ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_190270.1| Oryza sativa (japonica cultivar-group), predic... 161 2e-36
2gb|BT016492.1| Zea mays clone Contig325 mRNA sequence 161 2e-36
3dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
4gb|AY109375.1| Zea mays CL457_2 mRNA sequence 161 2e-36
5dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
6emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA 147 3e-32
7ref|NM_190269.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
9dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
10dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
11gb|BT016417.1| Zea mays clone Contig250 mRNA sequence 121 2e-24
12dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescenc... 54 3e-04
13gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence 52 0.001
14gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA 50 0.005
15emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene 48 0.021
16dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5,... 44 0.32
17gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence 42 1.3
18emb|AJ005499.1|ASA005499 Avena strigosa pAs14 repetitive DNA seq... 42 1.3
19ref|XM_545753.2| PREDICTED: Canis familiaris similar to Sodium/p... 40 5.0
20ref|XM_855596.1| PREDICTED: Canis familiaris similar to Sodium/p... 40 5.0
21emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 ... 40 5.0
22gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosom... 40 5.0
23gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume ... 40 5.0
24gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.0
25gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, compl... 40 5.0
26gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, com... 40 5.0
27dbj|AK126270.1| Homo sapiens cDNA FLJ44282 fis, clone TRACH2003516 40 5.0
28dbj|AK034688.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.0
29ref|NM_178099.2| Danio rerio ATPase, Na+/K+ transporting, alpha ... 40 5.0
30gb|AY094620.1| Danio rerio Na+/K+ ATPase alpha subunit isoform 9... 40 5.0
31gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-36... 40 5.0
32gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal prot... 40 5.0

>ref|NM_190270.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 906

 Score =  161 bits (81), Expect = 2e-36
 Identities = 182/217 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
           ||||||||||| |||| ||| |||| ||||| |  |  || || |||||| |||||||||
Sbjct: 877 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 818

                                                                       
Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279
           | |||||||| ||||||||| | ||||| |||||||| |||   |||   | ||||||||
Sbjct: 817 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 758

                                                                       
Query: 280 attttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacagtgcttcca 339
           |||| || || ||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct: 757 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 698

                                                
Query: 340 tgccatcagcctcgattcccttcttgatgnactcact 376
           |||||||||| || ||||||||||||| | |||||||
Sbjct: 697 tgccatcagcatcaattcccttcttgaggtactcact 661



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>gb|BT016492.1| Zea mays clone Contig325 mRNA sequence
          Length = 1365

 Score =  161 bits (81), Expect = 2e-36
 Identities = 150/174 (86%)
 Strand = Plus / Minus

                                                                       
Query: 203 gagactgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctt 262
           ||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||  |||
Sbjct: 902 gagactggccttcctctgctcgtatgtcagtttcttggggttgtacctcttgtgctcctt 843

                                                                       
Query: 263 tggtggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaacctt 322
           |||||| | ||||||||| ||  | |  | ||||||| |||| ||||||||||| |||||
Sbjct: 842 tggtggctgcttggttgacttgaccacagaaggatcagcacggatggcagcatggacctt 783

                                                                 
Query: 323 cttgtacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
           ||||||||| ||||||||| | |||||||| ||||||||||| ||| |||||||
Sbjct: 782 cttgtacagagcttccatgtcgtcagcctcaattcccttcttaatgtactcact 729



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>dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H05, full
           insert sequence
          Length = 1219

 Score =  161 bits (81), Expect = 2e-36
 Identities = 182/217 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
           ||||||||||| |||| ||| |||| ||||| |  |  || || |||||| |||||||||
Sbjct: 973 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 914

                                                                       
Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279
           | |||||||| ||||||||| | ||||| |||||||| |||   |||   | ||||||||
Sbjct: 913 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 854

                                                                       
Query: 280 attttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacagtgcttcca 339
           |||| || || ||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct: 853 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 794

                                                
Query: 340 tgccatcagcctcgattcccttcttgatgnactcact 376
           |||||||||| || ||||||||||||| | |||||||
Sbjct: 793 tgccatcagcatcaattcccttcttgaggtactcact 757



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>gb|AY109375.1| Zea mays CL457_2 mRNA sequence
          Length = 1397

 Score =  161 bits (81), Expect = 2e-36
 Identities = 147/170 (86%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggt 266
           ||| ||||||||||||| || |||||||||||||| ||||||||||| |||  |||||||
Sbjct: 914 ctggccttcctctgctcatatgtcagcttcttggggttgtacctcttatgctcctttggt 855

                                                                       
Query: 267 ggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttg 326
           || | ||||||||| ||  | || | ||||||| |||| ||||||||||| |||||||||
Sbjct: 854 ggctgcttggttgacttgacaatggaaggatcagcacggatggcagcatggaccttcttg 795

                                                             
Query: 327 tacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
           ||||| ||||||||| |||||||||| ||||||||||| ||| |||||||
Sbjct: 794 tacagagcttccatgtcatcagcctcaattcccttcttaatgtactcact 745



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>dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full
           insert sequence
          Length = 1219

 Score =  159 bits (80), Expect = 8e-36
 Identities = 149/173 (86%)
 Strand = Plus / Minus

                                                                       
Query: 204 agactgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtcttt 263
           |||||| |||||||||| |||||||| ||||||||| | ||||| |||||||| |||   
Sbjct: 930 agactggccttcctctgttcgtaggttagcttcttgaggttgtatctcttgtgggtcgcc 871

                                                                       
Query: 264 ggtggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttc 323
           |||   | |||||||||||| || || ||||||||| |||| ||||||||||| ||||||
Sbjct: 870 ggttccttcttggttgatttggccatggtaggatcagcacggatggcagcatggaccttc 811

                                                                
Query: 324 ttgtacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
           |||||||||||||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 810 ttgtacagtgcttccatgccatcagcatcaattcccttcttgaggtactcact 758



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>emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA
          Length = 1114

 Score =  147 bits (74), Expect = 3e-32
 Identities = 182/218 (83%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
           ||||||||||| |||| ||| |||| ||||| |  |  || || |||||| |||||||||
Sbjct: 887 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 828

                                                                       
Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279
           | |||||||| ||||||||| | ||||| |||||||| |||   |||   | ||||||||
Sbjct: 827 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 768

                                                                       
Query: 280 attttgctattgtagg-atcancacgaatggcagcatgaaccttcttgtacagtgcttcc 338
           |||| || || ||||| |||| |||| ||||||||||| |||||||||||||||||||||
Sbjct: 767 atttggccatggtagggatcagcacggatggcagcatggaccttcttgtacagtgcttcc 708

                                                 
Query: 339 atgccatcagcctcgattcccttcttgatgnactcact 376
           ||||||||||| || ||||||||||||| | |||||||
Sbjct: 707 atgccatcagcatcaattcccttcttgaggtactcact 670



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>ref|NM_190269.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 915

 Score =  141 bits (71), Expect = 2e-30
 Identities = 149/176 (84%)
 Strand = Plus / Minus

                                                                       
Query: 201 acgagactgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtc 260
           ||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||| || 
Sbjct: 845 acgagactggccttcctctgctcgtaggtcagcttcttgaggttgtatctcttgtgggta 786

                                                                       
Query: 261 tttggtggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaacc 320
              |||   | |||||| ||||| || || ||||||||  | || ||||||||||| |||
Sbjct: 785 gccggttccttcttggtcgatttggccatggtaggatcggcgcggatggcagcatggacc 726

                                                                   
Query: 321 ttcttgtacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
           ||||||||||||| ||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 725 ttcttgtacagtgattccatgccatcagcgtcaattcccttcttgaggtactcact 670



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 4e-28
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                            
Query: 272      cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331
                |||||||||||| || || ||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 38969192 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 38969133

                                                             
Query: 332      tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
                |||||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 38969132 tgcttccatgccatcagcatcaattcccttcttgaggtactcact 38969088



 Score =  101 bits (51), Expect = 2e-18
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                            
Query: 272      cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331
                |||||| ||||| || || ||||||||  | || ||||||||||| ||||||||||||||
Sbjct: 38963860 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 38963801

                                                             
Query: 332      tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
                || ||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 38963800 tgattccatgccatcagcgtcaattcccttcttgaggtactcact 38963756



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                       
Query: 201      acgagactgnccttcctctgctcgtaggtcagcttcttg 239
                ||||||||| |||||||||||||||||||||||||||||
Sbjct: 38964017 acgagactggccttcctctgctcgtaggtcagcttcttg 38963979



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                            
Query: 160      catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
                ||||||||||| |||| ||| |||| ||||| |  |  || || |||||| |||||||||
Sbjct: 38969388 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 38969329

                                    
Query: 220      gctcgtaggtcagcttcttg 239
                | |||||||| |||||||||
Sbjct: 38969328 gttcgtaggttagcttcttg 38969309



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>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0674H09
          Length = 142955

 Score =  133 bits (67), Expect = 4e-28
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                         
Query: 272   cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331
             |||||||||||| || || ||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 42825 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 42766

                                                          
Query: 332   tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
             |||||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 42765 tgcttccatgccatcagcatcaattcccttcttgaggtactcact 42721



 Score =  101 bits (51), Expect = 2e-18
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                         
Query: 272   cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331
             |||||| ||||| || || ||||||||  | || ||||||||||| ||||||||||||||
Sbjct: 37493 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 37434

                                                          
Query: 332   tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
             || ||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 37433 tgattccatgccatcagcgtcaattcccttcttgaggtactcact 37389



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                    
Query: 201   acgagactgnccttcctctgctcgtaggtcagcttcttg 239
             ||||||||| |||||||||||||||||||||||||||||
Sbjct: 37650 acgagactggccttcctctgctcgtaggtcagcttcttg 37612



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                         
Query: 160   catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
             ||||||||||| |||| ||| |||| ||||| |  |  || || |||||| |||||||||
Sbjct: 43021 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 42962

                                 
Query: 220   gctcgtaggtcagcttcttg 239
             | |||||||| |||||||||
Sbjct: 42961 gttcgtaggttagcttcttg 42942



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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696G06
          Length = 142571

 Score =  133 bits (67), Expect = 4e-28
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                          
Query: 272    cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331
              |||||||||||| || || ||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 133978 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 133919

                                                           
Query: 332    tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
              |||||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 133918 tgcttccatgccatcagcatcaattcccttcttgaggtactcact 133874



 Score =  101 bits (51), Expect = 2e-18
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                          
Query: 272    cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331
              |||||| ||||| || || ||||||||  | || ||||||||||| ||||||||||||||
Sbjct: 128646 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 128587

                                                           
Query: 332    tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376
              || ||||||||||||||| || ||||||||||||| | |||||||
Sbjct: 128586 tgattccatgccatcagcgtcaattcccttcttgaggtactcact 128542



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                     
Query: 201    acgagactgnccttcctctgctcgtaggtcagcttcttg 239
              ||||||||| |||||||||||||||||||||||||||||
Sbjct: 128803 acgagactggccttcctctgctcgtaggtcagcttcttg 128765



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                          
Query: 160    catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
              ||||||||||| |||| ||| |||| ||||| |  |  || || |||||| |||||||||
Sbjct: 134174 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 134115

                                  
Query: 220    gctcgtaggtcagcttcttg 239
              | |||||||| |||||||||
Sbjct: 134114 gttcgtaggttagcttcttg 134095



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>gb|BT016417.1| Zea mays clone Contig250 mRNA sequence
          Length = 1212

 Score =  121 bits (61), Expect = 2e-24
 Identities = 177/217 (81%)
 Strand = Plus / Minus

                                                                       
Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219
           ||||||||||||| || ||| ||||    |||||||  || | ||| ||| |||||||||
Sbjct: 960 catcagcaccaccggaggagttgagttggttgagcctttcaatgaggctggccttcctct 901

                                                                       
Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279
           |||| || |||||||||||||| ||||||||||| |||  ||||||||| | ||||||||
Sbjct: 900 gctcatatgtcagcttcttggggttgtacctcttatgctcctttggtggctgcttggttg 841

                                                                       
Query: 280 attttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacagtgcttcca 339
           | ||  | || | ||||||  |||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 840 acttaacaatggaaggatcggcacggatggcagcatggaccttcttgtacagcgcttcta 781

                                                
Query: 340 tgccatcagcctcgattcccttcttgatgnactcact 376
           |  |||||||||| | ||||||||| ||| || ||||
Sbjct: 780 tttcatcagcctcaactcccttcttaatgtacgcact 744



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>dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescence-associated
           protein, complete cds
          Length = 1100

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 301 cacgaatggcagcatgaaccttcttgtacagtgcttccatgccatcagcctcgattccct 360
           ||||||| |||||||||||||||||||| ||| | || || |||||||| || || || |
Sbjct: 804 cacgaattgcagcatgaaccttcttgtaaagttcctcaattccatcagcttctatccctt 745

                  
Query: 361 tcttgat 367
           |||||||
Sbjct: 744 tcttgat 738



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>gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence
          Length = 1274

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 301 cacgaatggcagcatgaaccttcttgtaca 330
           |||| |||||||||||||||||||||||||
Sbjct: 853 cacgtatggcagcatgaaccttcttgtaca 824



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 228 gtcagcttcttgggattgtacctcttgtgcgtctt 262
           |||||||||||  ||||||||||||||||| ||||
Sbjct: 926 gtcagcttcttcagattgtacctcttgtgcttctt 892



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>gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA
          Length = 1114

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 306 atggcagcatgaaccttcttgtaca 330
           |||||||||||||||||||||||||
Sbjct: 771 atggcagcatgaaccttcttgtaca 747



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>emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene
          Length = 1115

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 301 cacgaatggcagcatgaaccttcttgta 328
           ||||||| ||||||||||||||||||||
Sbjct: 757 cacgaattgcagcatgaaccttcttgta 730



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>dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5, partial cds
          Length = 399

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 225 taggtcagcttcttgggattgtacctcttgtgcgtctt 262
           ||||||||||||||  | |||||||||||||| |||||
Sbjct: 276 taggtcagcttcttaaggttgtacctcttgtgtgtctt 239



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 306 atggcagcatgaaccttcttgtaca 330
           |||||||| ||||||||||||||||
Sbjct: 195 atggcagcgtgaaccttcttgtaca 171



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>gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 306 atggcagcatgaaccttcttgtaca 330
           ||||||||||||||||| |||||||
Sbjct: 794 atggcagcatgaacctttttgtaca 770



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>emb|AJ005499.1|ASA005499 Avena strigosa pAs14 repetitive DNA sequence
          Length = 639

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 262 ttggtggttccttggttgattttgc 286
           ||||||||||||||| |||||||||
Sbjct: 341 ttggtggttccttgggtgattttgc 317



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>ref|XM_545753.2| PREDICTED: Canis familiaris similar to Sodium/potassium-transporting
            ATPase alpha-2 chain precursor (Sodium pump 2) (Na+/K+
            ATPase 2), transcript variant 1 (LOC488636), mRNA
          Length = 3039

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ccttcctctgctcgtaggtc 230
            ||||||||||||||||||||
Sbjct: 2815 ccttcctctgctcgtaggtc 2796



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>ref|XM_855596.1| PREDICTED: Canis familiaris similar to Sodium/potassium-transporting
            ATPase alpha-2 chain precursor (Sodium pump 2) (Na+/K+
            ATPase 2), transcript variant 2 (LOC488636), mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ccttcctctgctcgtaggtc 230
            ||||||||||||||||||||
Sbjct: 2833 ccttcctctgctcgtaggtc 2814



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>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3,
            complete sequence
          Length = 133351

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                   
Query: 293  aggatcancacgaatggcagcatgaaccttcttgtacag 331
            ||||||  ||||||||||| ||| ||||||||| |||||
Sbjct: 9393 aggatctacacgaatggcatcattaaccttcttatacag 9355



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>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence
          Length = 161757

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    tggttccttggttgattttg 285
              ||||||||||||||||||||
Sbjct: 134118 tggttccttggttgattttg 134137



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>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1)
             gene, complete cds
          Length = 169976

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   gttccttggttgattttgct 287
             ||||||||||||||||||||
Sbjct: 35316 gttccttggttgattttgct 35297



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     attgagccgctctacgagac 207
               ||||||||||||||||||||
Sbjct: 4242294 attgagccgctctacgagac 4242313



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>gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, complete sequence
          Length = 220579

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aagcatgaagacagcactat 114
              ||||||||||||||||||||
Sbjct: 133716 aagcatgaagacagcactat 133697



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>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence
          Length = 203937

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   tggttccttggttgattttg 285
             ||||||||||||||||||||
Sbjct: 33502 tggttccttggttgattttg 33521



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>dbj|AK126270.1| Homo sapiens cDNA FLJ44282 fis, clone TRACH2003516
          Length = 2555

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   aagcatgaagacagcactat 114
            ||||||||||||||||||||
Sbjct: 1586 aagcatgaagacagcactat 1567



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>dbj|AK034688.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430024N04 product:unclassifiable, full insert
            sequence
          Length = 2042

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  tggttccttggttgattttg 285
            ||||||||||||||||||||
Sbjct: 1763 tggttccttggttgattttg 1744



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>ref|NM_178099.2| Danio rerio ATPase, Na+/K+ transporting, alpha 1a.5 polypeptide
            (atp1a1a.5), mRNA
          Length = 3838

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ccttcctctgctcgtaggtc 230
            ||||||||||||||||||||
Sbjct: 2810 ccttcctctgctcgtaggtc 2791



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>gb|AY094620.1| Danio rerio Na+/K+ ATPase alpha subunit isoform 9 (atp1a1a.5) mRNA,
            complete cds
          Length = 3838

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ccttcctctgctcgtaggtc 230
            ||||||||||||||||||||
Sbjct: 2810 ccttcctctgctcgtaggtc 2791



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>gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-363E6, complete sequence
          Length = 220633

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aagcatgaagacagcactat 114
              ||||||||||||||||||||
Sbjct: 133766 aagcatgaagacagcactat 133747



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>gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal protein L5 (Sb58) mRNA,
           partial cds
          Length = 556

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 303 cgaatggcagcatgaaccttcttgtaca 330
           |||||||||||||| || ||||||||||
Sbjct: 118 cgaatggcagcatgcactttcttgtaca 91


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,083,227
Number of Sequences: 3902068
Number of extensions: 2083227
Number of successful extensions: 37453
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37364
Number of HSP's gapped (non-prelim): 87
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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