ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12p20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 563 bits (284), Expect = e-157 Identities = 386/417 (92%), Gaps = 14/417 (3%) Strand = Plus / Minus Query: 82 ttcagatcaggcgaggaaggttacctttcgattcgcaaaaatggcaatcctactct---- 137 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1801 ttcagatcaggcgaggaaggttaccgttcgattcgcaaaaatggcaatcctactcttact 1742 Query: 138 --agacctttttcactttcaattgatctcaaccaaaattctactgcttggcctgaactga 195 |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct: 1741 ctagaccttt--cactttcagttgatctcaaccgaaattctactgcttggcctgaactga 1684 Query: 196 agcatctaaaaaacacggacgaggcctgaagag--ctttacag---gctcgatcagacgg 250 |||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||| Sbjct: 1683 ggcatctaaaaaa-acggaggaggcctgaagagagctttacatacagctcgatcagacgg 1625 Query: 251 agagctgcccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacga 310 |||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||| Sbjct: 1624 agagctgcccctccgctggctcggcgaccttgggcttgggcttgggcttctcgacgacga 1565 Query: 311 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 1505 Query: 371 tcaccttggcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcg 430 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 1504 tcaccttggcggggtcgatgacgcccgactcgatcaggttctcgtacttgtcggtcattg 1445 Query: 431 cgttgtaacccatctcccactcnctatccttgatcttctcnatcacaacttcccctt 487 |||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct: 1444 cgttgtaacccatctcccactcgctctccttgatcttctcgatcacaacctcccctt 1388
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296520 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 10296519 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296460 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 10296459 gatcttctcaactaccacttcccctt 10296434
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1666 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 1665 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1606 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 1605 gatcttctcaactaccacttcccctt 1580
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 735 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 734 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 675 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 674 gatcttctcaactaccacttcccctt 649
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1664 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 1663 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1604 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 1603 gatcttctcaactaccacttcccctt 1578
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 683 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 682 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 623 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 622 gatcttctcaactaccacttcccctt 597
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296402 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 10296401 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296342 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 10296341 gatcttctcaactaccacttcccctt 10296316
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 151 bits (76), Expect = 3e-33 Identities = 173/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 59439 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 59438 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 59379 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 59378 gatcttctcaactaccacttcccctt 59353
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 145 bits (73), Expect = 2e-31 Identities = 177/212 (83%) Strand = Plus / Minus Query: 259 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 318 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753 Query: 319 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 378 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693 Query: 379 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 438 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 1692 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 1633 Query: 439 cccatctcccactcnctatccttgatcttctc 470 |||| |||||| || || |||||||||||||| Sbjct: 1632 cccacctcccaatcgctctccttgatcttctc 1601
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 143 bits (72), Expect = 6e-31 Identities = 172/206 (83%) Strand = Plus / Minus Query: 282 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 341 |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253 Query: 342 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 401 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1193 Query: 402 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcnctatcctt 461 |||| |||||| |||||||| ||||||| ||||| || | |||||||| | ||||| Sbjct: 1192 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1133 Query: 462 gatcttctcnatcacaacttcccctt 487 ||||||||| | || |||||||||| Sbjct: 1132 gatcttctcaactaccacttcccctt 1107
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 131 bits (66), Expect = 2e-27 Identities = 177/213 (83%), Gaps = 1/213 (0%) Strand = Plus / Minus Query: 259 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 318 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012 Query: 319 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 378 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952 Query: 379 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 438 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 951 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 892 Query: 439 cccatctcccactcnctat-ccttgatcttctc 470 |||| |||||| || || | ||||||||||||| Sbjct: 891 cccacctcccaatcgctctgccttgatcttctc 859
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 99.6 bits (50), Expect = 8e-18 Identities = 134/162 (82%) Strand = Plus / Minus Query: 291 cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggc 350 |||||||||||| || ||||| ||||| || || || |||||||| | ||| ||||| || Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790 Query: 351 gttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggtt 410 |||||| || ||||| || ||||| ||||| |||||||| ||||| | ||| | |||||| Sbjct: 1789 gttctgcagggcgcacctagtcactttggcagggtcgatcacaccagcctccaccaggtt 1730 Query: 411 ctcgtacttgtctgtcatcgcgttgtaacccatctcccactc 452 ||||| |||||| | ||| ||||||||||| | ||||||||| Sbjct: 1729 ctcgtgcttgtccgccatggcgttgtaaccgaactcccactc 1688
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Minus Query: 295 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 354 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718 Query: 355 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 414 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 1717 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 1658 Query: 415 tacttgtctgtcatcgcgttgtaacccatctcccactcnctatccttgatctt 467 | |||| | |||||| ||||| || | |||||| || || ||||||||||| Sbjct: 1657 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatctt 1605
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 67.9 bits (34), Expect = 3e-08 Identities = 133/166 (80%) Strand = Plus / Minus Query: 284 ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccg 343 |||| ||||| ||||||||||| || || ||||| ||||| || |||||||| || || | Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcctgaaactg 1736 Query: 344 aggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcga 403 | || | ||||| | || ||||| ||||||||||| || |||||||| || | || | Sbjct: 1735 atgctgaattctgcaaggcacatcttgtcaccttggctggatcgatgactccagcttcca 1676 Query: 404 tcaggttctcgtacttgtctgtcatcgcgttgtaacccatctccca 449 || |||||||| | ||||||||||||||| |||||||||||||| Sbjct: 1675 cgagattctcgtattggtctgtcatcgcgttataacccatctccca 1630
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 295 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 354 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792 Query: 355 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 414 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 35977793 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 35977852 Query: 415 tacttgtctgtcatcgcgttgtaacccatctcccactcnctatccttgatctt 467 | |||| | |||||| ||||| || | |||||| || || ||||||||||| Sbjct: 35977853 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatctt 35977905
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 295 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 354 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303 Query: 355 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 414 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 39304 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 39363 Query: 415 tacttgtctgtcatcgcgttgtaacccatctcccactcnctatccttgatctt 467 | |||| | |||||| ||||| || | |||||| || || ||||||||||| Sbjct: 39364 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatctt 39416
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Minus Query: 295 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 354 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827 Query: 355 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 414 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 826 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 767 Query: 415 tacttgtctgtcatcgcgttgtaacccatctcccactcnctatccttgatctt 467 | |||| | |||||| ||||| || | |||||| || || ||||||||||| Sbjct: 766 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatctt 714
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 295 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 354 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866 Query: 355 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 414 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 36067867 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 36067926 Query: 415 tacttgtctgtcatcgcgttgtaacccatctcccactcnctatccttgatctt 467 | |||| | |||||| ||||| || | |||||| || || ||||||||||| Sbjct: 36067927 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatctt 36067979
>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene Length = 2192 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 346 gcggcgttctggagcgcgcatctcgtcaccttggcggggtcga 388 |||||||||||||||||| | | |||||||||||| ||||||| Sbjct: 1992 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1950
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 346 gcggcgttctggagcgcgcatctcgtcaccttggcggggtcga 388 |||||||||||||||||| | | |||||||||||| ||||||| Sbjct: 1614 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1572
>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds Length = 313 Score = 48.1 bits (24), Expect = 0.027 Identities = 51/60 (85%) Strand = Plus / Minus Query: 285 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 344 |||||||||||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 372 caccttggcggggtcgatgacacccgact 400 |||||| || ||||||||||||||||||| Sbjct: 423825 caccttcgccgggtcgatgacacccgact 423853
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 ggcggcgttctggagcgcgca 365 ||||||||||||||||||||| Sbjct: 752794 ggcggcgttctggagcgcgca 752774
>gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative AraC/XylS family transcription factor gene, complete cds Length = 984 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 ggcggcgttctggagcgcgca 365 ||||||||||||||||||||| Sbjct: 69 ggcggcgttctggagcgcgca 89
>ref|XM_721409.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05940) partial mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gtatttttatttaaaaaatga 51 ||||||||||||||||||||| Sbjct: 1095 gtatttttatttaaaaaatga 1115
>ref|XM_675045.1| Plasmodium berghei strain ANKA Pb-fam-4 protein (PB000584.01.0) partial mRNA Length = 2739 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gtatttttatttaaaaaatga 51 ||||||||||||||||||||| Sbjct: 1086 gtatttttatttaaaaaatga 1106
>ref|XM_776592.1| PREDICTED: Strongylocentrotus purpuratus similar to leucine rich repeat neuronal 6C (LOC576268), mRNA Length = 1521 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ctgaagatttctttgatccac 74 ||||||||||||||||||||| Sbjct: 407 ctgaagatttctttgatccac 427
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gtatttttatttaaaaaatga 51 ||||||||||||||||||||| Sbjct: 884045 gtatttttatttaaaaaatga 884025
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gtatttttatttaaaaaatga 51 ||||||||||||||||||||| Sbjct: 904483 gtatttttatttaaaaaatga 904463
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 ggcggcgttctggagcgcgca 365 ||||||||||||||||||||| Sbjct: 2073040 ggcggcgttctggagcgcgca 2073020
>emb|AL034556.4|PFMAL3P5 Plasmodium falciparum MAL3P5, complete sequence Length = 86826 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gtatttttatttaaaaaatga 51 ||||||||||||||||||||| Sbjct: 80356 gtatttttatttaaaaaatga 80376
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 acctttttcactttcaattga 160 ||||||||||||||||||||| Sbjct: 146204 acctttttcactttcaattga 146184
>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete sequence Length = 159755 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tatttttatttaaaaaatgac 52 ||||||||||||||||||||| Sbjct: 102598 tatttttatttaaaaaatgac 102618
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 ggcggcgttctggagcgcgca 365 ||||||||||||||||||||| Sbjct: 1647447 ggcggcgttctggagcgcgca 1647427
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 289 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccgg 337 ||||||||||| ||||||||||| || || ||||| | |||||| |||| Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccgg 1703
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 caccgaggcggcgttctggagcgcg 363 |||||| |||||||||||||||||| Sbjct: 2700886 caccgacgcggcgttctggagcgcg 2700910
>emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chromosome 13, complete sequence Length = 230723 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 tatttttatttaaaaaatgac 52 ||||||||||||||||||||| Sbjct: 4875 tatttttatttaaaaaatgac 4855
>dbj|AB039274.1| Propionibacterium granulosum hsp60 gene for 60 kDa heat shock protein, partial cds Length = 1688 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 343 gaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatga 391 |||| ||||||||| || ||| | | |||||||||||| |||||||||| Sbjct: 1606 gaggaggcgttctgcagggcggaacgcgtcaccttggccgggtcgatga 1558
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atttttatttaaaaaatgac 52 |||||||||||||||||||| Sbjct: 2080997 atttttatttaaaaaatgac 2081016
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence Length = 188132 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cctgaactgaagcatctaaa 205 |||||||||||||||||||| Sbjct: 123998 cctgaactgaagcatctaaa 124017
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tatttttatttaaaaaatga 51 |||||||||||||||||||| Sbjct: 179355 tatttttatttaaaaaatga 179374
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 caccgaggcggcgttctgga 358 |||||||||||||||||||| Sbjct: 344526 caccgaggcggcgttctgga 344545
>gb|AC117395.5| Homo sapiens 3 BAC RP11-651P23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172715 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atttttatttaaaaaatgac 52 |||||||||||||||||||| Sbjct: 96337 atttttatttaaaaaatgac 96356
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggcttgggcttctcgacga 307 |||||||||||||||||||| Sbjct: 2275572 cggcttgggcttctcgacga 2275553
>emb|BX649634.8| Zebrafish DNA sequence from clone CH211-284G18 in linkage group 2, complete sequence Length = 154030 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gtatttttatttaaaaaatg 50 |||||||||||||||||||| Sbjct: 89401 gtatttttatttaaaaaatg 89382
>dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308 Length = 51359 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 agatttctttgatccacaag 77 |||||||||||||||||||| Sbjct: 11296 agatttctttgatccacaag 11315
>gb|AC079951.35| Homo sapiens 12q BAC RP11-346L11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191942 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ggtatttttatttaaaaaat 49 |||||||||||||||||||| Sbjct: 170493 ggtatttttatttaaaaaat 170474
>gb|AC074375.7| Homo sapiens BAC clone RP11-729M8 from 2, complete sequence Length = 106896 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tatttttatttaaaaaatga 51 |||||||||||||||||||| Sbjct: 71337 tatttttatttaaaaaatga 71356
>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131209 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 gtatttttatttaaaaaatg 50 |||||||||||||||||||| Sbjct: 81989 gtatttttatttaaaaaatg 82008
>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence Length = 151783 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ttagccttcggcttgggctt 299 |||||||||||||||||||| Sbjct: 147389 ttagccttcggcttgggctt 147408
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 caccttggcggggtcgatga 391 |||||||||||||||||||| Sbjct: 8267338 caccttggcggggtcgatga 8267319
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 accttggcggggtcgatgacaccc 396 |||||| ||||||||||||||||| Sbjct: 639066 accttgacggggtcgatgacaccc 639043
>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence Length = 226237 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gaactgaagcatctaaaaaa 208 |||||||||||||||||||| Sbjct: 206536 gaactgaagcatctaaaaaa 206517
>gb|AF062920.1|AF062920 Thermus aquaticus DNA polymerase III (dnaE) gene, complete cds Length = 4526 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 343 gaggcggcgttctggagcgcgcatctcgtcaccttggcggggtc 386 |||||||||||||| || ||| | | ||||||||||||||||| Sbjct: 4104 gaggcggcgttctgcagggcggagcgggtcaccttggcggggtc 4147
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggcttgggcttctcgacga 307 |||||||||||||||||||| Sbjct: 2297918 cggcttgggcttctcgacga 2297899
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gcggcgttctggagcgcgca 365 |||||||||||||||||||| Sbjct: 995302 gcggcgttctggagcgcgca 995321
>dbj|AK112971.1| Ciona intestinalis cDNA, clone:cicl030b08, full insert sequence Length = 1163 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tttttatttaaaaaatgacg 53 |||||||||||||||||||| Sbjct: 12 tttttatttaaaaaatgacg 31
>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence Length = 182245 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gaactgaagcatctaaaaaa 208 |||||||||||||||||||| Sbjct: 115349 gaactgaagcatctaaaaaa 115330
>gb|L27472.1|CRECPN1B Chlamydomonas reinhardtii chaperonin alpha-like subunit, complete cds Length = 2420 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gtcaccttggcggggtcgat 389 |||||||||||||||||||| Sbjct: 1609 gtcaccttggcggggtcgat 1590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,384,850 Number of Sequences: 3902068 Number of extensions: 4384850 Number of successful extensions: 107141 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106565 Number of HSP's gapped (non-prelim): 568 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
