 454  caagccctgcgtcaacgacaactttgatcccttgtcgctcccactggttccgggcctcct 513
            |||||||| | ||||| ||||| ||||| || || |||||||| ||||||||||| ||||
Sbjct: 2425 caagccctccttcaacaacaaccttgattccatgacgctcccattggttccgggcttcct 2366

                                                                        
Query: 514  caagggcacgagcatgctccctggccttctttgcttcatcctctgcccaagccctggcca 573
            ||||||| |  ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2365 caagggccctggcatgctccctggccttctttgcttcatcctctgcccaagcccgggcca 2306

                                                                        
Query: 574  tagacaaagccttcctttcaacttcaagctcatactgaagttgcacagcagcctggtttt 633
            | || ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||  | |
Sbjct: 2305 ttgataaagccttcctctcaacttcaagttcatattgaagctgcacaacagcctgtctgt 2246

                                                          
Query: 634  cattctcgatttccttttgaagtttctcaatcctgttcttctcaaa 679
            ||||||| |||||| |||| |||||||||||||| |||||||||||
Sbjct: 2245 cattctctatttccgtttggagtttctcaatcctattcttctcaaa 2200



 Score =  117 bits (59), Expect = 5e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                        
Query: 91   gctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccacta 150
            |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 2809 gctagtctgtcttgaatctgtgtacaaacttctccaggccctctttgcagtcctccacca 2750

                               
Query: 151  ccttcttcgacttgtcccc 169
            || |||||||||| |||||
Sbjct: 2749 ccctcttcgacttatcccc 2731



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 192  gcttctgatgacagcttctttgcctttgaggctgcagcagccccaagatctg 243
            ||||| ||||||| ||||||||||||  | |||||||||||||| |||||||
Sbjct: 2696 gcttcggatgacaacttctttgccttcaaagctgcagcagcccctagatctg 2645

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>dbj|AK066909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091E19, full
            insert sequence
          Length = 3145

 Score =  353 bits (178), Expect = 5e-94
 Identities = 349/406 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  ttgagatcaaggacctcacatactgcattactctctccagggcatggctggatcggactt 333
            ||||||| || |||||||||| ||| |||||||||||||||| |||||  || |||||||
Sbjct: 2692 ttgagatgaaagacctcacatgctgtattactctctccagggaatggcaagaccggactt 2633

                                                                        
Query: 334  tcatctcaccagcaaacgacttgagcttctccagcagggactccgcccggttgattgcct 393
            | |||||| |||  |  ||||| |||||||||||||  ||| | || ||||| ||||| |
Sbjct: 2632 ttatctcagcagacattgacttcagcttctccagcaaagacccagctcggttaattgctt 2573

                                                                        
Query: 394  cgtcaactgggtgttctttgccagcattagcccatgtcactccggccgatgcatcctcct 453
            |||||||| | ||||||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 2572 cgtcaacttgatgttctttgccagcattggcccatgtgactccagctgatgcatcatctt 2513

                                                                        
Query: 454  caagccctgcgtcaacgacaactttgatcccttgtcgctcccactggttccgggcctcct 513
            |||||||| | ||||| ||||| ||||| || || |||||||| ||||||||||| ||||
Sbjct: 2512 caagccctccttcaacaacaaccttgattccatgacgctcccattggttccgggcttcct 2453

                                                                        
Query: 514  caagggcacgagcatgctccctggccttctttgcttcatcctctgcccaagccctggcca 573
            ||||||| |  ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2452 caagggccctggcatgctccctggccttctttgcttcatcctctgcccaagcccgggcca 2393

                                                                        
Query: 574  tagacaaagccttcctttcaacttcaagctcatactgaagttgcacagcagcctggtttt 633
            | || ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||  | |
Sbjct: 2392 ttgataaagccttcctctcaacttcaagttcatattgaagctgcacaacagcctgtctgt 2333

                                                          
Query: 634  cattctcgatttccttttgaagtttctcaatcctgttcttctcaaa 679
            ||||||| |||||| |||| |||||||||||||| |||||||||||
Sbjct: 2332 cattctctatttccgtttggagtttctcaatcctattcttctcaaa 2287



 Score =  117 bits (59), Expect = 5e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                        
Query: 91   gctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccacta 150
            |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 2896 gctagtctgtcttgaatctgtgtacaaacttctccaggccctctttgcagtcctccacca 2837

                               
Query: 151  ccttcttcgacttgtcccc 169
            || |||||||||| |||||
Sbjct: 2836 ccctcttcgacttatcccc 2818



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 192  gcttctgatgacagcttctttgcctttgaggctgcagcagccccaagatctg 243
            ||||| ||||||| ||||||||||||  | |||||||||||||| |||||||
Sbjct: 2783 gcttcggatgacaacttctttgccttcaaagctgcagcagcccctagatctg 2732

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  256 bits (129), Expect = 9e-65
 Identities = 255/297 (85%)
 Strand = Plus / Minus

                                                                            
Query: 274      ttgagatcaaggacctcacatactgcattactctctccagggcatggctggatcggactt 333
                ||||||| || |||||||||| ||| |||||||||||||||| |||||  || |||||||
Sbjct: 36097250 ttgagatgaaagacctcacatgctgtattactctctccagggaatggcaagaccggactt 36097191

                                                                            
Query: 334      tcatctcaccagcaaacgacttgagcttctccagcagggactccgcccggttgattgcct 393
                | |||||| |||  |  ||||| |||||||||||||  ||| | || ||||| ||||| |
Sbjct: 36097190 ttatctcagcagacattgacttcagcttctccagcaaagacccagctcggttaattgctt 36097131

                                                                            
Query: 394      cgtcaactgggtgttctttgccagcattagcccatgtcactccggccgatgcatcctcct 453
                |||||||| | ||||||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 36097130 cgtcaacttgatgttctttgccagcattggcccatgtgactccagctgatgcatcatctt 36097071

                                                                            
Query: 454      caagccctgcgtcaacgacaactttgatcccttgtcgctcccactggttccgggcctcct 513
                |||||||| | ||||| ||||| ||||| || || |||||||| ||||||||||| ||||
Sbjct: 36097070 caagccctccttcaacaacaaccttgattccatgacgctcccattggttccgggcttcct 36097011

                                                                         
Query: 514      caagggcacgagcatgctccctggccttctttgcttcatcctctgcccaagccctgg 570
                ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36097010 caagggccctggcatgctccctggccttctttgcttcatcctctgcccaagccctgg 36096954



 Score =  117 bits (59), Expect = 5e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                            
Query: 91       gctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccacta 150
                |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 36097454 gctagtctgtcttgaatctgtgtacaaacttctccaggccctctttgcagtcctccacca 36097395

                                   
Query: 151      ccttcttcgacttgtcccc 169
                || |||||||||| |||||
Sbjct: 36097394 ccctcttcgacttatcccc 36097376



 Score =  109 bits (55), Expect = 1e-20
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                            
Query: 569      ggccatagacaaagccttcctttcaacttcaagctcatactgaagttgcacagcagcctg 628
                |||||| || ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 36096210 ggccattgataaagccttcctctcaacttcaagttcatattgaagctgcacaacagcctg 36096151

                                                                   
Query: 629      gttttcattctcgatttccttttgaagtttctcaatcctgttcttctcaaa 679
                  | |||||||| |||||| |||| |||||||||||||| |||||||||||
Sbjct: 36096150 tctgtcattctctatttccgtttggagtttctcaatcctattcttctcaaa 36096100



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 192      gcttctgatgacagcttctttgcctttgaggctgcagcagccccaagatctg 243
                ||||| ||||||| ||||||||||||  | |||||||||||||| |||||||
Sbjct: 36097341 gcttcggatgacaacttctttgccttcaaagctgcagcagcccctagatctg 36097290

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>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
              sequence
          Length = 164179

 Score =  256 bits (129), Expect = 9e-65
 Identities = 255/297 (85%)
 Strand = Plus / Minus

                                                                          
Query: 274    ttgagatcaaggacctcacatactgcattactctctccagggcatggctggatcggactt 333
              ||||||| || |||||||||| ||| |||||||||||||||| |||||  || |||||||
Sbjct: 158761 ttgagatgaaagacctcacatgctgtattactctctccagggaatggcaagaccggactt 158702

                                                                          
Query: 334    tcatctcaccagcaaacgacttgagcttctccagcagggactccgcccggttgattgcct 393
              | |||||| |||  |  ||||| |||||||||||||  ||| | || ||||| ||||| |
Sbjct: 158701 ttatctcagcagacattgacttcagcttctccagcaaagacccagctcggttaattgctt 158642

                                                                          
Query: 394    cgtcaactgggtgttctttgccagcattagcccatgtcactccggccgatgcatcctcct 453
              |||||||| | ||||||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 158641 cgtcaacttgatgttctttgccagcattggcccatgtgactccagctgatgcatcatctt 158582

                                                                          
Query: 454    caagccctgcgtcaacgacaactttgatcccttgtcgctcccactggttccgggcctcct 513
              |||||||| | ||||| ||||| ||||| || || |||||||| ||||||||||| ||||
Sbjct: 158581 caagccctccttcaacaacaaccttgattccatgacgctcccattggttccgggcttcct 158522

                                                                       
Query: 514    caagggcacgagcatgctccctggccttctttgcttcatcctctgcccaagccctgg 570
              ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158521 caagggccctggcatgctccctggccttctttgcttcatcctctgcccaagccctgg 158465



 Score =  117 bits (59), Expect = 5e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                          
Query: 91     gctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccacta 150
              |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 158965 gctagtctgtcttgaatctgtgtacaaacttctccaggccctctttgcagtcctccacca 158906

                                 
Query: 151    ccttcttcgacttgtcccc 169
              || |||||||||| |||||
Sbjct: 158905 ccctcttcgacttatcccc 158887



 Score =  109 bits (55), Expect = 1e-20
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                          
Query: 569    ggccatagacaaagccttcctttcaacttcaagctcatactgaagttgcacagcagcctg 628
              |||||| || ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 157721 ggccattgataaagccttcctctcaacttcaagttcatattgaagctgcacaacagcctg 157662

                                                                 
Query: 629    gttttcattctcgatttccttttgaagtttctcaatcctgttcttctcaaa 679
                | |||||||| |||||| |||| |||||||||||||| |||||||||||
Sbjct: 157661 tctgtcattctctatttccgtttggagtttctcaatcctattcttctcaaa 157611



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                  
Query: 192    gcttctgatgacagcttctttgcctttgaggctgcagcagccccaagatctg 243
              ||||| ||||||| ||||||||||||  | |||||||||||||| |||||||
Sbjct: 158852 gcttcggatgacaacttctttgccttcaaagctgcagcagcccctagatctg 158801

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  256 bits (129), Expect = 9e-65
 Identities = 255/297 (85%)
 Strand = Plus / Minus

                                                                            
Query: 274      ttgagatcaaggacctcacatactgcattactctctccagggcatggctggatcggactt 333
                ||||||| || |||||||||| ||| |||||||||||||||| |||||  || |||||||
Sbjct: 36187324 ttgagatgaaagacctcacatgctgtattactctctccagggaatggcaagaccggactt 36187265

                                                                            
Query: 334      tcatctcaccagcaaacgacttgagcttctccagcagggactccgcccggttgattgcct 393
                | |||||| |||  |  ||||| |||||||||||||  ||| | || ||||| ||||| |
Sbjct: 36187264 ttatctcagcagacattgacttcagcttctccagcaaagacccagctcggttaattgctt 36187205

                                                                            
Query: 394      cgtcaactgggtgttctttgccagcattagcccatgtcactccggccgatgcatcctcct 453
                |||||||| | ||||||||||||||||| |||||||| ||||| || |||||||| || |
Sbjct: 36187204 cgtcaacttgatgttctttgccagcattggcccatgtgactccagctgatgcatcatctt 36187145

                                                                            
Query: 454      caagccctgcgtcaacgacaactttgatcccttgtcgctcccactggttccgggcctcct 513
                |||||||| | ||||| ||||| ||||| || || |||||||| ||||||||||| ||||
Sbjct: 36187144 caagccctccttcaacaacaaccttgattccatgacgctcccattggttccgggcttcct 36187085

                                                                         
Query: 514      caagggcacgagcatgctccctggccttctttgcttcatcctctgcccaagccctgg 570
                ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36187084 caagggccctggcatgctccctggccttctttgcttcatcctctgcccaagccctgg 36187028



 Score =  117 bits (59), Expect = 5e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                            
Query: 91       gctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccacta 150
                |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 36187528 gctagtctgtcttgaatctgtgtacaaacttctccaggccctctttgcagtcctccacca 36187469

                                   
Query: 151      ccttcttcgacttgtcccc 169
                || |||||||||| |||||
Sbjct: 36187468 ccctcttcgacttatcccc 36187450



 Score =  109 bits (55), Expect = 1e-20
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                            
Query: 569      ggccatagacaaagccttcctttcaacttcaagctcatactgaagttgcacagcagcctg 628
                |||||| || ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 36186284 ggccattgataaagccttcctctcaacttcaagttcatattgaagctgcacaacagcctg 36186225

                                                                   
Query: 629      gttttcattctcgatttccttttgaagtttctcaatcctgttcttctcaaa 679
                  | |||||||| |||||| |||| |||||||||||||| |||||||||||
Sbjct: 36186224 tctgtcattctctatttccgtttggagtttctcaatcctattcttctcaaa 36186174



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 192      gcttctgatgacagcttctttgcctttgaggctgcagcagccccaagatctg 243
                ||||| ||||||| ||||||||||||  | |||||||||||||| |||||||
Sbjct: 36187415 gcttcggatgacaacttctttgccttcaaagctgcagcagcccctagatctg 36187364

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>gb|BT016860.1| Zea mays clone Contig693 mRNA sequence
          Length = 1508

 Score =  254 bits (128), Expect = 3e-64
 Identities = 275/324 (84%)
 Strand = Plus / Plus

                                                                       
Query: 353 cttgagcttctccagcagggactccgcccggttgattgcctcgtcaactgggtgttcttt 412
           |||||||||||||||||| |  || ||| ||||||| | |||||| |||| || ||||||
Sbjct: 525 cttgagcttctccagcagagcttctgcctggttgatagactcgtcgactgcgttttcttt 584

                                                                       
Query: 413 gccagcattagcccatgtcactccggccgatgcatcctcctcaagccctgcgtcaacgac 472
           |||||| |||||||||||||| || || || || || ||||  ||  || | || || ||
Sbjct: 585 gccagcgttagcccatgtcaccccagctgaggcgtcatccttcagttctccttcgacaac 644

                                                                       
Query: 473 aactttgatcccttgtcgctcccactggttccgggcctcctcaagggcacgagcatgctc 532
           |||| |||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 645 aactctgattccttgacgctcccattggttccgggcctcctcaagggcgcgtgcatgctc 704

                                                                       
Query: 533 cctggccttctttgcttcatcctctgcccaagccctggccatagacaaagccttcctttc 592
           || |||||| || ||||| ||||||||||||||||| |||||||| || |||||||| ||
Sbjct: 705 ccgggcctttttggcttcctcctctgcccaagcccttgccatagataacgccttcctctc 764

                                                                       
Query: 593 aacttcaagctcatactgaagttgcacagcagcctggttttcattctcgatttccttttg 652
            ||||||||||||||||||||||||||| |||||  ||| ||| |||| |||||||||||
Sbjct: 765 cacttcaagctcatactgaagttgcacaacagccgagttatcactctcaatttccttttg 824

                                   
Query: 653 aagtttctcaatcctgttcttctc 676
            ||||||||||||||  |||||||
Sbjct: 825 gagtttctcaatcctactcttctc 848



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 92  ctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccactac 151
           |||||||||||||||||||||   || | ||||||||||||| ||||| || |||| | |
Sbjct: 243 ctagtctgtcttgaatctgtgtgaaatcctctccaggccgtccttgcactcttccattgc 302

                          
Query: 152 cttcttcgacttgtc 166
           | |||||||||||||
Sbjct: 303 cctcttcgacttgtc 317



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 282 aaggacctcacatactgcattactctctcca 312
           ||||||||||||| |||||| ||||||||||
Sbjct: 454 aaggacctcacatgctgcatcactctctcca 484

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>gb|AY106183.1| Zea mays PCO125954 mRNA sequence
          Length = 663

 Score =  103 bits (52), Expect = 8e-19
 Identities = 139/168 (82%)
 Strand = Plus / Minus

                                                                       
Query: 353 cttgagcttctccagcagggactccgcccggttgattgcctcgtcaactgggtgttcttt 412
           |||||||||||||||||| |  || ||| ||||||| | |||||| |||| || ||||||
Sbjct: 183 cttgagcttctccagcagagcttctgcctggttgatagactcgtcgactgcgttttcttt 124

                                                                       
Query: 413 gccagcattagcccatgtcactccggccgatgcatcctcctcaagccctgcgtcaacgac 472
           |||||| |||||||||||||| || || || || || ||||  ||  || | || || ||
Sbjct: 123 gccagcgttagcccatgtcaccccagctgaggcgtcatccttcagttctccttcgacaac 64

                                                           
Query: 473 aactttgatcccttgtcgctcccactggttccgggcctcctcaagggc 520
           |||| |||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 63  aactctgattccttgacgctcccattggttccgggcctcctcaagggc 16



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 92  ctagtctgtcttgaatctgtgcacaaacttctccaggccgtctttgcagtcctccactac 151
           |||||||||||||||||||||   || | ||||||||||||| ||||| || |||| | |
Sbjct: 465 ctagtctgtcttgaatctgtgtgaaatcctctccaggccgtccttgcactcttccattgc 406

                          
Query: 152 cttcttcgacttgtc 166
           | |||||||||||||
Sbjct: 405 cctcttcgacttgtc 391



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 282 aaggacctcacatactgcattactctctcca 312
           ||||||||||||| |||||| ||||||||||
Sbjct: 254 aaggacctcacatgctgcatcactctctcca 224

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>ref|NM_203198.1| Arabidopsis thaliana unknown protein AT5G52410 transcript variant
            AT5G52410.2 mRNA, complete cds
          Length = 2461

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 546  gcttcatcctctgcccaagccctggccatagacaaagccttcctttcaacttcaagctca 605
            ||||||||||  |||||| ||||||| || || ||||| |||||||||||||||||||||
Sbjct: 1833 gcttcatccttagcccaatccctggcaatggataaagcgttcctttcaacttcaagctca 1774

             
Query: 606  t 606
            |
Sbjct: 1773 t 1773

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>ref|NM_124620.2| Arabidopsis thaliana unknown protein AT5G52410 transcript variant
            AT5G52410.1 mRNA, complete cds
          Length = 2440

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 546  gcttcatcctctgcccaagccctggccatagacaaagccttcctttcaacttcaagctca 605
            ||||||||||  |||||| ||||||| || || ||||| |||||||||||||||||||||
Sbjct: 1811 gcttcatccttagcccaatccctggcaatggataaagcgttcctttcaacttcaagctca 1752

             
Query: 606  t 606
            |
Sbjct: 1751 t 1751

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>gb|AY074503.1| Arabidopsis thaliana unknown protein (At5g52410) mRNA, complete cds
          Length = 2455

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 546  gcttcatcctctgcccaagccctggccatagacaaagccttcctttcaacttcaagctca 605
            ||||||||||  |||||| ||||||| || || ||||| |||||||||||||||||||||
Sbjct: 1811 gcttcatccttagcccaatccctggcaatggataaagcgttcctttcaacttcaagctca 1752

             
Query: 606  t 606
            |
Sbjct: 1751 t 1751

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>dbj|AB019226.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24M7
          Length = 73999

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 566   cctggccatagacaaagccttcctttcaacttcaagctcat 606
             |||||| || || ||||| ||||||||||||||||||||||
Sbjct: 50302 cctggcaatggataaagcgttcctttcaacttcaagctcat 50262

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 173    gcttgaacccaacgccttcgct 194
              ||||||||||||||||||||||
Sbjct: 299531 gcttgaacccaacgccttcgct 299552

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>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12
          Length = 300000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 353   cttgagcttctccagcaggga 373
             |||||||||||||||||||||
Sbjct: 98186 cttgagcttctccagcaggga 98206

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>emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-510H6, complete sequence
          Length = 188516

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 526   catgctccctggccttctttgcttc 550
             ||||||| |||||||||||||||||
Sbjct: 95529 catgctcgctggccttctttgcttc 95505

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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   cgacttgagcttctccagcag 370
             |||||||||||||||||||||
Sbjct: 14213 cgacttgagcttctccagcag 14193

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>gb|AC092490.10| Homo sapiens 12 BAC RP11-20D14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173911

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   acccttgcgccgctccctcct 267
             |||||||||||||||||||||
Sbjct: 95093 acccttgcgccgctccctcct 95073

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>dbj|AP006671.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I14, TM0368c,
             complete sequence
          Length = 71495

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 549   tcatcctctgcccaagccctg 569
             |||||||||||||||||||||
Sbjct: 12576 tcatcctctgcccaagccctg 12596

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>gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, complete sequence
          Length = 208095

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    acttgagcttctccagcagg 371
              ||||||||||||||||||||
Sbjct: 102618 acttgagcttctccagcagg 102599

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>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   ggcttgagatcaaggacctc 290
             ||||||||||||||||||||
Sbjct: 63789 ggcttgagatcaaggacctc 63770

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 351     gacttgagcttctccagcag 370
               ||||||||||||||||||||
Sbjct: 6418428 gacttgagcttctccagcag 6418447

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>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence
          Length = 211071

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    acttgagcttctccagcagg 371
              ||||||||||||||||||||
Sbjct: 186237 acttgagcttctccagcagg 186256

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>gb|AY395198.1| Uncultured bacterium clone Kolm16 16S ribosomal RNA gene, partial
           sequence
          Length = 440

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 110 cgcacccttgcgccgctccc 91

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>gb|BC070974.1| Xenopus laevis hypothetical protein MGC78802, mRNA (cDNA clone
           MGC:78802 IMAGE:3402298), complete cds
          Length = 3251

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 636 ttctcgatttccttttgaagtttctcaa 663
           ||||| |||||||| |||||||||||||
Sbjct: 623 ttctcaatttccttctgaagtttctcaa 596

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>gb|AF388322.1| Uncultured bacterium clone Ac64 16S ribosomal RNA gene, partial
           sequence
          Length = 511

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 110 cgcacccttgcgccgctccc 91

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>gb|AC113311.9| Mus musculus chromosome 1, clone RP23-440J24, complete sequence
          Length = 260120

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 642    atttccttttgaagtttctc 661
              ||||||||||||||||||||
Sbjct: 206256 atttccttttgaagtttctc 206275

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>emb|AJ863242.1| Uncultured bacterium partial 16S rRNA gene, clone 21BSF23
          Length = 1491

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 90  cgcacccttgcgccgctccc 71

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>emb|AJ863241.1| Uncultured bacterium partial 16S rRNA gene, clone 21BSF21
          Length = 1491

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 90  cgcacccttgcgccgctccc 71

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>gb|AC122059.1| Mus musculus BAC clone RP24-468J3 from 1, complete sequence
          Length = 162681

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 642    atttccttttgaagtttctc 661
              ||||||||||||||||||||
Sbjct: 158333 atttccttttgaagtttctc 158314

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>gb|AC156249.2| Xenopus tropicalis clone ISB1-238C22, complete sequence
          Length = 75318

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   tcttgaatctgtgcacaaac 119
             ||||||||||||||||||||
Sbjct: 67355 tcttgaatctgtgcacaaac 67336

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>emb|AL353900.14| Human DNA sequence from clone RP11-202C2 on chromosome 10 Contains part
             of the gene for VPS10 domain receptor protein SORCS 3
             (SORCS3), complete sequence
          Length = 158737

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aaggcatgaaaagctcccta 84
             ||||||||||||||||||||
Sbjct: 63751 aaggcatgaaaagctcccta 63770

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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      gtttcttgtctctttggctg 36
               ||||||||||||||||||||
Sbjct: 4623273 gtttcttgtctctttggctg 4623292

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>gb|AY921504.1| Uncultured eubacterium clone AP29 16S ribosomal RNA gene, partial
           sequence
          Length = 518

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 416 cgcacccttgcgccgctccc 435

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>emb|AJ617867.1| Uncultured bacterium 16S rRNA gene, clone D02308
          Length = 1493

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 90  cgcacccttgcgccgctccc 71

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>emb|AJ617866.1| Uncultured bacterium 16S rRNA gene, clone D14422
          Length = 1481

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 92  cgcacccttgcgccgctccc 73

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>gb|AC087742.9| Homo sapiens chromosome 17, clone RP11-104O19, complete sequence
          Length = 168834

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   ggttccgggcctcctcaagg 518
             ||||||||||||||||||||
Sbjct: 51618 ggttccgggcctcctcaagg 51599

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>gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, complete sequence
          Length = 181552

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 644   ttccttttgaagtttctcaa 663
             ||||||||||||||||||||
Sbjct: 79522 ttccttttgaagtttctcaa 79503

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>gb|AC108080.2| Homo sapiens chromosome 5 clone CTC-315N8, complete sequence
          Length = 160494

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 553    cctctgcccaagccctggccatag 576
              |||| |||||||||||||||||||
Sbjct: 102454 cctcagcccaagccctggccatag 102477

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>gb|AF375875.1|AF375875 Homo sapiens sodium dependendent vitamin C transporter 1 (SLC23A2)
            gene, complete cds
          Length = 8286

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 553  cctctgcccaagccctggccatag 576
            |||| |||||||||||||||||||
Sbjct: 2631 cctcagcccaagccctggccatag 2608

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>gb|AC074011.5| Homo sapiens BAC clone RP11-780J6 from 2, complete sequence
          Length = 180465

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ctccaggccgtctttgcagt 141
             ||||||||||||||||||||
Sbjct: 74089 ctccaggccgtctttgcagt 74070

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>gb|AC135457.2| Homo sapiens chromosome 5 clone RP11-1280I22, complete sequence
          Length = 83500

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   cctctgcccaagccctggccatag 576
             |||| |||||||||||||||||||
Sbjct: 16243 cctcagcccaagccctggccatag 16266

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>gb|AC108667.9| Homo sapiens 3 BAC RP11-816B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 130669

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 643   tttccttttgaagtttctca 662
             ||||||||||||||||||||
Sbjct: 87379 tttccttttgaagtttctca 87398

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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      gtttcttgtctctttggctg 36
               ||||||||||||||||||||
Sbjct: 4700754 gtttcttgtctctttggctg 4700773

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>emb|BX248985.6| Zebrafish DNA sequence from clone CH211-192N18 in linkage group 12,
             complete sequence
          Length = 167140

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ggtttcttgtctctttggct 35
             ||||||||||||||||||||
Sbjct: 70308 ggtttcttgtctctttggct 70289

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>emb|Z23587.1|HS210VA7 H. sapiens (D3S1556) DNA segment containing (CA) repeat; clone
           AFM210va7; single read
          Length = 395

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 643 tttccttttgaagtttctca 662
           ||||||||||||||||||||
Sbjct: 213 tttccttttgaagtttctca 194

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    gacttgagcttctccagcag 370
              ||||||||||||||||||||
Sbjct: 202438 gacttgagcttctccagcag 202419

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>gb|DQ268539.1| Cryptococcus neoformans var. grubii strain H99 eukaryotic ADP/ATP
           carrier (AAC1) and eukaryotic ADP/ATP carrier (AAC2)
           genes, complete cds
          Length = 5290

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 605 atactgaagttgcacagcag 624
           ||||||||||||||||||||
Sbjct: 33  atactgaagttgcacagcag 14

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>gb|AY921870.1| Uncultured Verrucomicrobia bacterium clone AKYG386 16S ribosomal
           RNA gene, partial sequence
          Length = 1410

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cgcacccttgcgccgctccc 263
           ||||||||||||||||||||
Sbjct: 109 cgcacccttgcgccgctccc 90

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>gb|AC163626.5| Mus musculus BAC clone RP23-137D2 from chromosome 1, complete sequence
          Length = 219189

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 620   agcagcctggttttcattct 639
             ||||||||||||||||||||
Sbjct: 82829 agcagcctggttttcattct 82848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,491,073
Number of Sequences: 3902068
Number of extensions: 6491073
Number of successful extensions: 163894
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163642
Number of HSP's gapped (non-prelim): 250
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result