ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full ... 260 5e-66
2ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 228 2e-56
3gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 228 2e-56
4dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
5dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
6gb|BT016256.1| Zea mays clone Contig89 mRNA sequence 194 2e-46
7gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 135 2e-28
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
9dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
10dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
11gb|AY112472.1| Zea mays CL152_1 mRNA sequence 135 2e-28
12dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 46 0.13
13dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 46 0.13
14emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.51
15gb|DQ497803.1| Taeniatherum caput-medusae subsp. caput-medusae p... 42 2.0
16emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on ch... 42 2.0
17gb|AC144777.3| Mus musculus BAC clone RP23-370N15 from chromosom... 42 2.0
18gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome... 42 2.0
19emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 2.0
20gb|DQ319180.1| Leymus secalinus plastid acetyl-CoA carboxylase g... 42 2.0
21emb|BX005471.10| Mouse DNA sequence from clone RP23-18E5 on chro... 42 2.0
22ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 ... 40 8.0
23gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 40 8.0
24emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chr... 40 8.0
25gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence 40 8.0
26gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 40 8.0
27gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, co... 40 8.0
28emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Co... 40 8.0
29gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 8.0
30gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cance... 40 8.0
31gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 40 8.0
32dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.0
33dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.0
34gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 8.0

>gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full insert mRNA sequence
          Length = 1394

 Score =  260 bits (131), Expect = 5e-66
 Identities = 146/152 (96%)
 Strand = Plus / Minus

                                                                        
Query: 440  agcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatgagaaca 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 agcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatgagaaca 1330

                                                                        
Query: 500  ggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatcattgcc 559
            || ||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 1329 ggtccagtgccttgtcccttcacttttccaccagtagtgtcgcgctcttcgatcattgcc 1270

                                            
Query: 560  cggtattgtttngaactgcttagcaagcattc 591
            ||||||||||| ||||||||||||||||||||
Sbjct: 1269 cggtattgttttgaactgcttagcaagcattc 1238



to top

>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  228 bits (115), Expect = 2e-56
 Identities = 248/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094

                                                                        
Query: 336  ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
            ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3034

                                                                        
Query: 396  tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455
            | |||||||||||||  |||| ||| || |||||||||||||||||||||| ||||||||
Sbjct: 3033 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2974

                                                                        
Query: 456  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515
            |||||| |||||||||||  ||||| || || ||||| |||| ||  ||||||||||| |
Sbjct: 2973 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 2914

                                                                   
Query: 516  ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570
            ||||    |||||||| | |||  |||||||||| |||||||||| |||||||||
Sbjct: 2913 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 2859



to top

>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score =  228 bits (115), Expect = 2e-56
 Identities = 248/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873

                                                                        
Query: 336  ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
            ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 2813

                                                                        
Query: 396  tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455
            | |||||||||||||  |||| ||| || |||||||||||||||||||||| ||||||||
Sbjct: 2812 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2753

                                                                        
Query: 456  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515
            |||||| |||||||||||  ||||| || || ||||| |||| ||  ||||||||||| |
Sbjct: 2752 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 2693

                                                                   
Query: 516  ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570
            ||||    |||||||| | |||  |||||||||| |||||||||| |||||||||
Sbjct: 2692 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 2638



to top

>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score =  228 bits (115), Expect = 2e-56
 Identities = 248/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092

                                                                        
Query: 336  ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
            ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3032

                                                                        
Query: 396  tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455
            | |||||||||||||  |||| ||| || |||||||||||||||||||||| ||||||||
Sbjct: 3031 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2972

                                                                        
Query: 456  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515
            |||||| |||||||||||  ||||| || || ||||| |||| ||  ||||||||||| |
Sbjct: 2971 tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 2912

                                                                   
Query: 516  ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570
            ||||    |||||||| | |||  |||||||||| |||||||||| |||||||||
Sbjct: 2911 ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 2857



to top

>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score =  228 bits (115), Expect = 2e-56
 Identities = 248/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110

                                                                        
Query: 336  ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
            ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 1050

                                                                        
Query: 396  tgtcccatctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattga 455
            | |||||||||||||  |||| ||| || |||||||||||||||||||||| ||||||||
Sbjct: 1049 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 990

                                                                        
Query: 456  tgctggattctgtctctggatcaacaagagtcacaatgagaacaggnccagtgccttgac 515
            |||||| |||||||||||  ||||| || || ||||| |||| ||  ||||||||||| |
Sbjct: 989  tgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtc 930

                                                                   
Query: 516  ccttcacttttccaccggtagtgncacgctcttcgatcattgcccggtattgttt 570
            ||||    |||||||| | |||  |||||||||| |||||||||| |||||||||
Sbjct: 929  ccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgttt 875



to top

>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence
          Length = 1657

 Score =  194 bits (98), Expect = 2e-46
 Identities = 185/216 (85%)
 Strand = Plus / Minus

                                                                        
Query: 284  tgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagnctttccttcttc 343
            ||||| |||||||| |||||||| ||||| |||||||| |  ||||| ||||||||||| 
Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291

                                                                        
Query: 344  gccttctnctggaactgttccangttctngagagctgncttcctctcctttgtgtcccat 403
            ||||| | |||||||||||||| ||||| |||||| | |||||||||| | |||||||||
Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcccat 1231

                                                                        
Query: 404  ctcttgcccctttnaagtcgggcaagcccttcctcaagcatggcagcattgatgctggat 463
            |||||||  ||||  || ||||||||||||||||||||||||| ||| || |||||   |
Sbjct: 1230 ctcttgcttctttcgagccgggcaagcccttcctcaagcatggtagcgtttatgctactt 1171

                                                
Query: 464  tctgtctctggatcaacaagagtcacaatgagaaca 499
            |||||||| | |||||||||||| ||||||||||||
Sbjct: 1170 tctgtctccgcatcaacaagagtaacaatgagaaca 1135



to top

>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/162 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212

                                                                        
Query: 336  ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
            ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 5152

                                                      
Query: 396  tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437
            | |||||||||||||  |||| ||| || |||||||||||||
Sbjct: 5151 tatcccatctcttgcttctttcaagccgagcaagcccttcct 5110



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 114/136 (83%)
 Strand = Plus / Minus

                                                                        
Query: 435  cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494
            |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 4915 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 4856

                                                                        
Query: 495  gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554
            ||| ||  ||||||||||| |||||    |||||||| | |||  |||||||||| ||||
Sbjct: 4855 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 4796

                            
Query: 555  ttgcccggtattgttt 570
            |||||| |||||||||
Sbjct: 4795 ttgccctgtattgttt 4780



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/162 (84%)
 Strand = Plus / Plus

                                                                            
Query: 276      ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
                |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720

                                                                            
Query: 336      ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
                ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 19118780

                                                          
Query: 396      tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437
                | |||||||||||||  |||| ||| || |||||||||||||
Sbjct: 19118781 tatcccatctcttgcttctttcaagccgagcaagcccttcct 19118822



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                            
Query: 435      cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494
                |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 19119017 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 19119076

                                                                            
Query: 495      gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554
                ||| ||  ||||||||||| |||||    |||||||| | |||  |||||||||| ||||
Sbjct: 19119077 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 19119136

                                
Query: 555      ttgcccggtattgttt 570
                |||||| |||||||||
Sbjct: 19119137 ttgccctgtattgttt 19119152



to top

>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/162 (84%)
 Strand = Plus / Plus

                                                                         
Query: 276   ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
             |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969

                                                                         
Query: 336   ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
             ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 17029

                                                       
Query: 396   tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437
             | |||||||||||||  |||| ||| || |||||||||||||
Sbjct: 17030 tatcccatctcttgcttctttcaagccgagcaagcccttcct 17071



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                         
Query: 435   cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494
             |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 17266 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 17325

                                                                         
Query: 495   gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554
             ||| ||  ||||||||||| |||||    |||||||| | |||  |||||||||| ||||
Sbjct: 17326 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 17385

                             
Query: 555   ttgcccggtattgttt 570
             |||||| |||||||||
Sbjct: 17386 ttgccctgtattgttt 17401



to top

>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  135 bits (68), Expect = 2e-28
 Identities = 137/162 (84%)
 Strand = Plus / Plus

                                                                          
Query: 276    ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagncttt 335
              |||||||||||||||||||||| |||||||| || ||||||||||| |   |||| ||||
Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241

                                                                          
Query: 336    ccttcttcgccttctnctggaactgttccangttctngagagctgncttcctctcctttg 395
              ||||||| || |||| ||||||||||||||  |||| |||||| | ||| |||||| | |
Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 124301

                                                        
Query: 396    tgtcccatctcttgcccctttnaagtcgggcaagcccttcct 437
              | |||||||||||||  |||| ||| || |||||||||||||
Sbjct: 124302 tatcccatctcttgcttctttcaagccgagcaagcccttcct 124343



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                          
Query: 435    cctcaagcatggcagcattgatgctggattctgtctctggatcaacaagagtcacaatga 494
              |||||||||||| |||||||||||||| |||||||||||  ||||| || || ||||| |
Sbjct: 124538 cctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatca 124597

                                                                          
Query: 495    gaacaggnccagtgccttgacccttcacttttccaccggtagtgncacgctcttcgatca 554
              ||| ||  ||||||||||| |||||    |||||||| | |||  |||||||||| ||||
Sbjct: 124598 gaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatca 124657

                              
Query: 555    ttgcccggtattgttt 570
              |||||| |||||||||
Sbjct: 124658 ttgccctgtattgttt 124673



to top

>gb|AY112472.1| Zea mays CL152_1 mRNA sequence
          Length = 1436

 Score =  135 bits (68), Expect = 2e-28
 Identities = 124/144 (86%)
 Strand = Plus / Minus

                                                                       
Query: 356 aactgttccangttctngagagctgncttcctctcctttgtgtcccatctcttgcccctt 415
           |||||||||| ||||| |||||| | |||||||||| | ||||||||||||||||  |||
Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcccatctcttgcttctt 917

                                                                       
Query: 416 tnaagtcgggcaagcccttcctcaagcatggcagcattgatgctggattctgtctctgga 475
           |  || ||||||||||||||||||||||||| ||| || |||||   ||||||||| | |
Sbjct: 916 tcgagccgggcaagcccttcctcaagcatggtagcgtttatgctactttctgtctccgca 857

                                   
Query: 476 tcaacaagagtcacaatgagaaca 499
           ||||||||||| ||||||||||||
Sbjct: 856 tcaacaagagtaacaatgagaaca 833



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 545 tcttcgatcattgcccggtattgtttngaactgcttagcaagcattc 591
           ||||||||||||||||||||||| || || || || ||||| |||||
Sbjct: 787 tcttcgatcattgcccggtattgctttgagctactgagcaaacattc 741



to top

>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
            complete cds
          Length = 3379

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 425  gcaagcccttcctcaagcatggcagcattga 455
            ||||| ||||||| |||||||||||||||||
Sbjct: 2986 gcaagtccttcctgaagcatggcagcattga 2956



to top

>dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
            partial cds
          Length = 2343

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 425  gcaagcccttcctcaagcatggcagcattga 455
            ||||| ||||||| |||||||||||||||||
Sbjct: 1922 gcaagtccttcctgaagcatggcagcattga 1892



to top

>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 160    ttcatataagctctcgactgagtttc 185
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306



to top

>gb|DQ497803.1| Taeniatherum caput-medusae subsp. caput-medusae plastid acetyl-CoA
           carboxylase gene, partial cds; nuclear gene for plastid
           product
          Length = 1437

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 516 ccttcacttttccaccggtag 536
           |||||||||||||||||||||
Sbjct: 981 ccttcacttttccaccggtag 961



to top

>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or
              two novel genes, a repressor of protein-kinase
              (interferon-inducible double stranded RNA dependent
              inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG
              island, complete sequence
          Length = 127862

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 458    ctggattctgtctctggatca 478
              |||||||||||||||||||||
Sbjct: 103799 ctggattctgtctctggatca 103819



to top

>gb|AC144777.3| Mus musculus BAC clone RP23-370N15 from chromosome unknown, complete
             sequence
          Length = 201349

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 466   tgtctctggatcaacaagagtcaca 490
             |||||||||||||| ||||||||||
Sbjct: 27654 tgtctctggatcaaaaagagtcaca 27630



to top

>gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome unknown, complete
             sequence
          Length = 190953

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 466   tgtctctggatcaacaagagtcaca 490
             |||||||||||||| ||||||||||
Sbjct: 13965 tgtctctggatcaaaaagagtcaca 13989



to top

>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    ttcttactaagttttcatata 167
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198



to top

>gb|DQ319180.1| Leymus secalinus plastid acetyl-CoA carboxylase gene, partial cds;
           nuclear gene for plastid product
          Length = 1445

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 516 ccttcacttttccaccggtag 536
           |||||||||||||||||||||
Sbjct: 981 ccttcacttttccaccggtag 961



to top

>emb|BX005471.10| Mouse DNA sequence from clone RP23-18E5 on chromosome X, complete
             sequence
          Length = 141331

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 466   tgtctctggatcaacaagagtcaca 490
             |||||||||||||| ||||||||||
Sbjct: 51152 tgtctctggatcaaaaagagtcaca 51128



to top

>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds
          Length = 3295

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 tcttcctcgtcggattcaacgtctccat 314
           ||||| ||||||| ||||||||||||||
Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728



to top

>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   cagcattgatgctggattct 466
             ||||||||||||||||||||
Sbjct: 92820 cagcattgatgctggattct 92801



to top

>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2
             Contains the 5' end of a novel gene, complete sequence
          Length = 94056

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   ctctcctttgtgtcccatct 405
             ||||||||||||||||||||
Sbjct: 81672 ctctcctttgtgtcccatct 81691



to top

>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 tcttcctcgtcggattcaacgtctccat 314
           ||||| ||||||| ||||||||||||||
Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719



to top

>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 287   tcttcctcgtcggattcaacgtctccat 314
             ||||| ||||||| ||||||||||||||
Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017



to top

>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence
          Length = 195979

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tgctggattctgtctctgga 475
             ||||||||||||||||||||
Sbjct: 69007 tgctggattctgtctctgga 69026



to top

>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2808

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 tcttcctcgtcggattcaacgtctccat 314
           ||||| ||||||| ||||||||||||||
Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660



to top

>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   ccaaaactttcatatctaaa 214
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580



to top

>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185470

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   gtgtccaaaactttcatatc 210
             ||||||||||||||||||||
Sbjct: 41312 gtgtccaaaactttcatatc 41293



to top

>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    cagcattgatgctggattct 466
              ||||||||||||||||||||
Sbjct: 137517 cagcattgatgctggattct 137536



to top

>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    aaactttcatatctaaacca 217
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031



to top

>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   aaactttcatatctaaacca 217
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117



to top

>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    cagcattgatgctggattct 466
              ||||||||||||||||||||
Sbjct: 148645 cagcattgatgctggattct 148626


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,280,587
Number of Sequences: 3902068
Number of extensions: 4280587
Number of successful extensions: 71378
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71279
Number of HSP's gapped (non-prelim): 99
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top