ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13e20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 363 bits (183), Expect = 5e-97 Identities = 263/286 (91%), Gaps = 14/286 (4%) Strand = Plus / Minus Query: 365 ttcgattcgcaaaaatggcaatcctactct------agacctttttcactttcaattgat 418 |||||||||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 1775 ttcgattcgcaaaaatggcaatcctactcttactctagaccttt--cactttcagttgat 1718 Query: 419 ctcaaccaaaattctactgcttggcctgaactgaagcatctaaaaaacacggacgaggcc 478 ||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct: 1717 ctcaaccgaaattctactgcttggcctgaactgaggcatctaaaaaa-acggaggaggcc 1659 Query: 479 tgaagag--ctttacag---gctcgatcagacggagagctgcccctccgctggctccgcg 533 ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct: 1658 tgaagagagctttacatacagctcgatcagacggagagctgcccctccgctggctcggcg 1599 Query: 534 accttagccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccg 593 ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 accttgggcttgggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccg 1539 Query: 594 gacaccgaggcggcgttctggagcgcgcatctcgtcaccttggcgg 639 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1538 gacaccgaggcggcgttctggagcgcgcatctcgtcaccttggcgg 1493
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcacctt 10296544
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcacctt 1690
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcacctt 759
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcacctt 1688
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcacctt 707
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcacctt 10296426
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 103 bits (52), Expect = 7e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcacctt 59463
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 539 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 598 |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253 Query: 599 cgaggcggcgttctggagcgcgcatctcgtcacctt 634 ||||||||| |||||||||||||||||||||||||| Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcacctt 1217
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 516 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 575 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753 Query: 576 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 635 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693 Query: 636 gc 637 || Sbjct: 1692 gc 1691
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 67.9 bits (34), Expect = 4e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 516 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 575 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012 Query: 576 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 635 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952 Query: 636 gc 637 || Sbjct: 951 gc 950
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 552 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 611 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718 Query: 612 tggagcgcgcatctcgtcacctt 634 || | ||| ||||| |||||||| Sbjct: 1717 tgcaacgcacatcttgtcacctt 1695
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 552 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 611 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792 Query: 612 tggagcgcgcatctcgtcacctt 634 || | ||| ||||| |||||||| Sbjct: 35977793 tgcaacgcacatcttgtcacctt 35977815
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 552 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 611 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303 Query: 612 tggagcgcgcatctcgtcacctt 634 || | ||| ||||| |||||||| Sbjct: 39304 tgcaacgcacatcttgtcacctt 39326
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 552 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 611 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827 Query: 612 tggagcgcgcatctcgtcacctt 634 || | ||| ||||| |||||||| Sbjct: 826 tgcaacgcacatcttgtcacctt 804
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 552 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 611 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866 Query: 612 tggagcgcgcatctcgtcacctt 634 || | ||| ||||| |||||||| Sbjct: 36067867 tgcaacgcacatcttgtcacctt 36067889
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 548 cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggc 607 |||||||||||| || ||||| ||||| || || || |||||||| | ||| ||||| || Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790 Query: 608 gttctggagcgcgcatctcgtcaccttggc 637 |||||| || ||||| || ||||| ||||| Sbjct: 1789 gttctgcagggcgcacctagtcactttggc 1760
>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds Length = 313 Score = 48.1 bits (24), Expect = 0.036 Identities = 51/60 (85%) Strand = Plus / Minus Query: 542 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 601 |||||||||||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42
>gb|AC137753.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084M23, complete sequence Length = 134180 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 243 ggcgcgccgccaccggcgaggaggcgg 269 ||||||||||| ||||||||||||||| Sbjct: 128518 ggcgcgccgccgccggcgaggaggcgg 128492
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 243 ggcgcgccgccaccggcgaggaggcgg 269 ||||||||||| ||||||||||||||| Sbjct: 65281 ggcgcgccgccgccggcgaggaggcgg 65255
>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene Length = 2192 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 603 gcggcgttctggagcgcgcatctcgtcaccttggc 637 |||||||||||||||||| | | |||||||||||| Sbjct: 1992 gcggcgttctggagcgcggaacgcgtcaccttggc 1958
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 243 ggcgcgccgccaccggcgaggaggcgg 269 ||||||||||| ||||||||||||||| Sbjct: 20173193 ggcgcgccgccgccggcgaggaggcgg 20173167
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 603 gcggcgttctggagcgcgcatctcgtcaccttggc 637 |||||||||||||||||| | | |||||||||||| Sbjct: 1614 gcggcgttctggagcgcggaacgcgtcaccttggc 1580
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 229 ggaggacacgtgcaggcgcgcc 250 |||||||||||||||||||||| Sbjct: 4513317 ggaggacacgtgcaggcgcgcc 4513338
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ggcggcgttctggagcgcgca 622 ||||||||||||||||||||| Sbjct: 752794 ggcggcgttctggagcgcgca 752774
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 cgccgccaccggcgaggaggc 267 ||||||||||||||||||||| Sbjct: 2652623 cgccgccaccggcgaggaggc 2652643
>gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative AraC/XylS family transcription factor gene, complete cds Length = 984 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 602 ggcggcgttctggagcgcgca 622 ||||||||||||||||||||| Sbjct: 69 ggcggcgttctggagcgcgca 89
>emb|Z82075.1|CEW07A8 Caenorhabditis elegans Cosmid W07A8, complete sequence Length = 22491 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 aaaacataaacacaaatttat 75 ||||||||||||||||||||| Sbjct: 935 aaaacataaacacaaatttat 955
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ggcggcgttctggagcgcgca 622 ||||||||||||||||||||| Sbjct: 2073040 ggcggcgttctggagcgcgca 2073020
>gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, complete sequence Length = 188887 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 taattaatagtacaactttgg 42 ||||||||||||||||||||| Sbjct: 86660 taattaatagtacaactttgg 86680 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 aattaatagtacaactttgg 107 |||||||||||||||||||| Sbjct: 86661 aattaatagtacaactttgg 86680
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 acctttttcactttcaattga 417 ||||||||||||||||||||| Sbjct: 146204 acctttttcactttcaattga 146184
>gb|AC092331.2| Homo sapiens chromosome 5 clone RP11-163B12, complete sequence Length = 162153 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 taattaatagtacaactttgg 42 ||||||||||||||||||||| Sbjct: 110287 taattaatagtacaactttgg 110267 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 aattaatagtacaactttgg 107 |||||||||||||||||||| Sbjct: 110286 aattaatagtacaactttgg 110267
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ggcggcgttctggagcgcgca 622 ||||||||||||||||||||| Sbjct: 1647447 ggcggcgttctggagcgcgca 1647427
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 546 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccgg 594 ||||||||||| ||||||||||| || || ||||| | |||||| |||| Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccgg 1703
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 596 caccgaggcggcgttctggagcgcg 620 |||||| |||||||||||||||||| Sbjct: 2700886 caccgacgcggcgttctggagcgcg 2700910
>gb|AC140070.3| Mus musculus BAC clone RP24-161L16 from 9, complete sequence Length = 168604 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 aaacataaacacaaatttata 76 ||||||||||||||||||||| Sbjct: 130434 aaacataaacacaaatttata 130414
>ref|NM_111101.3| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding AT3G02340 mRNA, complete cds Length = 1440 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acacagcaatggcgtcgacg 226 |||||||||||||||||||| Sbjct: 22 acacagcaatggcgtcgacg 41
>ref|XM_642042.1| Dictyostelium discoideum hypothetical protein (DDB0202081), partial mRNA Length = 3117 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttaattaatagtacaacttt 40 |||||||||||||||||||| Sbjct: 1762 ttaattaatagtacaacttt 1781
>ref|XM_629777.1| Dictyostelium discoideum hypothetical protein (DDB0184174), partial mRNA Length = 4563 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 aacaacaccatcaattaata 95 |||||||||||||||||||| Sbjct: 3828 aacaacaccatcaattaata 3847
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 40.1 bits (20), Expect = 8.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 541 ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattcc 592 |||| ||||| ||||||||||| || || ||||| ||||| || |||||||| Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcc 1744
>gb|BC060338.1| Xenopus laevis hypothetical protein LOC398774, mRNA (cDNA clone IMAGE:4173253), partial cds Length = 2169 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aaacataaacacaaatttat 75 |||||||||||||||||||| Sbjct: 2139 aaacataaacacaaatttat 2120
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence Length = 188132 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cctgaactgaagcatctaaa 462 |||||||||||||||||||| Sbjct: 123998 cctgaactgaagcatctaaa 124017
>gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, complete sequence Length = 151295 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 caacagagaaacaaatcaga 130 |||||||||||||||||||| Sbjct: 119628 caacagagaaacaaatcaga 119609
>emb|AL590635.7| Human DNA sequence from clone RP11-40G16 on chromosome 6 Contains a ras homologue gene family pseudogene, complete sequence Length = 96014 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cacagcttcaaaacataaac 65 |||||||||||||||||||| Sbjct: 92653 cacagcttcaaaacataaac 92672
>emb|AL513205.8| Human DNA sequence from clone RP11-432E18 on chromosome 1 Contains the OR6K1P olfactory receptor, family 6, subfamily K, member 1 pseudogene, the OR6K2 gene for olfactory receptor, family 6, subfamily K, member 2, the OR6K3 gene for olfactory receptor, family 6, subfamily K, member 3, the OR6K4P olfactory receptor, family 6, subfamily K, member 4 pseudogene, the OR6K5P olfactory receptor, family 6, subfamily K, member 5 pseudogene, the OR6K6 gene for olfactory receptor, family 6, subfamily K, member 6, the OR6N1 gene for olfactory receptor, family 6, subfamily N, member 1, the OR6N2 gene for olfactory receptor, family 6, subfamily N, member 2, the OR2AQ1P olfactory receptor, family 2, subfamily AQ, member 1 pseudogene, the OR10AA1P olfactory receptor, family 10, subfamily AA, member 1 pseudogene and the MNDA gene for myeloid cell nuclear differentiation antigen, complete sequence Length = 180999 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 cttcaaaacataaacacaaa 70 |||||||||||||||||||| Sbjct: 159544 cttcaaaacataaacacaaa 159563
>emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chromosome 13 Contains a novel pseudogene and a keratin 18 (KRT18) (K18, CYK18) pseudogene, complete sequence Length = 156442 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gcttcaaaacataaacacaa 69 |||||||||||||||||||| Sbjct: 40014 gcttcaaaacataaacacaa 39995
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 caccgaggcggcgttctgga 615 |||||||||||||||||||| Sbjct: 344526 caccgaggcggcgttctgga 344545
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 cggcttgggcttctcgacga 564 |||||||||||||||||||| Sbjct: 2275572 cggcttgggcttctcgacga 2275553
>tpg|BK003221.1| TPA: TPA_inf: Drosophila melanogaster HDC19801 (HDC19801) gene, complete cds Length = 1516 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 aaggccttcttctttcgattcgca 375 ||||||||||||||| |||||||| Sbjct: 184 aaggccttcttctttggattcgca 207
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cgccgccaccggcgaggagg 266 |||||||||||||||||||| Sbjct: 134067 cgccgccaccggcgaggagg 134086
>gb|BC097629.1| Xenopus laevis hypothetical protein LOC398774, mRNA (cDNA clone MGC:114883 IMAGE:5512133), complete cds Length = 2154 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aaacataaacacaaatttat 75 |||||||||||||||||||| Sbjct: 2133 aaacataaacacaaatttat 2114
>gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, region 18F-18F, BAC clone BACR48P17, complete sequence Length = 176195 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 aaggccttcttctttcgattcgca 375 ||||||||||||||| |||||||| Sbjct: 107439 aaggccttcttctttggattcgca 107462
>gb|AC079790.6| Homo sapiens BAC clone RP11-484E6 from 2, complete sequence Length = 161723 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 ttcaaaacataaacacaaatttataaca 79 |||| |||||| |||||||||||||||| Sbjct: 124453 ttcataacatacacacaaatttataaca 124426
>gb|AC068900.3|AC068900 Arabidopsis thaliana chromosome 3 BAC F11A12 genomic sequence, complete sequence Length = 22087 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acacagcaatggcgtcgacg 226 |||||||||||||||||||| Sbjct: 7555 acacagcaatggcgtcgacg 7574
>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence Length = 151783 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 ttagccttcggcttgggctt 556 |||||||||||||||||||| Sbjct: 147389 ttagccttcggcttgggctt 147408
>gb|AE005045.1| Halobacterium sp. NRC-1 section 76 of 170 of the complete genome Length = 10087 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cgccaccggcgaggaggcgg 269 |||||||||||||||||||| Sbjct: 9524 cgccaccggcgaggaggcgg 9543
>emb|AJ295694.3|CBO295694 Clostridium botulinum gerAA, gerAB and gerAC genes Length = 3884 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aaaacataaacacaaattta 74 |||||||||||||||||||| Sbjct: 2477 aaaacataaacacaaattta 2458
>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence Length = 226237 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 gaactgaagcatctaaaaaa 465 |||||||||||||||||||| Sbjct: 206536 gaactgaagcatctaaaaaa 206517
>gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 of 74 of the complete sequence Length = 207432 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 aaggccttcttctttcgattcgca 375 ||||||||||||||| |||||||| Sbjct: 127578 aaggccttcttctttggattcgca 127601
>gb|AC174679.2| Mus musculus BAC clone CH36-470B20 from chromosome 17, complete sequence Length = 174378 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcacagcttcaaaacataaa 64 |||||||||||||||||||| Sbjct: 169263 tcacagcttcaaaacataaa 169244
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 cggcttgggcttctcgacga 564 |||||||||||||||||||| Sbjct: 2297918 cggcttgggcttctcgacga 2297899
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 gcggcgttctggagcgcgca 622 |||||||||||||||||||| Sbjct: 995302 gcggcgttctggagcgcgca 995321
>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence Length = 182245 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 gaactgaagcatctaaaaaa 465 |||||||||||||||||||| Sbjct: 115349 gaactgaagcatctaaaaaa 115330
>dbj|AP002534.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 3/4 Length = 300000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 cttcaaaacataaacacaaa 70 |||||||||||||||||||| Sbjct: 78648 cttcaaaacataaacacaaa 78667
>dbj|AB045361.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:713i11, complete sequence Length = 148081 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 cttcaaaacataaacacaaa 70 |||||||||||||||||||| Sbjct: 125751 cttcaaaacataaacacaaa 125770 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,079,592 Number of Sequences: 3902068 Number of extensions: 5079592 Number of successful extensions: 103878 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102963 Number of HSP's gapped (non-prelim): 912 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
