>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  129 bits (65), Expect = 1e-26
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                            
Query: 460      tgccttcacaatacggaacaaatccttgatggtagcaaagttatcctcctgtgtacagat 519
                ||||||||| |  ||||||| |||||||||||  ||||| ||||||||||||| |||| |
Sbjct: 14332075 tgccttcacgacgcggaacagatccttgatggcggcaaatttatcctcctgtgcacagct 14332016

                                                                            
Query: 520      cgccttatctttagtcgcacagcgtcgcttcccgtaattagcctcaaagtcaattgactt 579
                 | |||||  || ||   || | |||||||||||||| | ||||| |||||| |||||||
Sbjct: 14332015 gggcttattctttgttataccgggtcgcttcccgtaactggcctcgaagtcacttgactt 14331956

                                                         
Query: 580      ctcattagccctttgaagcactgatgcgggtattcctggat 620
                ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 14331955 ctcattagccctttgaagcactgatgcaggtattcctggat 14331915

>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1261_A08
          Length = 162113

 Score =  129 bits (65), Expect = 1e-26
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                          
Query: 460    tgccttcacaatacggaacaaatccttgatggtagcaaagttatcctcctgtgtacagat 519
              ||||||||| |  ||||||| |||||||||||  ||||| ||||||||||||| |||| |
Sbjct: 148620 tgccttcacgacgcggaacagatccttgatggcggcaaatttatcctcctgtgcacagct 148561

                                                                          
Query: 520    cgccttatctttagtcgcacagcgtcgcttcccgtaattagcctcaaagtcaattgactt 579
               | |||||  || ||   || | |||||||||||||| | ||||| |||||| |||||||
Sbjct: 148560 gggcttattctttgttataccgggtcgcttcccgtaactggcctcgaagtcacttgactt 148501

                                                       
Query: 580    ctcattagccctttgaagcactgatgcgggtattcctggat 620
              ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148500 ctcattagccctttgaagcactgatgcaggtattcctggat 148460

>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score =  129 bits (65), Expect = 1e-26
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                         
Query: 460   tgccttcacaatacggaacaaatccttgatggtagcaaagttatcctcctgtgtacagat 519
             ||||||||| |  ||||||| |||||||||||  ||||| ||||||||||||| |||| |
Sbjct: 23878 tgccttcacgacgcggaacagatccttgatggcggcaaatttatcctcctgtgcacagct 23819

                                                                         
Query: 520   cgccttatctttagtcgcacagcgtcgcttcccgtaattagcctcaaagtcaattgactt 579
              | |||||  || ||   || | |||||||||||||| | ||||| |||||| |||||||
Sbjct: 23818 gggcttattctttgttataccgggtcgcttcccgtaactggcctcgaagtcacttgactt 23759

                                                      
Query: 580   ctcattagccctttgaagcactgatgcgggtattcctggat 620
             ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 23758 ctcattagccctttgaagcactgatgcaggtattcctggat 23718

>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
             sequence
          Length = 120132

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                         
Query: 543   gtcgcttcccgtaattagcctcaaagtcaattgacttctcattagccctttgaagcactg 602
             |||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||||||
Sbjct: 88828 gtcgcttcccgtaattggcctcaaagtcacttgacttttcatttgctctttgaagcactg 88887

                            
Query: 603   atgcgggtattcctg 617
             | |  ||||||||||
Sbjct: 88888 aagtaggtattcctg 88902



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 460   tgccttcacaatacggaacaaatccttgatgg 491
             |||||||||||| | |||||||||| ||||||
Sbjct: 88742 tgccttcacaatgcagaacaaatccctgatgg 88773

>gb|AF227632.1|AF227632 Zea mays mismatch binding protein Mus3 (mus3) mRNA, partial cds
          Length = 2342

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 543  gtcgcttcccgtaattagcctcaaagtcaattgacttctcattagccctttgaagca 599
            |||||||||||||||| |||||||| ||| | ||||| ||||| || ||||||||||
Sbjct: 1734 gtcgcttcccgtaattggcctcaaattcactcgacttttcattcgctctttgaagca 1678

>gb|AY206863.1| Lactobacillus sakei IP-TX (stxP), StxR (stxR), StxK (stxK), StxT
            (stxT), SakT alpha (sakT alpha), SakT beta (sakT beta),
            SakTIM (sakTIM), SakX (sakX), SakXIM (sakXIM), brochocin
            immunity protein BcrI-like protein, hypothetical protein,
            and unknown protein genes, complete cds; and hypothetical
            protein gene, partial cds
          Length = 17243

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 479  aaatccttgatggtagcaaagtta 502
            ||||||||||||||||||||||||
Sbjct: 4665 aaatccttgatggtagcaaagtta 4642

>gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosome 10, complete
             sequence
          Length = 175143

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 310   ccaagcaggcaaaagaaagaa 330
             |||||||||||||||||||||
Sbjct: 14700 ccaagcaggcaaaagaaagaa 14680

>gb|AC158799.8| Mus musculus  BAC RP24-430K11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 161705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   ccaagcaggcaaaagaaagaa 330
             |||||||||||||||||||||
Sbjct: 78048 ccaagcaggcaaaagaaagaa 78068

>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence
          Length = 170634

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 565   aaagtcaattgacttctcatt 585
             |||||||||||||||||||||
Sbjct: 36873 aaagtcaattgacttctcatt 36893

>gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delta locus from bases 250472 to
              501670 (section 2 of 5) of the Complete Nucleotide Sequence
          Length = 251199

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    caagcaggcaaaagaaagaa 330
              ||||||||||||||||||||
Sbjct: 194464 caagcaggcaaaagaaagaa 194445

>gb|AC162901.4| Mus musculus BAC clone RP23-417K5 from chromosome 8, complete sequence
          Length = 205244

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   gacaccaagcaggcaaaaga 325
             ||||||||||||||||||||
Sbjct: 27011 gacaccaagcaggcaaaaga 27030

>emb|BX927290.22| Zebrafish DNA sequence from clone CH211-212K5 in linkage group 14,
             complete sequence
          Length = 222032

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   accaagcaggcaaaagaaag 328
             ||||||||||||||||||||
Sbjct: 24162 accaagcaggcaaaagaaag 24143

>emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chromosome 9 Contains a
             novel  gene (KIAA2015), a novel gene, a tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation
             protein, beta polypeptide (YWHAB) pseudogene and two CpG
             islands, complete sequence
          Length = 179501

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   aagaactggggcaaatctcc 345
             ||||||||||||||||||||
Sbjct: 67007 aagaactggggcaaatctcc 66988

>emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chromosome 1 Contains the
              VANGL1 gene for vang-like 1 (van gogh, Drosophila), the 3'
              end of the CASQ2 gene for calsequestrin 2 (cardiac muscle)
              and one CpG island, complete sequence
          Length = 101623

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    aagaactggggcaaatctcc 345
              ||||||||||||||||||||
Sbjct: 100601 aagaactggggcaaatctcc 100620

>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the
            5' end of the CASQ2 gene for calsequestrin 2 (cardiac
            muscle), the NHLH2 gene for nescient helix loop helix 2,
            a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
            pseudogene and two CpG islands, complete sequence
          Length = 164655

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  aagaactggggcaaatctcc 345
            ||||||||||||||||||||
Sbjct: 3704 aagaactggggcaaatctcc 3723

>emb|AL445464.9| Human DNA sequence from clone RP11-262K24 on chromosome 1 Contains the
             3' end of the MSH4 gene for mutS homolog 4 (E. coli) and
             the 3' end of the ASB17 gene for ankyrin repeat and SOCS
             box-containing 17, complete sequence
          Length = 103097

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   caagcaggcaaaagaaagaa 330
             ||||||||||||||||||||
Sbjct: 10455 caagcaggcaaaagaaagaa 10474

>emb|X95394.1|AREXOYGEN A.radiobacter exoY, aldA, oatA genes and ORF1
          Length = 4530

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  gcgcacgcgccaataccgca 278
            ||||||||||||||||||||
Sbjct: 3670 gcgcacgcgccaataccgca 3689

>emb|CR354536.8| Zebrafish DNA sequence from clone DKEY-101K8 in linkage group 17,
             complete sequence
          Length = 157228

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   accaagcaggcaaaagaaag 328
             ||||||||||||||||||||
Sbjct: 60178 accaagcaggcaaaagaaag 60159

>emb|BX649454.14| Zebrafish DNA sequence from clone DKEYP-100H4 in linkage group 14,
             complete sequence
          Length = 167507

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   accaagcaggcaaaagaaag 328
             ||||||||||||||||||||
Sbjct: 21580 accaagcaggcaaaagaaag 21599

>emb|BX548254.7| Zebrafish DNA sequence from clone CH211-243D12 in linkage group 16,
              complete sequence
          Length = 149138

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 307    acaccaagcaggcaaaagaaagaa 330
              |||||||| |||||||||||||||
Sbjct: 122844 acaccaagaaggcaaaagaaagaa 122821

>gb|AY268350.1| Homo sapiens mutS homolog 4 (E. coli) (MSH4) gene, complete cds
          Length = 118484

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   caagcaggcaaaagaaagaa 330
             ||||||||||||||||||||
Sbjct: 36908 caagcaggcaaaagaaagaa 36927

>gb|AC026412.4| Homo sapiens chromosome 5 clone CTD-2012J19, complete sequence
          Length = 128694

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   agaagtagatccaagaactt 252
             ||||||||||||||||||||
Sbjct: 78831 agaagtagatccaagaactt 78850

>emb|X15438.1|VCMUTL Vibrio cholerae mutL gene
          Length = 2548

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 586  agccctttgaagcactgatg 605
            ||||||||||||||||||||
Sbjct: 2437 agccctttgaagcactgatg 2456

>gb|AC124491.5| Mus musculus BAC clone RP23-454B2 from chromosome 8, complete sequence
          Length = 187779

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    gacaccaagcaggcaaaaga 325
              ||||||||||||||||||||
Sbjct: 107497 gacaccaagcaggcaaaaga 107478

>emb|BX323846.2| Pig DNA sequence from clone XX-43B6, complete sequence
          Length = 80149

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   tctttatgattccctgcctt 465
             ||||||||||||||||||||
Sbjct: 78152 tctttatgattccctgcctt 78171



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   tctttatgattccctgcctt 465
             ||||||||||||||||||||
Sbjct: 61868 tctttatgattccctgcctt 61887



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   tctttatgattccctgcctt 465
             ||||||||||||||||||||
Sbjct: 60975 tctttatgattccctgcctt 60994

>gb|AC147085.3| Mus musculus BAC clone RP23-356J12 from 8, complete sequence
          Length = 209306

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   gacaccaagcaggcaaaaga 325
             ||||||||||||||||||||
Sbjct: 36141 gacaccaagcaggcaaaaga 36122

>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    caagcaggcaaaagaaagaa 330
              ||||||||||||||||||||
Sbjct: 444935 caagcaggcaaaagaaagaa 444916


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,354,647
Number of Sequences: 3902068
Number of extensions: 5354647
Number of successful extensions: 93197
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93110
Number of HSP's gapped (non-prelim): 87
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)