ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13f11 |
|---|---|
| Clone Library Name | barley_pub |
>FXL14_HUMAN (Q8N1E6) F-box/LRR-repeat protein 14 (F-box and leucine-rich repeat| protein 14) Length = 418 Score = 32.7 bits (73), Expect = 0.91 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Frame = -2 Query: 624 LTLKRCYSVDDSGLWALARYALNLRQLTISYC-QVTGLGLCHL--LSSLRCL-------- 478 LTL+ C + D L ++R LR L +S+C ++ GL HL + SLR L Sbjct: 207 LTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 266 Query: 477 QDVKMVHLSWVS--IEGFEMALRAACGRXXXXXXXXXXKSVLSPDLLQLLQACGCRI 313 D ++HL+ S + G +++ C + + + D L+ L C C I Sbjct: 267 SDTGIMHLAMGSLRLSGLDVSF---CDKVGDQSLAYIAQGL---DGLKSLSLCSCHI 317 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -2 Query: 627 NLTLKRCYSVDDSGLWALARYALNLRQLTISYCQVTG-LGLCHLLSSLRCLQDVKMVHLS 451 +L L+ C ++ D+G+ LA +L L L +S+C G L ++ L L+ + + Sbjct: 257 SLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH 316 Query: 450 WVSIEGFEMALRAACG 403 +S +G +R G Sbjct: 317 -ISDDGINRMVRQMHG 331
>FXL14_MOUSE (Q8BID8) F-box/LRR-repeat protein 14 (F-box and leucine-rich repeat| protein 14) Length = 400 Score = 32.7 bits (73), Expect = 0.91 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Frame = -2 Query: 624 LTLKRCYSVDDSGLWALARYALNLRQLTISYC-QVTGLGLCHL--LSSLRCL-------- 478 LTL+ C + D L ++R LR L +S+C ++ GL HL + SLR L Sbjct: 207 LTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 266 Query: 477 QDVKMVHLSWVS--IEGFEMALRAACGRXXXXXXXXXXKSVLSPDLLQLLQACGCRI 313 D ++HL+ S + G +++ C + + + D L+ L C C I Sbjct: 267 SDTGIMHLAMGSLRLSGLDVSF---CDKVGDQSLAYIAQGL---DGLKSLSLCSCHI 317 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -2 Query: 627 NLTLKRCYSVDDSGLWALARYALNLRQLTISYCQVTG-LGLCHLLSSLRCLQDVKMVHLS 451 +L L+ C ++ D+G+ LA +L L L +S+C G L ++ L L+ + + Sbjct: 257 SLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH 316 Query: 450 WVSIEGFEMALRAACG 403 +S +G +R G Sbjct: 317 -ISDDGINRMVRQMHG 331
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 32.7 bits (73), Expect = 0.91 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 627 NLTLKRCYSVDDSGLWALARYALNLRQLTISYCQ-VTGLGLCHLLSSLRCLQDVKMVHLS 451 +L + +C V D+GL LA NL++L++ C+ +TG GL + ++ LQ + + Sbjct: 406 SLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCE 465 Query: 450 WVSIEGFEMALR 415 VS+E R Sbjct: 466 -VSVEALRFVKR 476 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = -2 Query: 627 NLTLKRCYSVDDSGLWALARYALNLRQLTISYCQ-VTGLGLCHLLSSLRCLQDVKMVHLS 451 +L L+RC + D GL L Y ++++L++S C+ V+ GL + L+ + + H Sbjct: 302 HLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCG 361 Query: 450 WVSIEG 433 V+ G Sbjct: 362 RVTDVG 367
>DNAB_GUITH (O78411) Probable replicative DNA helicase (EC 3.6.1.-) [Contains:| Gth dnaB intein] Length = 599 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +1 Query: 331 LQKLEQVRG*HGLQTAEYLQLLQPPASGSQSHLEPFY 441 L L+Q+ G GL +YLQLLQ SQ H+E Y Sbjct: 297 LASLQQIYGDIGLIVIDYLQLLQYKEKSSQRHIELSY 333
>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)| Length = 545 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Frame = -1 Query: 316 HQMGQQASCLQGCHLI*EVPYCSSFR-QVCHRCVALLENSQ*LHASSMPSLRCGQDHVCL 140 HQ G+ S Q +L+ Y + + C +C EN Q H P CGQ CL Sbjct: 117 HQCGETLS--QTANLLVHKSYPTEAKPSECTKCGKAFENRQRSHTGQRPCKECGQACSCL 174 Query: 139 RCR 131 C+ Sbjct: 175 SCQ 177
>FXL13_HUMAN (Q8NEE6) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 735 Score = 32.0 bits (71), Expect = 1.6 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -2 Query: 624 LTLKRCYSVDDSGLWALARYALNLRQLTISYC 529 L++ CY + D G+ A + +L L L +SYC Sbjct: 559 LSVSECYRITDDGIQAFCKSSLILEHLDVSYC 590
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 31.2 bits (69), Expect = 2.6 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Frame = -2 Query: 624 LTLKRCYSVDDSGLWALARYALNLRQLTISYC-QVTGLGLCHLLSSLRCLQDVKMVHLSW 448 L + RC + D G LAR L ++ + C Q+T L L LQ + + H Sbjct: 278 LEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCEL 337 Query: 447 VSIEGFEMALRAACGRXXXXXXXXXXKSVLSPDLLQLLQAC 325 ++ +G AC +++ L+ L++C Sbjct: 338 ITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSC 378
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 31.2 bits (69), Expect = 2.6 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Frame = -2 Query: 624 LTLKRCYSVDDSGLWALARYALNLRQLTISYC-QVTGLGLCHLLSSLRCLQDVKMVHLSW 448 L + RC + D G LAR L ++ + C Q+T L L LQ + + H Sbjct: 278 LEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCEL 337 Query: 447 VSIEGFEMALRAACGRXXXXXXXXXXKSVLSPDLLQLLQAC 325 ++ +G AC +++ L+ L++C Sbjct: 338 ITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSC 378
>ATPG_OENOE (Q8KM29) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 303 Score = 30.4 bits (67), Expect = 4.5 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Frame = +1 Query: 76 KKKAXLYMTYIRQQLPCLLDISNRHDLDHTLGMAL---TRRVVIVNFLTGLRSDDKLAER 246 +K Y+ Y + ++ H L+H G ++ T+R V + + SD L Sbjct: 36 QKHTSGYLDYANHVEAIVAHLAAAHLLEHQNGSSIPFITQRPVKTTAILVITSDRGLVGG 95 Query: 247 MNNMVLLRSDGILVDKRL 300 NN VL R+D I+ +++L Sbjct: 96 YNNQVLKRTDQIMREQKL 113
>FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) (Spinal cord injury and regeneration-related protein 1) Length = 479 Score = 30.0 bits (66), Expect = 5.9 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Frame = -2 Query: 627 NLTLKRCYSVDDSGLWALARYALNLRQLTISYC-QVTGLGLCHLLSSLRCLQDVKMVHLS 451 +L+L C V D G+ +A LR L +S+C ++T + L ++ L L+++ + Sbjct: 324 SLSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCV 383 Query: 450 WVSIEGFE-----MALRAACGRXXXXXXXXXXKSVLSPDLLQLLQACGC 319 ++ G +LR+ R K +L+ L+LL GC Sbjct: 384 RITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLAMRSLRLLSLAGC 432
>RNPA_MYCMO (Q6KH14) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 112 Score = 30.0 bits (66), Expect = 5.9 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +1 Query: 67 SRPKKKA-XLYMTYIRQQLPCLLDISNRHDLDHTLGMALTRRVVIVNFLTGLRSDDKLAE 243 S PKK A + Y+++Q+ +LD ++L + + + + + + +NFL + K+ E Sbjct: 43 SIPKKFAIAVKRNYLKRQIKSILDQIRPYNLSYEMILIVRKNYLNLNFLQKQQEIKKIIE 102 Query: 244 RMNN 255 R++N Sbjct: 103 RISN 106
>Y4RD_RHISN (P55637) Putative integrase/recombinase y4rD| Length = 281 Score = 30.0 bits (66), Expect = 5.9 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = +1 Query: 73 PKKKAXLYMTY--IRQQLPCLLDISN----RHDLDHTLGMALTRRVVIVNFLTGLRSDDK 234 P K+A + +T+ + ++ L++ N R D T + L R V+ TG+ ++D Sbjct: 115 PIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGARVSEATGVNANDL 174 Query: 235 LAERMNNMVLLRSDGILVDKRLVDPSDAAAA 327 ER + VLLR G D+ + P D A A Sbjct: 175 QLERSHPQVLLRGKG-RRDRVIPIPQDLARA 204
>FXL16_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) Length = 479 Score = 29.6 bits (65), Expect = 7.7 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Frame = -2 Query: 624 LTLKRCYSVDDSGLWALARYALNLRQLTISYC-QVTGLGLCHLLSSLRCLQDVKMVHLSW 448 L+L C V D G+ +A LR L +S+C ++T + L ++ L L+++ + Sbjct: 325 LSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVR 384 Query: 447 VSIEGFE-----MALRAACGRXXXXXXXXXXKSVLSPDLLQLLQACGC 319 ++ G +LR+ R K +L+ L+LL GC Sbjct: 385 ITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLALGSLRLLSPAGC 432
>DTNA_MOUSE (Q9D2N4) Dystrobrevin alpha (Alpha-dystrobrevin)| Length = 746 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 91 LYMTYIRQQLPCLLDISNRHDLDHTL 168 LY+ +R PC+L+ SNR D +H L Sbjct: 408 LYVNMLRNDPPCMLESSNRLDEEHRL 433 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,273,858 Number of Sequences: 219361 Number of extensions: 1653572 Number of successful extensions: 3819 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3818 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
