| Clone Name | rbags13g21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 161 bits (81), Expect = 2e-36 Identities = 182/217 (83%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||| |||| ||| |||| ||||| | | || || |||||| ||||||||| Sbjct: 877 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 818 Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279 | |||||||| ||||||||| | ||||| |||||||| ||| ||| | |||||||| Sbjct: 817 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 758 Query: 280 attttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacagtgcttcca 339 |||| || || ||||||||| |||| ||||||||||| |||||||||||||||||||||| Sbjct: 757 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 698 Query: 340 tgccatcagcctcgattcccttcttgatgnactcact 376 |||||||||| || ||||||||||||| | ||||||| Sbjct: 697 tgccatcagcatcaattcccttcttgaggtactcact 661
>gb|BT016492.1| Zea mays clone Contig325 mRNA sequence Length = 1365 Score = 161 bits (81), Expect = 2e-36 Identities = 150/174 (86%) Strand = Plus / Minus Query: 203 gagactgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctt 262 ||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||| ||| Sbjct: 902 gagactggccttcctctgctcgtatgtcagtttcttggggttgtacctcttgtgctcctt 843 Query: 263 tggtggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaacctt 322 |||||| | ||||||||| || | | | ||||||| |||| ||||||||||| ||||| Sbjct: 842 tggtggctgcttggttgacttgaccacagaaggatcagcacggatggcagcatggacctt 783 Query: 323 cttgtacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 ||||||||| ||||||||| | |||||||| ||||||||||| ||| ||||||| Sbjct: 782 cttgtacagagcttccatgtcgtcagcctcaattcccttcttaatgtactcact 729
>dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H05, full insert sequence Length = 1219 Score = 161 bits (81), Expect = 2e-36 Identities = 182/217 (83%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||| |||| ||| |||| ||||| | | || || |||||| ||||||||| Sbjct: 973 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 914 Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279 | |||||||| ||||||||| | ||||| |||||||| ||| ||| | |||||||| Sbjct: 913 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 854 Query: 280 attttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacagtgcttcca 339 |||| || || ||||||||| |||| ||||||||||| |||||||||||||||||||||| Sbjct: 853 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 794 Query: 340 tgccatcagcctcgattcccttcttgatgnactcact 376 |||||||||| || ||||||||||||| | ||||||| Sbjct: 793 tgccatcagcatcaattcccttcttgaggtactcact 757
>gb|AY109375.1| Zea mays CL457_2 mRNA sequence Length = 1397 Score = 161 bits (81), Expect = 2e-36 Identities = 147/170 (86%) Strand = Plus / Minus Query: 207 ctgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggt 266 ||| ||||||||||||| || |||||||||||||| ||||||||||| ||| ||||||| Sbjct: 914 ctggccttcctctgctcatatgtcagcttcttggggttgtacctcttatgctcctttggt 855 Query: 267 ggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttg 326 || | ||||||||| || | || | ||||||| |||| ||||||||||| ||||||||| Sbjct: 854 ggctgcttggttgacttgacaatggaaggatcagcacggatggcagcatggaccttcttg 795 Query: 327 tacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 ||||| ||||||||| |||||||||| ||||||||||| ||| ||||||| Sbjct: 794 tacagagcttccatgtcatcagcctcaattcccttcttaatgtactcact 745
>dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full insert sequence Length = 1219 Score = 159 bits (80), Expect = 8e-36 Identities = 149/173 (86%) Strand = Plus / Minus Query: 204 agactgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtcttt 263 |||||| |||||||||| |||||||| ||||||||| | ||||| |||||||| ||| Sbjct: 930 agactggccttcctctgttcgtaggttagcttcttgaggttgtatctcttgtgggtcgcc 871 Query: 264 ggtggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttc 323 ||| | |||||||||||| || || ||||||||| |||| ||||||||||| |||||| Sbjct: 870 ggttccttcttggttgatttggccatggtaggatcagcacggatggcagcatggaccttc 811 Query: 324 ttgtacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 |||||||||||||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 810 ttgtacagtgcttccatgccatcagcatcaattcccttcttgaggtactcact 758
>emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA Length = 1114 Score = 147 bits (74), Expect = 3e-32 Identities = 182/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||| |||| ||| |||| ||||| | | || || |||||| ||||||||| Sbjct: 887 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 828 Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279 | |||||||| ||||||||| | ||||| |||||||| ||| ||| | |||||||| Sbjct: 827 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 768 Query: 280 attttgctattgtagg-atcancacgaatggcagcatgaaccttcttgtacagtgcttcc 338 |||| || || ||||| |||| |||| ||||||||||| ||||||||||||||||||||| Sbjct: 767 atttggccatggtagggatcagcacggatggcagcatggaccttcttgtacagtgcttcc 708 Query: 339 atgccatcagcctcgattcccttcttgatgnactcact 376 ||||||||||| || ||||||||||||| | ||||||| Sbjct: 707 atgccatcagcatcaattcccttcttgaggtactcact 670
>ref|NM_190269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 141 bits (71), Expect = 2e-30 Identities = 149/176 (84%) Strand = Plus / Minus Query: 201 acgagactgnccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtc 260 ||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||| || Sbjct: 845 acgagactggccttcctctgctcgtaggtcagcttcttgaggttgtatctcttgtgggta 786 Query: 261 tttggtggttccttggttgattttgctattgtaggatcancacgaatggcagcatgaacc 320 ||| | |||||| ||||| || || |||||||| | || ||||||||||| ||| Sbjct: 785 gccggttccttcttggtcgatttggccatggtaggatcggcgcggatggcagcatggacc 726 Query: 321 ttcttgtacagtgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 ||||||||||||| ||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 725 ttcttgtacagtgattccatgccatcagcgtcaattcccttcttgaggtactcact 670
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 133 bits (67), Expect = 4e-28 Identities = 95/105 (90%) Strand = Plus / Minus Query: 272 cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||||||||| || || ||||||||| |||| ||||||||||| |||||||||||||| Sbjct: 38969192 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 38969133 Query: 332 tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 |||||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 38969132 tgcttccatgccatcagcatcaattcccttcttgaggtactcact 38969088 Score = 101 bits (51), Expect = 2e-18 Identities = 91/105 (86%) Strand = Plus / Minus Query: 272 cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||| ||||| || || |||||||| | || ||||||||||| |||||||||||||| Sbjct: 38963860 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 38963801 Query: 332 tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 || ||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 38963800 tgattccatgccatcagcgtcaattcccttcttgaggtactcact 38963756 Score = 71.9 bits (36), Expect = 1e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 201 acgagactgnccttcctctgctcgtaggtcagcttcttg 239 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 38964017 acgagactggccttcctctgctcgtaggtcagcttcttg 38963979 Score = 52.0 bits (26), Expect = 0.001 Identities = 66/80 (82%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||| |||| ||| |||| ||||| | | || || |||||| ||||||||| Sbjct: 38969388 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 38969329 Query: 220 gctcgtaggtcagcttcttg 239 | |||||||| ||||||||| Sbjct: 38969328 gttcgtaggttagcttcttg 38969309
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 133 bits (67), Expect = 4e-28 Identities = 95/105 (90%) Strand = Plus / Minus Query: 272 cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||||||||| || || ||||||||| |||| ||||||||||| |||||||||||||| Sbjct: 42825 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 42766 Query: 332 tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 |||||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 42765 tgcttccatgccatcagcatcaattcccttcttgaggtactcact 42721 Score = 101 bits (51), Expect = 2e-18 Identities = 91/105 (86%) Strand = Plus / Minus Query: 272 cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||| ||||| || || |||||||| | || ||||||||||| |||||||||||||| Sbjct: 37493 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 37434 Query: 332 tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 || ||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 37433 tgattccatgccatcagcgtcaattcccttcttgaggtactcact 37389 Score = 71.9 bits (36), Expect = 1e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 201 acgagactgnccttcctctgctcgtaggtcagcttcttg 239 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 37650 acgagactggccttcctctgctcgtaggtcagcttcttg 37612 Score = 52.0 bits (26), Expect = 0.001 Identities = 66/80 (82%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||| |||| ||| |||| ||||| | | || || |||||| ||||||||| Sbjct: 43021 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 42962 Query: 220 gctcgtaggtcagcttcttg 239 | |||||||| ||||||||| Sbjct: 42961 gttcgtaggttagcttcttg 42942
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 133 bits (67), Expect = 4e-28 Identities = 95/105 (90%) Strand = Plus / Minus Query: 272 cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||||||||| || || ||||||||| |||| ||||||||||| |||||||||||||| Sbjct: 133978 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 133919 Query: 332 tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 |||||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 133918 tgcttccatgccatcagcatcaattcccttcttgaggtactcact 133874 Score = 101 bits (51), Expect = 2e-18 Identities = 91/105 (86%) Strand = Plus / Minus Query: 272 cttggttgattttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||| ||||| || || |||||||| | || ||||||||||| |||||||||||||| Sbjct: 128646 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 128587 Query: 332 tgcttccatgccatcagcctcgattcccttcttgatgnactcact 376 || ||||||||||||||| || ||||||||||||| | ||||||| Sbjct: 128586 tgattccatgccatcagcgtcaattcccttcttgaggtactcact 128542 Score = 71.9 bits (36), Expect = 1e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 201 acgagactgnccttcctctgctcgtaggtcagcttcttg 239 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 128803 acgagactggccttcctctgctcgtaggtcagcttcttg 128765 Score = 52.0 bits (26), Expect = 0.001 Identities = 66/80 (82%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||| |||| ||| |||| ||||| | | || || |||||| ||||||||| Sbjct: 134174 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 134115 Query: 220 gctcgtaggtcagcttcttg 239 | |||||||| ||||||||| Sbjct: 134114 gttcgtaggttagcttcttg 134095
>gb|BT016417.1| Zea mays clone Contig250 mRNA sequence Length = 1212 Score = 121 bits (61), Expect = 2e-24 Identities = 177/217 (81%) Strand = Plus / Minus Query: 160 catcagcaccaccagatgagntgagggcattgagccgctctacgagactgnccttcctct 219 ||||||||||||| || ||| |||| ||||||| || | ||| ||| ||||||||| Sbjct: 960 catcagcaccaccggaggagttgagttggttgagcctttcaatgaggctggccttcctct 901 Query: 220 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 279 |||| || |||||||||||||| ||||||||||| ||| ||||||||| | |||||||| Sbjct: 900 gctcatatgtcagcttcttggggttgtacctcttatgctcctttggtggctgcttggttg 841 Query: 280 attttgctattgtaggatcancacgaatggcagcatgaaccttcttgtacagtgcttcca 339 | || | || | |||||| |||| ||||||||||| |||||||||||||| ||||| | Sbjct: 840 acttaacaatggaaggatcggcacggatggcagcatggaccttcttgtacagcgcttcta 781 Query: 340 tgccatcagcctcgattcccttcttgatgnactcact 376 | |||||||||| | ||||||||| ||| || |||| Sbjct: 780 tttcatcagcctcaactcccttcttaatgtacgcact 744
>dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescence-associated protein, complete cds Length = 1100 Score = 54.0 bits (27), Expect = 3e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 301 cacgaatggcagcatgaaccttcttgtacagtgcttccatgccatcagcctcgattccct 360 ||||||| |||||||||||||||||||| ||| | || || |||||||| || || || | Sbjct: 804 cacgaattgcagcatgaaccttcttgtaaagttcctcaattccatcagcttctatccctt 745 Query: 361 tcttgat 367 ||||||| Sbjct: 744 tcttgat 738
>gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence Length = 1274 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 301 cacgaatggcagcatgaaccttcttgtaca 330 |||| ||||||||||||||||||||||||| Sbjct: 853 cacgtatggcagcatgaaccttcttgtaca 824 Score = 46.1 bits (23), Expect = 0.081 Identities = 32/35 (91%) Strand = Plus / Minus Query: 228 gtcagcttcttgggattgtacctcttgtgcgtctt 262 ||||||||||| ||||||||||||||||| |||| Sbjct: 926 gtcagcttcttcagattgtacctcttgtgcttctt 892
>gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA Length = 1114 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 306 atggcagcatgaaccttcttgtaca 330 ||||||||||||||||||||||||| Sbjct: 771 atggcagcatgaaccttcttgtaca 747
>emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene Length = 1115 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 301 cacgaatggcagcatgaaccttcttgta 328 ||||||| |||||||||||||||||||| Sbjct: 757 cacgaattgcagcatgaaccttcttgta 730
>dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5, partial cds Length = 399 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Minus Query: 225 taggtcagcttcttgggattgtacctcttgtgcgtctt 262 |||||||||||||| | |||||||||||||| ||||| Sbjct: 276 taggtcagcttcttaaggttgtacctcttgtgtgtctt 239 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 306 atggcagcatgaaccttcttgtaca 330 |||||||| |||||||||||||||| Sbjct: 195 atggcagcgtgaaccttcttgtaca 171
>gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence Length = 1161 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 306 atggcagcatgaaccttcttgtaca 330 ||||||||||||||||| ||||||| Sbjct: 794 atggcagcatgaacctttttgtaca 770
>emb|AJ005499.1|ASA005499 Avena strigosa pAs14 repetitive DNA sequence Length = 639 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 262 ttggtggttccttggttgattttgc 286 ||||||||||||||| ||||||||| Sbjct: 341 ttggtggttccttgggtgattttgc 317
>ref|XM_545753.2| PREDICTED: Canis familiaris similar to Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium pump 2) (Na+/K+ ATPase 2), transcript variant 1 (LOC488636), mRNA Length = 3039 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ccttcctctgctcgtaggtc 230 |||||||||||||||||||| Sbjct: 2815 ccttcctctgctcgtaggtc 2796
>ref|XM_855596.1| PREDICTED: Canis familiaris similar to Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium pump 2) (Na+/K+ ATPase 2), transcript variant 2 (LOC488636), mRNA Length = 2949 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ccttcctctgctcgtaggtc 230 |||||||||||||||||||| Sbjct: 2833 ccttcctctgctcgtaggtc 2814
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 40.1 bits (20), Expect = 5.0 Identities = 34/39 (87%) Strand = Plus / Minus Query: 293 aggatcancacgaatggcagcatgaaccttcttgtacag 331 |||||| ||||||||||| ||| ||||||||| ||||| Sbjct: 9393 aggatctacacgaatggcatcattaaccttcttatacag 9355
>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence Length = 161757 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggttccttggttgattttg 285 |||||||||||||||||||| Sbjct: 134118 tggttccttggttgattttg 134137
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gttccttggttgattttgct 287 |||||||||||||||||||| Sbjct: 35316 gttccttggttgattttgct 35297
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 attgagccgctctacgagac 207 |||||||||||||||||||| Sbjct: 4242294 attgagccgctctacgagac 4242313
>gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, complete sequence Length = 220579 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aagcatgaagacagcactat 114 |||||||||||||||||||| Sbjct: 133716 aagcatgaagacagcactat 133697
>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence Length = 203937 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggttccttggttgattttg 285 |||||||||||||||||||| Sbjct: 33502 tggttccttggttgattttg 33521
>dbj|AK126270.1| Homo sapiens cDNA FLJ44282 fis, clone TRACH2003516 Length = 2555 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aagcatgaagacagcactat 114 |||||||||||||||||||| Sbjct: 1586 aagcatgaagacagcactat 1567
>dbj|AK034688.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430024N04 product:unclassifiable, full insert sequence Length = 2042 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tggttccttggttgattttg 285 |||||||||||||||||||| Sbjct: 1763 tggttccttggttgattttg 1744
>ref|NM_178099.2| Danio rerio ATPase, Na+/K+ transporting, alpha 1a.5 polypeptide (atp1a1a.5), mRNA Length = 3838 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ccttcctctgctcgtaggtc 230 |||||||||||||||||||| Sbjct: 2810 ccttcctctgctcgtaggtc 2791
>gb|AY094620.1| Danio rerio Na+/K+ ATPase alpha subunit isoform 9 (atp1a1a.5) mRNA, complete cds Length = 3838 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ccttcctctgctcgtaggtc 230 |||||||||||||||||||| Sbjct: 2810 ccttcctctgctcgtaggtc 2791
>gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-363E6, complete sequence Length = 220633 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aagcatgaagacagcactat 114 |||||||||||||||||||| Sbjct: 133766 aagcatgaagacagcactat 133747
>gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal protein L5 (Sb58) mRNA, partial cds Length = 556 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 303 cgaatggcagcatgaaccttcttgtaca 330 |||||||||||||| || |||||||||| Sbjct: 118 cgaatggcagcatgcactttcttgtaca 91 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,083,227 Number of Sequences: 3902068 Number of extensions: 2083227 Number of successful extensions: 37453 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37364 Number of HSP's gapped (non-prelim): 87 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)