ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12p13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481639.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
2gb|DQ083199.1| Oryza sativa (indica cultivar-group) clone 5S11F1... 101 2e-18
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
5dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
6dbj|AK070992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
7gb|AY106087.1| Zea mays PCO109463 mRNA sequence 92 2e-15
8emb|AJ003025.1|OSENOYLAC Oryza sativa mRNA for enoyl-ACP reductase 86 1e-13
9ref|XM_450461.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
11dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
12dbj|AK103141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
13gb|BT016571.1| Zea mays clone Contig404 mRNA sequence 66 1e-07
14gb|AY112451.1| Zea mays CL3046_1 mRNA sequence 66 1e-07
15emb|AJ243090.1|BNA243090 Brassica napus mRNA for enoyl-[acyl-car... 52 0.001
16gb|S60064.1|S60064 Brassica napus enoyl-acyl carrier protein red... 52 0.001
17emb|AJ243088.1|BNA243088 Brassica napus mRNA for enoyl-[acyl-car... 50 0.006
18gb|AC102296.6| Mus musculus chromosome 3, clone RP24-389G6, comp... 46 0.089
19emb|X95462.1|BNENOYLRD B.napus mRNA for enoyl reductase 46 0.089
20emb|AJ243087.1|BNA243087 Brassica napus mRNA for enoyl-[acyl-car... 46 0.089
21gb|AY970203.1| Uncultured zygomycete isolate dfmo1059_226 18S ri... 42 1.4
22emb|AJ243089.1|BNA243089 Brassica napus mRNA for enoyl-[acyl-car... 42 1.4
23gb|AY819068.1| Annona glabra isolate Taitung-009 trnL-trnF inter... 40 5.5
24ref|NM_117849.2| Arabidopsis thaliana HAT1; DNA binding / transc... 40 5.5
25gb|AC159309.2| Mus musculus BAC clone RP23-157H14 from chromosom... 40 5.5
26gb|AC111113.17| Mus musculus chromosome 1, clone RP23-205B8, com... 40 5.5
27gb|AC161244.2| Mus musculus BAC clone RP24-393O16 from chromosom... 40 5.5
28gb|AC124736.3| Mus musculus BAC clone RP23-318J20 from chromosom... 40 5.5
29gb|AC122393.3| Mus musculus BAC clone RP24-83E21 from chromosome... 40 5.5
30emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.5
31emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, ... 40 5.5
32gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, comple... 40 5.5
33dbj|AK141345.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 5.5
34gb|AC090539.6| Homo sapiens chromosome 8, clone RP11-759A9, comp... 40 5.5
35dbj|AK029704.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.5
36dbj|AK016592.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.5
37gb|BT006112.1| Arabidopsis thaliana clone U50164 putative homeob... 40 5.5
38dbj|AK048935.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 5.5
39gb|BT005756.1| Arabidopsis thaliana clone RAFL15-36-J21 (R50164)... 40 5.5
40gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom... 40 5.5
41gb|AC118029.11| Mus musculus chromosome 9, clone RP23-465I17, co... 40 5.5
42gb|AC131187.4| Mus musculus BAC clone RP24-250M7 from 13, comple... 40 5.5
43emb|CT030688.5| Mouse DNA sequence from clone RP23-143G11 on chr... 40 5.5
44gb|AC168048.3| Mus musculus BAC clone RP24-335I13 from chromosom... 40 5.5
45gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, comp... 40 5.5
46gb|U09333.1|ATU09333 Arabidopsis thaliana clone HAT1 homeobox pr... 40 5.5
47gb|U09332.1|ATU09332 Arabidopsis thaliana clone HAT1 homeobox pr... 40 5.5
48emb|AJ441252.1|ATH441252 Arabidopsis thaliana mRNA for homeodoma... 40 5.5 
>ref|XM_481639.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1647

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||| |||||| |||| || |||||||||||||| || |||||||| || 
Sbjct: 1314 gtagggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgag 1255

                                                                   
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
            |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 1254 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 1200
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>gb|DQ083199.1| Oryza sativa (indica cultivar-group) clone 5S11F12 mRNA sequence
          Length = 443

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 295 gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
           |||||||||| ||| |||||| |||| || |||||||||||||| || |||||||| || 
Sbjct: 273 gtagggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgag 214

                                                                  
Query: 355 ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
           |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 213 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 159
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                            
Query: 295      gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
                |||||||||| ||| |||||| |||| || |||||||||||||| || |||||||| || 
Sbjct: 14411416 gtagggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgag 14411357

                                                                       
Query: 355      ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
                |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 14411356 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 14411302
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>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0049I01
          Length = 140261

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||| |||||| |||| || |||||||||||||| || |||||||| || 
Sbjct: 6284 gtagggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgag 6225

                                                                   
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
            |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 6224 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 6170
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>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0670E08
          Length = 133106

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                         
Query: 295   gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
             |||||||||| ||| |||||| |||| || |||||||||||||| || |||||||| || 
Sbjct: 55699 gtagggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgag 55640

                                                                    
Query: 355   ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
             |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 55639 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 55585
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>dbj|AK070992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077K10, full
            insert sequence
          Length = 1647

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||| |||||| |||| || |||||||||||||| || |||||||| || 
Sbjct: 1314 gtagggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgag 1255

                                                                   
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
            |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 1254 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 1200
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>gb|AY106087.1| Zea mays PCO109463 mRNA sequence
          Length = 1496

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 292  aaagtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagtt 351
            ||||| ||||||| ||  |||||  |||| |||||||| |||||||| || |||| ||||
Sbjct: 1226 aaagtggggctgtcaagtgcaagtcccattgtgttgagcccattgtcaacgtaaatagtt 1167

                                                        
Query: 352  gaaccagngattgcagatgccaatggagacaccaagaatgctgc 395
            ||||||| |||||| |||||||| |||||||||| |||||||||
Sbjct: 1166 gaaccagtgattgctgatgccaaaggagacaccaggaatgctgc 1123
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>emb|AJ003025.1|OSENOYLAC Oryza sativa mRNA for enoyl-ACP reductase
          Length = 1520

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||| |||||| |||| || |||||||||||||  || || ||||| || 
Sbjct: 1151 gtagggctgtcaactgcaagccccattgtattgagtccattgtgaacgtacacagtcgag 1092

                                                                   
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
            |||| ||| || || |||||||||||||||| ||||||||||| | | |||||||
Sbjct: 1091 ccagtgatagcggaagccaatggagacaccaggaatgctgctgtgttccccactt 1037
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>ref|XM_450461.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1652

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||  |||||  |||| || ||||| |||||||| ||||| | |||||| 
Sbjct: 1230 gtagggctgtcaagtgcaagtcccattgtattgagcccattgtcaacatagatagttgat 1171

                                                                   
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
            |||| ||||||||||||||| || ||  | ||||||||||||| | | |||||||
Sbjct: 1170 ccagtgattgcagatgccaacggcgatgctaagaatgctgctgtgttccccactt 1116
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                           
Query: 295     gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
               |||||||||| ||  |||||  |||| || ||||| |||||||| ||||| | |||||| 
Sbjct: 5731336 gtagggctgtcaagtgcaagtcccattgtattgagcccattgtcaacatagatagttgat 5731277

                                                                      
Query: 355     ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
               |||| ||||||||||||||| || ||  | ||||||||||||| | | |||||||
Sbjct: 5731276 ccagtgattgcagatgccaacggcgatgctaagaatgctgctgtgttccccactt 5731222
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>dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0701E06
          Length = 123415

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                         
Query: 295   gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
             |||||||||| ||  |||||  |||| || ||||| |||||||| ||||| | |||||| 
Sbjct: 27541 gtagggctgtcaagtgcaagtcccattgtattgagcccattgtcaacatagatagttgat 27482

                                                                    
Query: 355   ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
             |||| ||||||||||||||| || ||  | ||||||||||||| | | |||||||
Sbjct: 27481 ccagtgattgcagatgccaacggcgatgctaagaatgctgctgtgttccccactt 27427
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>dbj|AK103141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120G12, full
            insert sequence
          Length = 1652

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||  |||||  |||| || ||||| |||||||| ||||| | |||||| 
Sbjct: 1230 gtagggctgtcaagtgcaagtcccattgtattgagcccattgtcaacatagatagttgat 1171

                                                                   
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctgcgntncccactt 409
            |||| ||||||||||||||| || ||  | ||||||||||||| | | |||||||
Sbjct: 1170 ccagtgattgcagatgccaacggcgatgctaagaatgctgctgtgttccccactt 1116
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>gb|BT016571.1| Zea mays clone Contig404 mRNA sequence
          Length = 1517

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||  |||||| |||| || ||||| |||||||| ||||||||||| || 
Sbjct: 1181 gtagggctgtcaattgcaagccccattgtattgagcccattgtcaacataaacagtcgag 1122

                                                       
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctg 397
            || | ||| ||||| ||||||| ||| |||| |||||| ||||
Sbjct: 1121 ccggtgatggcagaagccaatgaagaaaccaggaatgcagctg 1079
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>gb|AY112451.1| Zea mays CL3046_1 mRNA sequence
          Length = 1482

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  gtagggctgtnaaccgcaagcgccatcgtgttgagtccattgtcgacataaacagttgaa 354
            |||||||||| ||  |||||| |||| || ||||| |||||||| ||||||||||| || 
Sbjct: 1177 gtagggctgtcaattgcaagccccattgtattgagcccattgtcaacataaacagtcgag 1118

                                                       
Query: 355  ccagngattgcagatgccaatggagacaccaagaatgctgctg 397
            || | ||| ||||| ||||||| ||| |||| |||||| ||||
Sbjct: 1117 ccggtgatggcagaagccaatgaagaaaccaggaatgcagctg 1075
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>emb|AJ243090.1|BNA243090 Brassica napus mRNA for enoyl-[acyl-carrier protein] reductase,
            isoform B2 (enrB2 gene)
          Length = 1380

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  ccattgtcgacataaacagttgaaccagngattgcagatgccaatggagacaccaagaat 390
            |||||||| ||||| |  |||| |||||  || ||||||||||||||||| |||||||| 
Sbjct: 1161 ccattgtccacatagatggttgcaccagttatggcagatgccaatggagataccaagaag 1102

                 
Query: 391  gctgc 395
            |||||
Sbjct: 1101 gctgc 1097
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>gb|S60064.1|S60064 Brassica napus enoyl-acyl carrier protein reductase mRNA, complete
            cds
          Length = 1358

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  ccattgtcgacataaacagttgaaccagngattgcagatgccaatggagacaccaagaat 390
            |||||||| ||||| |  |||| |||||  || ||||||||||||||||| |||||||| 
Sbjct: 1143 ccattgtccacatagatggttgcaccagttatggcagatgccaatggagataccaagaag 1084

                 
Query: 391  gctgc 395
            |||||
Sbjct: 1083 gctgc 1079
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>emb|AJ243088.1|BNA243088 Brassica napus mRNA for enoyl-[acyl-carrier protein] reductase,
            isoform A2 (enrA2 gene)
          Length = 1332

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 331  ccattgtcgacataaacagttgaaccagngattgcagatgccaatggagacaccaagaat 390
            |||||||| ||||| |  |||| |||||  || ||||| ||||||||||| |||||||| 
Sbjct: 1136 ccattgtcaacatagatggttgcaccagttatggcagaggccaatggagataccaagaag 1077

                    
Query: 391  gctgctgc 398
            ||||||||
Sbjct: 1076 gctgctgc 1069
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>gb|AC102296.6| Mus musculus chromosome 3, clone RP24-389G6, complete sequence
          Length = 184243

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 70     acttctatttcttcatgacaactttgt 96
              |||||| ||||||||||||||||||||
Sbjct: 143109 acttctgtttcttcatgacaactttgt 143135
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>emb|X95462.1|BNENOYLRD B.napus mRNA for enoyl reductase
          Length = 1351

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 364  gcagatgccaatggagacaccaagaatgctgctgc 398
            ||||| ||||||||||| |||||||| ||||||||
Sbjct: 1126 gcagaggccaatggagataccaagaaggctgctgc 1092
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>emb|AJ243087.1|BNA243087 Brassica napus mRNA for enoyl-[acyl-carrier protein] reductase,
            isoform 1A, (enrA1 gene)
          Length = 1349

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 364  gcagatgccaatggagacaccaagaatgctgctgc 398
            ||||| ||||||||||| |||||||| ||||||||
Sbjct: 1128 gcagaggccaatggagataccaagaaggctgctgc 1094
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>gb|AY970203.1| Uncultured zygomycete isolate dfmo1059_226 18S ribosomal RNA gene,
           partial sequence; internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence; and 28S ribosomal RNA gene, partial
           sequence
          Length = 595

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 3   cttttgtctcctcttccaaat 23
           |||||||||||||||||||||
Sbjct: 548 cttttgtctcctcttccaaat 568
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>emb|AJ243089.1|BNA243089 Brassica napus mRNA for enoyl-[acyl-carrier protein] reductase,
            isoform B1 (enrB1 gene)
          Length = 1384

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 331  ccattgtcgacataaacagttgaaccagngattgcagatgccaatggagacaccaagaat 390
            |||||||| ||||| |  |||| |||||  || ||||| ||||||||||| |||||||| 
Sbjct: 1155 ccattgtccacatagatggttgcaccagttatggcagaggccaatggagataccaagaag 1096

                    
Query: 391  gctgctgc 398
            || |||||
Sbjct: 1095 gccgctgc 1088
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>gb|AY819068.1| Annona glabra isolate Taitung-009 trnL-trnF intergenic spacer,
          partial sequence; chloroplast
          Length = 433

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 4  ttttgtctcctcttccaaat 23
          ||||||||||||||||||||
Sbjct: 53 ttttgtctcctcttccaaat 72
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>ref|NM_117849.2| Arabidopsis thaliana HAT1; DNA binding / transcription factor
           AT4G17460 (HAT1) mRNA, complete cds
          Length = 1194

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   tgtctcctcttccaaatcca 26
           ||||||||||||||||||||
Sbjct: 407 tgtctcctcttccaaatcca 388
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>gb|AC159309.2| Mus musculus BAC clone RP23-157H14 from chromosome 16, complete sequence
          Length = 201546

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     acttctatttcttcatgaca 89
              ||||||||||||||||||||
Sbjct: 101739 acttctatttcttcatgaca 101758
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>gb|AC111113.17| Mus musculus chromosome 1, clone RP23-205B8, complete sequence
          Length = 201485

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tgcagatgccaatggagaca 382
            ||||||||||||||||||||
Sbjct: 4946 tgcagatgccaatggagaca 4965
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>gb|AC161244.2| Mus musculus BAC clone RP24-393O16 from chromosome 13, complete
             sequence
          Length = 201429

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gaaatcaagaaaatgtttat 285
             ||||||||||||||||||||
Sbjct: 94958 gaaatcaagaaaatgtttat 94977
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>gb|AC124736.3| Mus musculus BAC clone RP23-318J20 from chromosome 15, complete
             sequence
          Length = 201803

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ccaatggagacaccaagaat 390
             ||||||||||||||||||||
Sbjct: 81808 ccaatggagacaccaagaat 81827
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>gb|AC122393.3| Mus musculus BAC clone RP24-83E21 from chromosome 15, complete sequence
          Length = 223656

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    ccaatggagacaccaagaat 390
              ||||||||||||||||||||
Sbjct: 222879 ccaatggagacaccaagaat 222898
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>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8
          Length = 207674

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tgtctcctcttccaaatcca 26
              ||||||||||||||||||||
Sbjct: 104944 tgtctcctcttccaaatcca 104925
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>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46
          Length = 198788

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tgtctcctcttccaaatcca 26
             ||||||||||||||||||||
Sbjct: 94309 tgtctcctcttccaaatcca 94290
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>gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, complete sequence
          Length = 173836

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   caaattcatgttgaactaca 197
             ||||||||||||||||||||
Sbjct: 66656 caaattcatgttgaactaca 66637
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>dbj|AK141345.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430035N05 product:hypothetical
            protein, full insert sequence
          Length = 2574

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 363  tgcagatgccaatggagaca 382
            ||||||||||||||||||||
Sbjct: 1959 tgcagatgccaatggagaca 1940
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>gb|AC090539.6| Homo sapiens chromosome 8, clone RP11-759A9, complete sequence
          Length = 171690

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    aaatcaagaaaatgtttatg 286
              ||||||||||||||||||||
Sbjct: 103324 aaatcaagaaaatgtttatg 103343
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>dbj|AK029704.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930484E23 product:weakly similar to
            AT2G27390 PROTEIN [Arabidopsis thaliana], full insert
            sequence
          Length = 2636

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tgcagatgccaatggagaca 382
            ||||||||||||||||||||
Sbjct: 1659 tgcagatgccaatggagaca 1678
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>dbj|AK016592.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933400F21 product:unclassifiable, full
            insert sequence
          Length = 2562

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tgcagatgccaatggagaca 382
            ||||||||||||||||||||
Sbjct: 1656 tgcagatgccaatggagaca 1675
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>gb|BT006112.1| Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper
           protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA,
           complete cds
          Length = 880

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   tgtctcctcttccaaatcca 26
           ||||||||||||||||||||
Sbjct: 225 tgtctcctcttccaaatcca 206
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>dbj|AK048935.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230083K19
            product:unclassifiable, full insert sequence
          Length = 2959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  gaaatcaagaaaatgtttat 285
            ||||||||||||||||||||
Sbjct: 2272 gaaatcaagaaaatgtttat 2253
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>gb|BT005756.1| Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative
           homeobox-leucine zipper protein HAT1 (HD-Zip protein 1)
           (At4g17460) mRNA, complete cds
          Length = 1159

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   tgtctcctcttccaaatcca 26
           ||||||||||||||||||||
Sbjct: 407 tgtctcctcttccaaatcca 388
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>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete
            sequence
          Length = 210202

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  agaaaatgtttatgtagacaaagt 296
            ||||||||||||||||| ||||||
Sbjct: 7264 agaaaatgtttatgtaggcaaagt 7241
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>gb|AC118029.11| Mus musculus chromosome 9, clone RP23-465I17, complete sequence
          Length = 163283

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 273    agaaaatgtttatgtagacaaagt 296
              ||||||||||||||||| ||||||
Sbjct: 130648 agaaaatgtttatgtaggcaaagt 130625
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>gb|AC131187.4| Mus musculus BAC clone RP24-250M7 from 13, complete sequence
          Length = 159288

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    tcagaaatcaagaaaatgtt 282
              ||||||||||||||||||||
Sbjct: 109861 tcagaaatcaagaaaatgtt 109880
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>emb|CT030688.5| Mouse DNA sequence from clone RP23-143G11 on chromosome 16, complete
            sequence
          Length = 203342

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   acttctatttcttcatgaca 89
            ||||||||||||||||||||
Sbjct: 7322 acttctatttcttcatgaca 7341
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>gb|AC168048.3| Mus musculus BAC clone RP24-335I13 from chromosome 16, complete sequence
          Length = 163057

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     acttctatttcttcatgaca 89
              ||||||||||||||||||||
Sbjct: 158296 acttctatttcttcatgaca 158315
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>gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, complete sequence
          Length = 206640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tgcagatgccaatggagaca 382
              ||||||||||||||||||||
Sbjct: 166787 tgcagatgccaatggagaca 166806
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>gb|U09333.1|ATU09333 Arabidopsis thaliana clone HAT1 homeobox protein gene, complete cds
          Length = 1191

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   tgtctcctcttccaaatcca 26
           ||||||||||||||||||||
Sbjct: 342 tgtctcctcttccaaatcca 323
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>gb|U09332.1|ATU09332 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   tgtctcctcttccaaatcca 26
           ||||||||||||||||||||
Sbjct: 372 tgtctcctcttccaaatcca 353
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>emb|AJ441252.1|ATH441252 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein
           HAT1
          Length = 849

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   tgtctcctcttccaaatcca 26
           ||||||||||||||||||||
Sbjct: 225 tgtctcctcttccaaatcca 206


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,274,089
Number of Sequences: 3902068
Number of extensions: 3274089
Number of successful extensions: 69443
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69352
Number of HSP's gapped (non-prelim): 91
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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