| Clone Name | rbags13g17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full insert mRNA sequence Length = 1394 Score = 260 bits (131), Expect = 5e-66 Identities = 146/152 (96%) Strand = Plus / Minus Query: 440 agcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatgagaaca 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1389 agcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatgagaaca 1330 Query: 500 ggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatcattgcc 559 || ||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||| Sbjct: 1329 ggtccagtgccttgtcccttcacttttccaccagtagtgtcgcgctcttcgatcattgcc 1270 Query: 560 cggtattgtttngaactgcttagcaagcattc 591 ||||||||||| |||||||||||||||||||| Sbjct: 1269 cggtattgttttgaactgcttagcaagcattc 1238
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3549 Score = 228 bits (115), Expect = 2e-56 Identities = 248/295 (84%) Strand = Plus / Minus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3034 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455 | ||||||||||||| |||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 3033 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2974 Query: 456 tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515 |||||| ||||||||||| ||||| || || ||||| |||| || ||||||||||| | Sbjct: 2973 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 2914 Query: 516 ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570 |||| |||||||| | ||| |||||||||| |||||||||| ||||||||| Sbjct: 2913 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 2859
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds Length = 2961 Score = 228 bits (115), Expect = 2e-56 Identities = 248/295 (84%) Strand = Plus / Minus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 2813 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455 | ||||||||||||| |||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 2812 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2753 Query: 456 tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515 |||||| ||||||||||| ||||| || || ||||| |||| || ||||||||||| | Sbjct: 2752 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 2693 Query: 516 ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570 |||| |||||||| | ||| |||||||||| |||||||||| ||||||||| Sbjct: 2692 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 2638
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full insert sequence Length = 3547 Score = 228 bits (115), Expect = 2e-56 Identities = 248/295 (84%) Strand = Plus / Minus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3032 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455 | ||||||||||||| |||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 3031 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2972 Query: 456 tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515 |||||| ||||||||||| ||||| || || ||||| |||| || ||||||||||| | Sbjct: 2971 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 2912 Query: 516 ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570 |||| |||||||| | ||| |||||||||| |||||||||| ||||||||| Sbjct: 2911 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 2857
>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full insert sequence Length = 1551 Score = 228 bits (115), Expect = 2e-56 Identities = 248/295 (84%) Strand = Plus / Minus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 1050 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455 | ||||||||||||| |||| ||| || |||||||||||||||||||||| |||||||| Sbjct: 1049 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 990 Query: 456 tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515 |||||| ||||||||||| ||||| || || ||||| |||| || ||||||||||| | Sbjct: 989 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 930 Query: 516 ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570 |||| |||||||| | ||| |||||||||| |||||||||| ||||||||| Sbjct: 929 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 875
>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence Length = 1657 Score = 194 bits (98), Expect = 2e-46 Identities = 185/216 (85%) Strand = Plus / Minus Query: 284 tgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagnctttccttcttc 343 ||||| |||||||| |||||||| ||||| |||||||| | ||||| ||||||||||| Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291 Query: 344 gccttctnctggaactgttccangttctngagagctgncttcctctcctttgtgtcccat 403 ||||| | |||||||||||||| ||||| |||||| | |||||||||| | ||||||||| Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcccat 1231 Query: 404 ctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattgatgctggat 463 ||||||| |||| || ||||||||||||||||||||||||| ||| || ||||| | Sbjct: 1230 ctcttgcttctttcgagccgggcaagcccttcctcaagcatggtagcgtttatgctactt 1171 Query: 464 tctgtctctggatcaacaagagtcacaatgagaaca 499 |||||||| | |||||||||||| |||||||||||| Sbjct: 1170 tctgtctccgcatcaacaagagtaacaatgagaaca 1135
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 gene, complete cds Length = 5478 Score = 135 bits (68), Expect = 2e-28 Identities = 137/162 (84%) Strand = Plus / Minus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 5152 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437 | ||||||||||||| |||| ||| || ||||||||||||| Sbjct: 5151 tatcccatctcttgcttctttcaagccgagcaagcccttcct 5110 Score = 99.6 bits (50), Expect = 1e-17 Identities = 114/136 (83%) Strand = Plus / Minus Query: 435 cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494 |||||||||||| |||||||||||||| ||||||||||| ||||| || || ||||| | Sbjct: 4915 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 4856 Query: 495 gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554 ||| || ||||||||||| ||||| |||||||| | ||| |||||||||| |||| Sbjct: 4855 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 4796 Query: 555 ttgcccggtattgttt 570 |||||| ||||||||| Sbjct: 4795 ttgccctgtattgttt 4780
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 135 bits (68), Expect = 2e-28 Identities = 137/162 (84%) Strand = Plus / Plus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 19118780 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437 | ||||||||||||| |||| ||| || ||||||||||||| Sbjct: 19118781 tatcccatctcttgcttctttcaagccgagcaagcccttcct 19118822 Score = 99.6 bits (50), Expect = 1e-17 Identities = 114/136 (83%) Strand = Plus / Plus Query: 435 cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494 |||||||||||| |||||||||||||| ||||||||||| ||||| || || ||||| | Sbjct: 19119017 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 19119076 Query: 495 gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554 ||| || ||||||||||| ||||| |||||||| | ||| |||||||||| |||| Sbjct: 19119077 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 19119136 Query: 555 ttgcccggtattgttt 570 |||||| ||||||||| Sbjct: 19119137 ttgccctgtattgttt 19119152
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 135 bits (68), Expect = 2e-28 Identities = 137/162 (84%) Strand = Plus / Plus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 17029 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437 | ||||||||||||| |||| ||| || ||||||||||||| Sbjct: 17030 tatcccatctcttgcttctttcaagccgagcaagcccttcct 17071 Score = 99.6 bits (50), Expect = 1e-17 Identities = 114/136 (83%) Strand = Plus / Plus Query: 435 cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494 |||||||||||| |||||||||||||| ||||||||||| ||||| || || ||||| | Sbjct: 17266 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 17325 Query: 495 gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554 ||| || ||||||||||| ||||| |||||||| | ||| |||||||||| |||| Sbjct: 17326 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 17385 Query: 555 ttgcccggtattgttt 570 |||||| ||||||||| Sbjct: 17386 ttgccctgtattgttt 17401
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 135 bits (68), Expect = 2e-28 Identities = 137/162 (84%) Strand = Plus / Plus Query: 276 ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335 |||||||||||||||||||||| |||||||| || ||||||||||| | |||| |||| Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241 Query: 336 ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395 ||||||| || |||| |||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 124301 Query: 396 tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437 | ||||||||||||| |||| ||| || ||||||||||||| Sbjct: 124302 tatcccatctcttgcttctttcaagccgagcaagcccttcct 124343 Score = 99.6 bits (50), Expect = 1e-17 Identities = 114/136 (83%) Strand = Plus / Plus Query: 435 cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494 |||||||||||| |||||||||||||| ||||||||||| ||||| || || ||||| | Sbjct: 124538 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 124597 Query: 495 gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554 ||| || ||||||||||| ||||| |||||||| | ||| |||||||||| |||| Sbjct: 124598 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 124657 Query: 555 ttgcccggtattgttt 570 |||||| ||||||||| Sbjct: 124658 ttgccctgtattgttt 124673
>gb|AY112472.1| Zea mays CL152_1 mRNA sequence Length = 1436 Score = 135 bits (68), Expect = 2e-28 Identities = 124/144 (86%) Strand = Plus / Minus Query: 356 aactgttccangttctngagagctgncttcctctcctttgtgtcccatctcttgcccctt 415 |||||||||| ||||| |||||| | |||||||||| | |||||||||||||||| ||| Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcccatctcttgcttctt 917 Query: 416 tnaagtcgggcaagcccttcctcaagcatggcagcattgatgctggattctgtctctgga 475 | || ||||||||||||||||||||||||| ||| || ||||| ||||||||| | | Sbjct: 916 tcgagccgggcaagcccttcctcaagcatggtagcgtttatgctactttctgtctccgca 857 Query: 476 tcaacaagagtcacaatgagaaca 499 ||||||||||| |||||||||||| Sbjct: 856 tcaacaagagtaacaatgagaaca 833 Score = 48.1 bits (24), Expect = 0.033 Identities = 41/47 (87%) Strand = Plus / Minus Query: 545 tcttcgatcattgcccggtattgtttngaactgcttagcaagcattc 591 ||||||||||||||||||||||| || || || || ||||| ||||| Sbjct: 787 tcttcgatcattgcccggtattgctttgagctactgagcaaacattc 741
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, complete cds Length = 3379 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 425 gcaagcccttcctcaagcatggcagcattga 455 ||||| ||||||| ||||||||||||||||| Sbjct: 2986 gcaagtccttcctgaagcatggcagcattga 2956
>dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, partial cds Length = 2343 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 425 gcaagcccttcctcaagcatggcagcattga 455 ||||| ||||||| ||||||||||||||||| Sbjct: 1922 gcaagtccttcctgaagcatggcagcattga 1892
>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13, complete sequence Length = 165993 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 160 ttcatataagctctcgactgagtttc 185 |||||||| ||||||||||||||||| Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
>gb|DQ497803.1| Taeniatherum caput-medusae subsp. caput-medusae plastid acetyl-CoA carboxylase gene, partial cds; nuclear gene for plastid product Length = 1437 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ccttcacttttccaccggtag 536 ||||||||||||||||||||| Sbjct: 981 ccttcacttttccaccggtag 961
>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or two novel genes, a repressor of protein-kinase (interferon-inducible double stranded RNA dependent inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG island, complete sequence Length = 127862 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 ctggattctgtctctggatca 478 ||||||||||||||||||||| Sbjct: 103799 ctggattctgtctctggatca 103819
>gb|AC144777.3| Mus musculus BAC clone RP23-370N15 from chromosome unknown, complete sequence Length = 201349 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 tgtctctggatcaacaagagtcaca 490 |||||||||||||| |||||||||| Sbjct: 27654 tgtctctggatcaaaaagagtcaca 27630
>gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome unknown, complete sequence Length = 190953 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 466 tgtctctggatcaacaagagtcaca 490 |||||||||||||| |||||||||| Sbjct: 13965 tgtctctggatcaaaaagagtcaca 13989
>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence Length = 168910 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 ttcttactaagttttcatata 167 ||||||||||||||||||||| Sbjct: 141218 ttcttactaagttttcatata 141198
>gb|DQ319180.1| Leymus secalinus plastid acetyl-CoA carboxylase gene, partial cds; nuclear gene for plastid product Length = 1445 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ccttcacttttccaccggtag 536 ||||||||||||||||||||| Sbjct: 981 ccttcacttttccaccggtag 961
>emb|BX005471.10| Mouse DNA sequence from clone RP23-18E5 on chromosome X, complete sequence Length = 141331 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 tgtctctggatcaacaagagtcaca 490 |||||||||||||| |||||||||| Sbjct: 51152 tgtctctggatcaaaaagagtcaca 51128
>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds Length = 3295 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 tcttcctcgtcggattcaacgtctccat 314 ||||| ||||||| |||||||||||||| Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence Length = 157629 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 cagcattgatgctggattct 466 |||||||||||||||||||| Sbjct: 92820 cagcattgatgctggattct 92801
>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2 Contains the 5' end of a novel gene, complete sequence Length = 94056 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ctctcctttgtgtcccatct 405 |||||||||||||||||||| Sbjct: 81672 ctctcctttgtgtcccatct 81691
>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence Length = 1920 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 tcttcctcgtcggattcaacgtctccat 314 ||||| ||||||| |||||||||||||| Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence Length = 107200 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 287 tcttcctcgtcggattcaacgtctccat 314 ||||| ||||||| |||||||||||||| Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017
>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence Length = 195979 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgctggattctgtctctgga 475 |||||||||||||||||||| Sbjct: 69007 tgctggattctgtctctgga 69026
>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2808 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 tcttcctcgtcggattcaacgtctccat 314 ||||| ||||||| |||||||||||||| Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660
>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence Length = 149462 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ccaaaactttcatatctaaa 214 |||||||||||||||||||| Sbjct: 29599 ccaaaactttcatatctaaa 29580
>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185470 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gtgtccaaaactttcatatc 210 |||||||||||||||||||| Sbjct: 41312 gtgtccaaaactttcatatc 41293
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence Length = 195874 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 cagcattgatgctggattct 466 |||||||||||||||||||| Sbjct: 137517 cagcattgatgctggattct 137536
>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete sequences Length = 175110 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaactttcatatctaaacca 217 |||||||||||||||||||| Sbjct: 139050 aaactttcatatctaaacca 139031
>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete sequences Length = 170973 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaactttcatatctaaacca 217 |||||||||||||||||||| Sbjct: 31136 aaactttcatatctaaacca 31117
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence Length = 226189 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 cagcattgatgctggattct 466 |||||||||||||||||||| Sbjct: 148645 cagcattgatgctggattct 148626 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,280,587 Number of Sequences: 3902068 Number of extensions: 4280587 Number of successful extensions: 71378 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71279 Number of HSP's gapped (non-prelim): 99 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)