ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12p19 |
|---|---|
| Clone Library Name | barley_pub |
>S12A1_RAT (P55016) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1095 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/30 (40%), Positives = 25/30 (83%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1066 YMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1095
>S12A1_RABIT (P55015) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/30 (40%), Positives = 25/30 (83%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1070 YMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1099
>S12A1_MOUSE (P55014) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (BSC1) (Kidney-specific Na-K-Cl symporter) Length = 1095 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/30 (40%), Positives = 25/30 (83%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1066 YMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1095
>S12A1_HUMAN (Q13621) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/30 (40%), Positives = 25/30 (83%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1070 YMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1099
>S12A4_RAT (Q63632) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (rKCC1) (Furosemide-sensitive K-Cl cotransporter) Length = 1085 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A4_RABIT (Q28677) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (rbKCC1) Length = 1085 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A4_MOUSE (Q9JIS8) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (mKCC1) Length = 1085 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A4_HUMAN (Q9UP95) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (hKCC1) Length = 1085 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A5_HUMAN (Q9H2X9) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (Erythroid K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (hKCC2) Length = 1116 Score = 34.7 bits (78), Expect = 0.23 Identities = 12/30 (40%), Positives = 25/30 (83%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E++ R+++VRG R+V+T ++ Sbjct: 1087 YMEFLEVLTEHLDRVMLVRGGGREVITIYS 1116
>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 34.7 bits (78), Expect = 0.23 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1054 YMEFLEVLTEGLNRVLLVRGGGREVITIYS 1083
>S12A7_HUMAN (Q9Y666) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 34.7 bits (78), Expect = 0.23 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1054 YMEFLEVLTEGLNRVLLVRGGGREVITIYS 1083
>S12A5_MOUSE (Q91V14) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (mKCC2) Length = 1115 Score = 34.3 bits (77), Expect = 0.29 Identities = 12/30 (40%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+++VRG R+V+T ++ Sbjct: 1086 YMEFLEVLTEQLDRVMLVRGGGREVITIYS 1115
>S12A5_RAT (Q63633) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (Furosemide-sensitive K-Cl cotransporter) (rKCC2) Length = 1116 Score = 34.3 bits (77), Expect = 0.29 Identities = 12/30 (40%), Positives = 24/30 (80%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+++VRG R+V+T ++ Sbjct: 1087 YMEFLEVLTEQLDRVMLVRGGGREVITIYS 1116
>YRD3_CAEEL (Q09573) Hypothetical protein K02A2.3| Length = 1020 Score = 34.3 bits (77), Expect = 0.29 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVT 441 YM Y+D+L E++PR+L + G R+V+T Sbjct: 991 YMTYLDVLTEDLPRVLFIGGSGREVIT 1017
>S12A6_MOUSE (Q924N4) Solute carrier family 12 member 6 (Electroneutral| potassium-chloride cotransporter 3) (K-Cl cotransporter 3) Length = 1150 Score = 32.7 bits (73), Expect = 0.86 Identities = 12/30 (40%), Positives = 23/30 (76%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG +V+T ++ Sbjct: 1121 YMEFLEVLTEGLERVLLVRGGGSEVITIYS 1150
>S12A6_HUMAN (Q9UHW9) Solute carrier family 12 member 6 (Electroneutral| potassium-chloride cotransporter 3) (K-Cl cotransporter 3) Length = 1150 Score = 32.7 bits (73), Expect = 0.86 Identities = 12/30 (40%), Positives = 23/30 (76%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YME++++L E + R+L+VRG +V+T ++ Sbjct: 1121 YMEFLEVLTEGLERVLLVRGGGSEVITIYS 1150
>S12A2_HUMAN (P55011) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (Basolateral Na-K-Cl symporter) Length = 1212 Score = 30.4 bits (67), Expect = 4.2 Identities = 11/30 (36%), Positives = 23/30 (76%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM +++ L +++P +L+VRG + V+TF++ Sbjct: 1183 YMAWLEALSKDLPPILLVRGNHQSVLTFYS 1212
>RL11_MYCPE (Q8EX25) 50S ribosomal protein L11| Length = 155 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +2 Query: 53 TYSIGIAPSNNLLQSLSRIQITENSKNRDTVATVSVGKKMEVSRIDL 193 T+ I P LL+ + I++ + +TVAT+S K +E+++ L Sbjct: 69 TFEIKTTPVTMLLKKAANIKVGAKNSKTETVATISREKALEIAKTKL 115
>S12A2_MOUSE (P55012) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (Basolateral Na-K-Cl symporter) Length = 1205 Score = 30.4 bits (67), Expect = 4.2 Identities = 11/30 (36%), Positives = 23/30 (76%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM +++ L +++P +L+VRG + V+TF++ Sbjct: 1176 YMAWLEALSKDLPPVLLVRGNHQSVLTFYS 1205
>NKCL_MANSE (Q25479) Bumetanide-sensitive sodium-(potassium)-chloride| cotransporter (Na-K-CL symporter) Length = 1060 Score = 30.4 bits (67), Expect = 4.2 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM +++++ ++P ML VRG V+TF++ Sbjct: 1031 YMAWLEMMSRDLPPMLFVRGNHTSVLTFYS 1060
>YJGX_ECOLI (P39349) Hypothetical UPF0141 protein yjgX precursor| Length = 371 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Frame = +1 Query: 355 SAHICVFILLQW------HNNWMELRLYVFDQVKNVTTSLLYPLTINMRGTFSTSRSM 510 SA I VF+++ W H NW+ LRL+V V ++ + GT T R M Sbjct: 14 SAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVV---GTTDTLREM 68
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 30.0 bits (66), Expect = 5.6 Identities = 11/30 (36%), Positives = 23/30 (76%) Frame = -1 Query: 521 YMEYMDLLVENVPRMLIVRGYRRDVVTFFT 432 YM +++ L +++P +L+VRG + V+TF++ Sbjct: 1162 YMAWIETLSKDLPPILLVRGNHQSVLTFYS 1191
>ACO1_AJECA (Q12618) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA| desaturase) (Fatty acid desaturase) (Delta(9)-desaturase) Length = 476 Score = 29.6 bits (65), Expect = 7.2 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -1 Query: 401 QLLCHCSRMNTQMCADSTAEVGSPHLDGYLRWDALGCHCHIRYVN 267 +L HCS T A VG ++G +RW A G H RY + Sbjct: 102 RLWAHCSYSATLPLKIYLAAVGGGAVEGSIRWWARGHRAHHRYTD 146
>TSP2_CHICK (P35440) Thrombospondin-2 precursor| Length = 1178 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/82 (26%), Positives = 33/82 (40%) Frame = +3 Query: 285 AVTTQCIPSKVAVKVRASNFSSGICTHLCIHSATMAQQLDGAQTVRI*SSKKCDNISSVS 464 AVTT+ + K K C C TM +L G +RI + DN+ VS Sbjct: 255 AVTTEYVGEKTEKKAE-------FCDRSCEELGTMFTELTG---LRIVVNNLADNLQKVS 304 Query: 465 PNYQHAWDVLYKQVHVLHVEVC 530 Q W+++ + + VC Sbjct: 305 EENQIMWELIGPNKTLKNQSVC 326 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,009,235 Number of Sequences: 219361 Number of extensions: 1618739 Number of successful extensions: 3644 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3643 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
