| Clone Name | rbags13e19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038N14, full insert sequence Length = 2108 Score = 347 bits (175), Expect = 3e-92 Identities = 268/299 (89%) Strand = Plus / Minus Query: 228 ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287 |||||| |||||| ||| || || |||||||||||||| ||||||| ||||||||||||| Sbjct: 1973 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 1914 Query: 288 accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347 ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| |||| Sbjct: 1913 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 1854 Query: 348 gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407 |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| |||||| Sbjct: 1853 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 1794 Query: 408 tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctgtccgtg 467 |||||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||| Sbjct: 1793 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctatctgtg 1734 Query: 468 cacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcgat 526 ||||| |||||||||||||| | |||||||| ||||||||||| || ||||| ||||| Sbjct: 1733 cacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcgat 1675
>ref|NM_187659.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2277 Score = 339 bits (171), Expect = 6e-90 Identities = 249/275 (90%) Strand = Plus / Minus Query: 252 tcgtgcagcgggtgccccttgaggttcctctccatcaccctcctggcaagggacacctgc 311 |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| Sbjct: 2261 tcgtgcagcgggtggcccttgatgttcctctccatcaccctcctggcgagggacacctgc 2202 Query: 312 ttgcccaccgcgaatacgaaagccttgccgtcgcccgacgcgccacgggccgtcctgccg 371 || ||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| Sbjct: 2201 ttccccaccgcgaacacgaacgccttgccgttgcccgacgcgccgcgggccgtcctgccg 2142 Query: 372 accctccgcacgtactcgctcgggtcgcgggggtagtcgaacagcaccacgtggttcacg 431 || | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2141 acgcgccgcacgtactcactcgggtcgcgcgggtagtcgaacagcaccacgtggttcacg 2082 Query: 432 ttcgtgaagtcgatacctcgtgacgccctgtccgtgcacacgaggaacatcgagtccgta 491 |||| |||||||| ||||| |||||||| || |||||||| |||||||||||||| | Sbjct: 2081 ttcgcaaagtcgatgcctcgcgacgccctatctgtgcacaccaggaacatcgagtcagcc 2022 Query: 492 gtctgcttcttcaggaactccttcatgtttgcgat 526 |||||||| ||||||||||| || ||||| ||||| Sbjct: 2021 gtctgcttgttcaggaactctttgatgttggcgat 1987
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 297 bits (150), Expect = 2e-77 Identities = 213/234 (91%) Strand = Plus / Minus Query: 228 ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287 |||||| |||||| ||| || || |||||||||||||| ||||||| ||||||||||||| Sbjct: 487214 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 487155 Query: 288 accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347 ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| |||| Sbjct: 487154 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 487095 Query: 348 gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407 |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| |||||| Sbjct: 487094 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 487035 Query: 408 tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctg 461 |||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 487034 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctg 486981 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 465 gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524 |||||||| |||||||||||||| | |||||||| ||||||||||| || ||||| ||| Sbjct: 486889 gtgcacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcg 486830 Query: 525 at 526 || Sbjct: 486829 at 486828
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 297 bits (150), Expect = 2e-77 Identities = 213/234 (91%) Strand = Plus / Minus Query: 228 ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287 |||||| |||||| ||| || || |||||||||||||| ||||||| ||||||||||||| Sbjct: 487212 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 487153 Query: 288 accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347 ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| |||| Sbjct: 487152 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 487093 Query: 348 gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407 |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| |||||| Sbjct: 487092 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 487033 Query: 408 tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctg 461 |||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 487032 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctg 486979 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 465 gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524 |||||||| |||||||||||||| | |||||||| ||||||||||| || ||||| ||| Sbjct: 486887 gtgcacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcg 486828 Query: 525 at 526 || Sbjct: 486827 at 486826
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 297 bits (150), Expect = 2e-77 Identities = 213/234 (91%) Strand = Plus / Minus Query: 228 ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287 |||||| |||||| ||| || || |||||||||||||| ||||||| ||||||||||||| Sbjct: 85674 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 85615 Query: 288 accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347 ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| |||| Sbjct: 85614 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 85555 Query: 348 gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407 |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| |||||| Sbjct: 85554 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 85495 Query: 408 tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctg 461 |||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 85494 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctg 85441 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 465 gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524 |||||||| |||||||||||||| | |||||||| ||||||||||| || ||||| ||| Sbjct: 85349 gtgcacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcg 85290 Query: 525 at 526 || Sbjct: 85289 at 85288
>gb|AY104940.1| Zea mays PCO149645 mRNA sequence Length = 752 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Minus Query: 465 gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524 |||||||| |||||||| ||||| | || ||||| ||||| |||||||| ||||||||| Sbjct: 649 gtgcacacaaggaacatggagtcagccgtttgcttgttcagaaactccttgatgtttgcg 590 Query: 525 atgcgtttcgcctggtccaatgcagcatggaacggtaggacctttatctgtgttgctttc 584 ||||| | ||||| |||| ||||||||||| || || || || ||||||| || ||| Sbjct: 589 atgcgctgggcctgatccagcgcagcatggaaggggagaactttgatctgtgaggccttc 530 Query: 585 ctgtc 589 ||||| Sbjct: 529 ctgtc 525
>gb|DQ273253.1| Lycopersicon esculentum endogenous virus LycEPRV_Le3, partial sequence Length = 5066 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Plus Query: 537 tggtccaatgcagcatggaacggtaggacctttatc 572 ||||||| ||||||||||||||||| ||| |||||| Sbjct: 1660 tggtccagtgcagcatggaacggtaagacttttatc 1695
>emb|BX936329.9| Zebrafish DNA sequence from clone CH211-1F1 in linkage group 3, complete sequence Length = 76179 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 88 caggcatgatcagcagaatact 109 |||||||||||||||||||||| Sbjct: 31692 caggcatgatcagcagaatact 31671
>emb|AL359532.26| Human DNA sequence from clone RP11-330O11 on chromosome 10 Contains the 3' end of the gene for a novel protein (LOC220929) (FLJ32761), a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase) (DDH10) pseudogene and a CpG island, complete sequence Length = 179798 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 ttgcatttattttgaatgttaa 25 |||||||||||||||||||||| Sbjct: 113253 ttgcatttattttgaatgttaa 113232
>ref|NM_001007300.1| Danio rerio zgc:92080 (zgc:92080), mRNA Length = 2425 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 caggcatgatcagcagaatact 109 |||||||||||||||||||||| Sbjct: 1104 caggcatgatcagcagaatact 1125
>gb|BC085631.1| Danio rerio zgc:92080, mRNA (cDNA clone MGC:92080 IMAGE:7046812), complete cds Length = 2425 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 caggcatgatcagcagaatact 109 |||||||||||||||||||||| Sbjct: 1104 caggcatgatcagcagaatact 1125
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 406 agtcgaacagcaccacgtggttcacg 431 ||||||||||||||||||||| |||| Sbjct: 2952828 agtcgaacagcaccacgtggtccacg 2952853
>gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete sequence Length = 34919 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ttctgattgtacacatattta 60 ||||||||||||||||||||| Sbjct: 1250 ttctgattgtacacatattta 1270
>emb|AL158212.15| Human DNA sequence from clone RP11-57H14 on chromosome 10 Contains the 5' end of the TCF7L2 gene for transcription factor 7-like 2 (T-cell specific, HMG-box), two novel genes and two CpG islands, complete sequence Length = 166464 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 agctgtgggggcagaggagca 211 ||||||||||||||||||||| Sbjct: 16276 agctgtgggggcagaggagca 16256
>gb|BC037530.1| Homo sapiens cDNA clone IMAGE:4801297 Length = 4249 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 agctgtgggggcagaggagca 211 ||||||||||||||||||||| Sbjct: 1748 agctgtgggggcagaggagca 1728
>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21, complete sequence Length = 242772 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ccttgcatttattttgaatgt 22 ||||||||||||||||||||| Sbjct: 122192 ccttgcatttattttgaatgt 122212
>emb|AL049387.1|HSM800172 Homo sapiens mRNA; cDNA DKFZp586N1918 (from clone DKFZp586N1918) Length = 3375 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 agctgtgggggcagaggagca 211 ||||||||||||||||||||| Sbjct: 873 agctgtgggggcagaggagca 853
>gb|AC087333.2|AC087333 Takifugu rubripes clone 244C11, complete sequence Length = 78437 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 ttcctctccatcaccctcctg 296 ||||||||||||||||||||| Sbjct: 73654 ttcctctccatcaccctcctg 73674
>gb|AY724521.1| Rattus norvegicus clone UI-R-FJ0-cpz-c-09-0-UI unknown mRNA Length = 3231 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tcttcaggaactccttcatg 518 |||||||||||||||||||| Sbjct: 1298 tcttcaggaactccttcatg 1279
>gb|AF198097.2| Homo sapiens chromosome X multiple clones map p11.23, complete sequence Length = 69522 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 ggacctttatctgtgttgct 581 |||||||||||||||||||| Sbjct: 51399 ggacctttatctgtgttgct 51380
>gb|AY303753.1| Takifugu rubripes erythropoietin (EPO) gene, complete cds, alternatively spliced Length = 63527 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 cttcttcaggaactccttca 516 |||||||||||||||||||| Sbjct: 44614 cttcttcaggaactccttca 44595
>gb|AC147924.2| Xenopus tropicalis clone CH216-60D12, complete sequence Length = 186585 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atacatactactgcaaatacttgc 187 ||||||| |||||||||||||||| Sbjct: 164287 atacatattactgcaaatacttgc 164310
>emb|AL663118.2| Human DNA sequence from clone RP13-377G1 on chromosome Xp11.22-11.3 Contains the 3' end of the CLCN5 gene for chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease), the gene for a novel protein similar to peptide YY (PYY) and two CpG islands, complete sequence Length = 146633 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 ggacctttatctgtgttgct 581 |||||||||||||||||||| Sbjct: 29269 ggacctttatctgtgttgct 29250
>emb|AL137010.4| Human DNA sequence from clone RP3-526L9 on chromosome 6 Contains a SWI/SNF related, matrix associated, actindependent regulator of chromatin, subfamily e, member 1 (SMARCE1) (BAF57) pseudogene and part of a novel gene, complete sequence Length = 29512 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tgacagtagtgtgtatacac 148 |||||||||||||||||||| Sbjct: 22236 tgacagtagtgtgtatacac 22217
>emb|AJ720008.1| Gallus gallus mRNA for hypothetical protein, clone 9f22 Length = 1860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gccgtcctgccgaccctccg 379 |||||||||||||||||||| Sbjct: 288 gccgtcctgccgaccctccg 269
>ref|NM_001006332.1| Gallus gallus beclin 1 (coiled-coil, myosin-like BCL2 interacting protein) (BECN1), mRNA Length = 1860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gccgtcctgccgaccctccg 379 |||||||||||||||||||| Sbjct: 288 gccgtcctgccgaccctccg 269
>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence Length = 79804 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tcctctccatcaccctcctg 296 |||||||||||||||||||| Sbjct: 73211 tcctctccatcaccctcctg 73230
>gb|AE005756.1| Caulobacter crescentus CB15 section 82 of 359 of the complete genome Length = 10951 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 392 cgggtcgcgggggtagtcgaacagcacc 419 ||||||||||| ||||||| |||||||| Sbjct: 866 cgggtcgcgggcgtagtcggacagcacc 839
>gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208992 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 gtagtctgcttcttcaggaa 508 |||||||||||||||||||| Sbjct: 154755 gtagtctgcttcttcaggaa 154774
>gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212483 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 gtagtctgcttcttcaggaa 508 |||||||||||||||||||| Sbjct: 155104 gtagtctgcttcttcaggaa 155085
>gb|AC068324.8|AC068324 Arabidopsis thaliana chromosome 1 BAC F13A11 genomic sequence, complete sequence Length = 95173 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cttgcatttattttgaatgt 22 |||||||||||||||||||| Sbjct: 52715 cttgcatttattttgaatgt 52696
>ref|XM_216112.3| PREDICTED: Rattus norvegicus transportin 3 (predicted) (Tnpo3_predicted), mRNA Length = 3505 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tcttcaggaactccttcatg 518 |||||||||||||||||||| Sbjct: 1552 tcttcaggaactccttcatg 1533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,204,627 Number of Sequences: 3902068 Number of extensions: 4204627 Number of successful extensions: 77066 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76896 Number of HSP's gapped (non-prelim): 170 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)