>MCM3_MAIZE (Q43704) DNA replication licensing factor MCM3 homolog (Replication|
           origin activator) (ROA protein) (Fragment)
          Length = 600

 Score =  148 bits (373), Expect = 2e-35
 Identities = 78/125 (62%), Positives = 90/125 (72%)
 Frame = -3

Query: 638 REQRETEKXQXXXXXXXXXXXXXXXXXXXXXVHGSSGNDPMDVDGGSGNASNDQDVSSQR 459
           REQ+E E  Q                      HGSSGNDPMDVD GS    NDQ+VS++R
Sbjct: 487 REQKEMEMKQQAEHDAGATGGTVDG-------HGSSGNDPMDVDVGS----NDQNVSAER 535

Query: 458 MEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTRGQVEFILERMQDANRIMIRDG 279
           +EAFEA+LGQHVLANH+DQMSIDE+EQ VNR++   YTR QVEFILERMQDANR+MIRDG
Sbjct: 536 IEAFEALLGQHVLANHIDQMSIDEIEQMVNRESTAPYTRSQVEFILERMQDANRVMIRDG 595

Query: 278 IVRII 264
           +VRII
Sbjct: 596 VVRII 600

>MCM3_ARATH (Q9FL33) DNA replication licensing factor MCM3 homolog|
           (Minichromosome maintenance protein 3 homolog)
          Length = 776

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
 Frame = -3

Query: 524 DPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVA-- 351
           DPM+VD  S    +   VS+ R+E FE + GQH+  + +D +SI ++E  VN +   A  
Sbjct: 689 DPMEVDEPSVEQFSGT-VSAARIETFERVFGQHMRTHRLDDISIADIETVVNNNGVGASR 747

Query: 350 YTRGQVEFILERMQDANRIMIRDGIVRII 264
           Y+  ++  +LE++QD N++MI DG V II
Sbjct: 748 YSADEIMALLEKLQDDNKVMISDGKVHII 776

>MCM3_HUMAN (P25205) DNA replication licensing factor MCM3 (DNA polymerase|
           alpha holoenzyme-associated protein P1) (RLF beta
           subunit) (P102 protein) (P1-MCM3)
          Length = 808

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 46/86 (53%)
 Frame = -3

Query: 521 PMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTR 342
           P   D      S   ++S  R++AF+  L       H   + ++ + +++NRD+   ++ 
Sbjct: 723 PKTADSQETKESQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEEPFSS 782

Query: 341 GQVEFILERMQDANRIMIRDGIVRII 264
            +++  L +MQD N++M+ +GI+ +I
Sbjct: 783 VEIQAALSKMQDDNQVMVSEGIIFLI 808

>MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA polymerase|
           alpha holoenzyme-associated protein P1) (P1-MCM3)
          Length = 812

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 44/75 (58%)
 Frame = -3

Query: 488 SNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAVAYTRGQVEFILERMQ 309
           S   ++S  R++AF+A L +     H   + +  + +++NR+    ++  +++  L RMQ
Sbjct: 738 SQKVELSEPRLKAFKAALLEVFQEAHEQSVGMLHLTESINRNREEPFSSEEIQACLSRMQ 797

Query: 308 DANRIMIRDGIVRII 264
           D N++M+ +GIV +I
Sbjct: 798 DDNQVMVSEGIVFLI 812

>SYFA_DEIRA (Q9RRX8) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 339

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 330 VHPGEDARCKQDNDSGWHCPHHLIATWFDIGQADCGMLCPDLFSGLSELREVSWK 166
           V PG D     +N  G        + W ++G   CGM+ P++F  + +LRE + K
Sbjct: 246 VEPGADFAVYWENPRGE-------SKWLELG--GCGMVHPNVFKAVDDLREAAGK 291

>LEU2_PSEF5 (Q4KF08) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 472

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 25/105 (23%), Positives = 44/105 (41%)
 Frame = -3

Query: 533 SGNDPMDVDGGSGNASNDQDVSSQRMEAFEAILGQHVLANHVDQMSIDEVEQTVNRDAAV 354
           +G  P  +D       ++   + +R    EAI      A+ V ++ +  ++   +     
Sbjct: 48  AGRKPWRIDANIATPDHNVPTTPERKGGIEAI------ADQVSRLQVQTLDDNCDE---- 97

Query: 353 AYTRGQVEFILERMQDANRIMIRDGIVRII*SQHGSTLDKLIVAC 219
               G VEF   +M D     +R GIV +I  + G+TL  + V C
Sbjct: 98  ---YGIVEF---KMND-----VRQGIVHVIGPEQGATLPGMTVVC 131

>PIR_ARATH (Q5S2C3) Protein PIR (PIR of plants) (Protein PIROGI) (Protein|
            KLUNKER) (AtSRA1)
          Length = 1283

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
 Frame = -3

Query: 389  EVEQTVNRDAAVAYTRGQVEFILERMQDANRIM--------IRDGIVRII*SQHGST--L 240
            EV + +    +V YT G ++ +L    D  R M        I     +I+ +Q G +  +
Sbjct: 999  EVLRGIKEIGSVIYTMGLLDIVLVSPVDTKRFMQTAPWLGLIPGAEGQIVNAQDGESPLV 1058

Query: 239  DKLIVACFVLICSPGCLNSVRF 174
            + L  A   ++ SPGCLN   F
Sbjct: 1059 NLLKSATSAVVSSPGCLNPAAF 1080


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,750,727
Number of Sequences: 219361
Number of extensions: 1649404
Number of successful extensions: 4559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4556
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)