ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13g13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine synthetase 1 mRNA, complete cds Length = 1973 Score = 383 bits (193), Expect = e-103 Identities = 203/208 (97%) Strand = Plus / Minus Query: 1 ctaatggcaagactaggtacatcttatttcttatcagaaacggcaagcaggacaggacac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1891 ctaatggcaagactaggtacatcttatttcttatcagaaacggcaagcaggacaggacac 1832 Query: 61 catcaactctcaatngcgacaccaggngccgcanccttgatcatnctcggcttcttgctg 120 |||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct: 1831 catcaactctcaattgcgacaccaggtgccgcaaccttgatcatcctcggcttcttgctg 1772 Query: 121 gttcctgccatgatggttgntgggagatgctcctgctcataggccgagagatggactcca 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1771 gttcctgccatgatggttgctgggagatgctcctgctcataggccgagagatggactcca 1712 Query: 181 agtgctgctctccctgagggatccaggt 208 |||||||||||||||||||||||||||| Sbjct: 1711 agtgctgctctccctgagggatccaggt 1684
>gb|BT009245.1| Triticum aestivum clone wlk1.pk0018.d4:fis, full insert mRNA sequence Length = 2064 Score = 351 bits (177), Expect = 5e-94 Identities = 199/208 (95%) Strand = Plus / Minus Query: 1 ctaatggcaagactaggtacatcttatttcttatcagaaacggcaagcaggacaggacac 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1875 ctaatggcaagaccaggtacatcttatttcttatcagaaacggcaagcaggacaggacac 1816 Query: 61 catcaactctcaatngcgacaccaggngccgcanccttgatcatnctcggcttcttgctg 120 |||||||||||||| ||||||||||| |||||| ||| |||||| || |||||||||||| Sbjct: 1815 catcaactctcaattgcgacaccaggcgccgcaacctcgatcatccttggcttcttgctg 1756 Query: 121 gttcctgccatgatggttgntgggagatgctcctgctcataggccgagagatggactcca 180 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct: 1755 gttcctgccatgatggttgctgggagatgctcctgttcataggccgagagatggactcca 1696 Query: 181 agtgctgctctccctgagggatccaggt 208 |||||||||||||||||||||||||||| Sbjct: 1695 agtgctgctctccctgagggatccaggt 1668
>gb|AY621539.1| Triticum aestivum glutamine-dependent asparagine synthetase (ASN1) mRNA, complete cds Length = 1815 Score = 285 bits (144), Expect = 3e-74 Identities = 160/167 (95%) Strand = Plus / Minus Query: 42 ggcaagcaggacaggacaccatcaactctcaatngcgacaccaggngccgcanccttgat 101 ||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||| Sbjct: 1800 ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgcaacctcgat 1741 Query: 102 catnctcggcttcttgctggttcctgccatgatggttgntgggagatgctcctgctcata 161 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 1740 catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgttcata 1681 Query: 162 ggccgagagatggactccaagtgctgctctccctgagggatccaggt 208 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1680 ggccgagagatggactccaagtgctgctctccctgagggatccaggt 1634
>gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRNA, complete cds Length = 1867 Score = 75.8 bits (38), Expect = 5e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 151 tcctgctcataggccgagagatggactccaagtgctgctctccctgagggatccaggt 208 |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 1670 tcctgctcgtaggctgagagatggactccaagcgctgctctcccagaggggtccaggt 1613
>gb|BT009049.1| Triticum aestivum clone wdk9n1.pk001.f6:fis, full insert mRNA sequence Length = 2119 Score = 75.8 bits (38), Expect = 5e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 151 tcctgctcataggccgagagatggactccaagtgctgctctccctgagggatccaggt 208 |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 1739 tcctgctcgtaggctgagagatggactccaagcgctgctctcccagaggggtccaggt 1682
>emb|X52179.1|PSAS1 Pea AS1 nodule mRNA for asparagine synthase (EC 6.3.5.4) Length = 2200 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Minus Query: 175 actccaagtgctgctctccctgagggatccaggt 208 ||||||||||||||||| || || |||||||||| Sbjct: 1742 actccaagtgctgctctaccagaaggatccaggt 1709
>emb|AJ133522.1|PVU133522 Phaseolus vulgaris mRNA for asparagine synthetase type-I Length = 2086 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Minus Query: 175 actccaagtgctgctctccctgagggatccaggt 208 ||||||||||||||||| ||||| ||||| |||| Sbjct: 1793 actccaagtgctgctctacctgatggatcaaggt 1760
>gb|U77679.1|GMU77679 Glycine max asparagine synthetase 1 (AS1) mRNA, complete cds Length = 2108 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Minus Query: 175 actccaagtgctgctctccctgagggatccaggt 208 ||||||||||||||||| ||||| ||||| |||| Sbjct: 1796 actccaagtgctgctctacctgatggatcaaggt 1763
>gb|U77678.1|GMU77678 Glycine max asparagine synthetase 2 (AS2) mRNA, complete cds Length = 2143 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Minus Query: 175 actccaagtgctgctctccctgagggatccaggt 208 ||||||||||||||||| || |||||||| |||| Sbjct: 1800 actccaagtgctgctctaccagagggatcaaggt 1767
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gatgctcctgctcataggcc 165 |||||||||||||||||||| Sbjct: 2224484 gatgctcctgctcataggcc 2224503
>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the 3' end of the COL4A2 gene for collagen type IV alpha 2, the RAB20 gene for a RAS oncogene family member, a novel gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel gene (FLJ12118) and three CpG islands, complete sequence Length = 177392 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 tcttgctggttcctgccatgatgg 136 |||||||| ||||||||||||||| Sbjct: 8457 tcttgctgtttcctgccatgatgg 8480
>emb|X89409.1|LJAS1GENE L.japonicus mRNA for asparagine synthetase (clone LJAS1) Length = 2053 Score = 40.1 bits (20), Expect = 2.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 169 agatggactccaagtgctgctctccctgagggatccaggt 208 ||||| ||||| ||||||||||| ||||| ||||| |||| Sbjct: 1750 agatgcactcctagtgctgctctacctgaaggatcaaggt 1711
>gb|AC087692.7| Homo sapiens chromosome 8, clone RP11-67D13, complete sequence Length = 146549 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 gtgctgctctccctgagggatcca 205 |||||||||||| ||||||||||| Sbjct: 3400 gtgctgctctccatgagggatcca 3423
>gb|AC021523.8| Homo sapiens chromosome 8, clone RP11-336N16, complete sequence Length = 170299 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 gtgctgctctccctgagggatcca 205 |||||||||||| ||||||||||| Sbjct: 156531 gtgctgctctccatgagggatcca 156554
>gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, complete sequence Length = 248067 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 gtgctgctctccctgagggatcca 205 ||||||||||||| |||||||||| Sbjct: 165502 gtgctgctctcccagagggatcca 165479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,381,682 Number of Sequences: 3902068 Number of extensions: 1381682 Number of successful extensions: 104496 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104464 Number of HSP's gapped (non-prelim): 32 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
