ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13e19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
2ref|NM_187659.1| Oryza sativa (japonica cultivar-group), predic... 339 6e-90
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 297 2e-77
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 297 2e-77
5gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome... 297 2e-77
6gb|AY104940.1| Zea mays PCO149645 mRNA sequence 66 1e-07
7gb|DQ273253.1| Lycopersicon esculentum endogenous virus LycEPRV_... 48 0.033
8emb|BX936329.9| Zebrafish DNA sequence from clone CH211-1F1 in l... 44 0.51
9emb|AL359532.26| Human DNA sequence from clone RP11-330O11 on ch... 44 0.51
10ref|NM_001007300.1| Danio rerio zgc:92080 (zgc:92080), mRNA 44 0.51
11gb|BC085631.1| Danio rerio zgc:92080, mRNA (cDNA clone MGC:92080... 44 0.51
12gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.51
13gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete seq... 42 2.0
14emb|AL158212.15| Human DNA sequence from clone RP11-57H14 on chr... 42 2.0
15gb|BC037530.1| Homo sapiens cDNA clone IMAGE:4801297 42 2.0
16emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in ... 42 2.0
17emb|AL049387.1|HSM800172 Homo sapiens mRNA; cDNA DKFZp586N1918 (... 42 2.0
18gb|AC087333.2|AC087333 Takifugu rubripes clone 244C11, complete ... 42 2.0
19gb|AY724521.1| Rattus norvegicus clone UI-R-FJ0-cpz-c-09-0-UI un... 40 8.0
20gb|AF198097.2| Homo sapiens chromosome X multiple clones map p11... 40 8.0
21gb|AY303753.1| Takifugu rubripes erythropoietin (EPO) gene, comp... 40 8.0
22gb|AC147924.2| Xenopus tropicalis clone CH216-60D12, complete se... 40 8.0
23emb|AL663118.2| Human DNA sequence from clone RP13-377G1 on chro... 40 8.0
24emb|AL137010.4| Human DNA sequence from clone RP3-526L9 on chrom... 40 8.0
25emb|AJ720008.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.0
26ref|NM_001006332.1| Gallus gallus beclin 1 (coiled-coil, myosin-... 40 8.0
27gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complet... 40 8.0
28gb|AE005756.1| Caulobacter crescentus CB15 section 82 of 359 of ... 40 8.0
29gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Canc... 40 8.0
30gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Canc... 40 8.0
31gb|AC068324.8|AC068324 Arabidopsis thaliana chromosome 1 BAC F13... 40 8.0
32ref|XM_216112.3| PREDICTED: Rattus norvegicus transportin 3 (pre... 40 8.0

>dbj|AK065776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038N14, full
            insert sequence
          Length = 2108

 Score =  347 bits (175), Expect = 3e-92
 Identities = 268/299 (89%)
 Strand = Plus / Minus

                                                                        
Query: 228  ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287
            |||||| |||||| ||| || || |||||||||||||| ||||||| |||||||||||||
Sbjct: 1973 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 1914

                                                                        
Query: 288  accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347
            ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||
Sbjct: 1913 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 1854

                                                                        
Query: 348  gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407
            |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 1853 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 1794

                                                                        
Query: 408  tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctgtccgtg 467
            ||||||||||||||||||||||||||||  |||||||| ||||| |||||||| || |||
Sbjct: 1793 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctatctgtg 1734

                                                                       
Query: 468  cacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcgat 526
            ||||| |||||||||||||| |  |||||||| ||||||||||| || ||||| |||||
Sbjct: 1733 cacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcgat 1675



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>ref|NM_187659.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2277

 Score =  339 bits (171), Expect = 6e-90
 Identities = 249/275 (90%)
 Strand = Plus / Minus

                                                                        
Query: 252  tcgtgcagcgggtgccccttgaggttcctctccatcaccctcctggcaagggacacctgc 311
            |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 2261 tcgtgcagcgggtggcccttgatgttcctctccatcaccctcctggcgagggacacctgc 2202

                                                                        
Query: 312  ttgcccaccgcgaatacgaaagccttgccgtcgcccgacgcgccacgggccgtcctgccg 371
            || ||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct: 2201 ttccccaccgcgaacacgaacgccttgccgttgcccgacgcgccgcgggccgtcctgccg 2142

                                                                        
Query: 372  accctccgcacgtactcgctcgggtcgcgggggtagtcgaacagcaccacgtggttcacg 431
            || | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2141 acgcgccgcacgtactcactcgggtcgcgcgggtagtcgaacagcaccacgtggttcacg 2082

                                                                        
Query: 432  ttcgtgaagtcgatacctcgtgacgccctgtccgtgcacacgaggaacatcgagtccgta 491
            ||||  |||||||| ||||| |||||||| || |||||||| |||||||||||||| |  
Sbjct: 2081 ttcgcaaagtcgatgcctcgcgacgccctatctgtgcacaccaggaacatcgagtcagcc 2022

                                               
Query: 492  gtctgcttcttcaggaactccttcatgtttgcgat 526
            |||||||| ||||||||||| || ||||| |||||
Sbjct: 2021 gtctgcttgttcaggaactctttgatgttggcgat 1987



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  297 bits (150), Expect = 2e-77
 Identities = 213/234 (91%)
 Strand = Plus / Minus

                                                                          
Query: 228    ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287
              |||||| |||||| ||| || || |||||||||||||| ||||||| |||||||||||||
Sbjct: 487214 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 487155

                                                                          
Query: 288    accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347
              ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||
Sbjct: 487154 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 487095

                                                                          
Query: 348    gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407
              |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 487094 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 487035

                                                                    
Query: 408    tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctg 461
              ||||||||||||||||||||||||||||  |||||||| ||||| |||||||||
Sbjct: 487034 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctg 486981



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                          
Query: 465    gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524
              |||||||| |||||||||||||| |  |||||||| ||||||||||| || ||||| |||
Sbjct: 486889 gtgcacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcg 486830

                
Query: 525    at 526
              ||
Sbjct: 486829 at 486828



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  297 bits (150), Expect = 2e-77
 Identities = 213/234 (91%)
 Strand = Plus / Minus

                                                                          
Query: 228    ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287
              |||||| |||||| ||| || || |||||||||||||| ||||||| |||||||||||||
Sbjct: 487212 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 487153

                                                                          
Query: 288    accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347
              ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||
Sbjct: 487152 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 487093

                                                                          
Query: 348    gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407
              |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 487092 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 487033

                                                                    
Query: 408    tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctg 461
              ||||||||||||||||||||||||||||  |||||||| ||||| |||||||||
Sbjct: 487032 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctg 486979



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                          
Query: 465    gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524
              |||||||| |||||||||||||| |  |||||||| ||||||||||| || ||||| |||
Sbjct: 486887 gtgcacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcg 486828

                
Query: 525    at 526
              ||
Sbjct: 486827 at 486826



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>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03,
             complete sequence
          Length = 116214

 Score =  297 bits (150), Expect = 2e-77
 Identities = 213/234 (91%)
 Strand = Plus / Minus

                                                                         
Query: 228   ttctagaactagaagcacgggacgtcgtgcagcgggtgccccttgaggttcctctccatc 287
             |||||| |||||| ||| || || |||||||||||||| ||||||| |||||||||||||
Sbjct: 85674 ttctaggactagacgcatggcacatcgtgcagcgggtggcccttgatgttcctctccatc 85615

                                                                         
Query: 288   accctcctggcaagggacacctgcttgcccaccgcgaatacgaaagccttgccgtcgccc 347
             ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||
Sbjct: 85614 accctcctggcgagggacacctgcttccccaccgcgaacacgaacgccttgccgttgccc 85555

                                                                         
Query: 348   gacgcgccacgggccgtcctgccgaccctccgcacgtactcgctcgggtcgcgggggtag 407
             |||||||| ||||||||||||||||| | |||||||||||| ||||||||||| ||||||
Sbjct: 85554 gacgcgccgcgggccgtcctgccgacgcgccgcacgtactcactcgggtcgcgcgggtag 85495

                                                                   
Query: 408   tcgaacagcaccacgtggttcacgttcgtgaagtcgatacctcgtgacgccctg 461
             ||||||||||||||||||||||||||||  |||||||| ||||| |||||||||
Sbjct: 85494 tcgaacagcaccacgtggttcacgttcgcaaagtcgatgcctcgcgacgccctg 85441



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 465   gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524
             |||||||| |||||||||||||| |  |||||||| ||||||||||| || ||||| |||
Sbjct: 85349 gtgcacaccaggaacatcgagtcagccgtctgcttgttcaggaactctttgatgttggcg 85290

               
Query: 525   at 526
             ||
Sbjct: 85289 at 85288



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>gb|AY104940.1| Zea mays PCO149645 mRNA sequence
          Length = 752

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                       
Query: 465 gtgcacacgaggaacatcgagtccgtagtctgcttcttcaggaactccttcatgtttgcg 524
           |||||||| |||||||| ||||| |  || ||||| ||||| |||||||| |||||||||
Sbjct: 649 gtgcacacaaggaacatggagtcagccgtttgcttgttcagaaactccttgatgtttgcg 590

                                                                       
Query: 525 atgcgtttcgcctggtccaatgcagcatggaacggtaggacctttatctgtgttgctttc 584
           ||||| |  ||||| ||||  ||||||||||| || || || || |||||||  || |||
Sbjct: 589 atgcgctgggcctgatccagcgcagcatggaaggggagaactttgatctgtgaggccttc 530

                
Query: 585 ctgtc 589
           |||||
Sbjct: 529 ctgtc 525



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>gb|DQ273253.1| Lycopersicon esculentum endogenous virus LycEPRV_Le3, partial
            sequence
          Length = 5066

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 537  tggtccaatgcagcatggaacggtaggacctttatc 572
            ||||||| ||||||||||||||||| ||| ||||||
Sbjct: 1660 tggtccagtgcagcatggaacggtaagacttttatc 1695



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>emb|BX936329.9| Zebrafish DNA sequence from clone CH211-1F1 in linkage group 3,
             complete sequence
          Length = 76179

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    caggcatgatcagcagaatact 109
             ||||||||||||||||||||||
Sbjct: 31692 caggcatgatcagcagaatact 31671



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>emb|AL359532.26| Human DNA sequence from clone RP11-330O11 on chromosome 10 Contains the
              3' end of the gene for a novel protein (LOC220929)
              (FLJ32761), a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
              10 (RNA helicase) (DDH10) pseudogene and a CpG island,
              complete sequence
          Length = 179798

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 4      ttgcatttattttgaatgttaa 25
              ||||||||||||||||||||||
Sbjct: 113253 ttgcatttattttgaatgttaa 113232



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>ref|NM_001007300.1| Danio rerio zgc:92080 (zgc:92080), mRNA
          Length = 2425

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 88   caggcatgatcagcagaatact 109
            ||||||||||||||||||||||
Sbjct: 1104 caggcatgatcagcagaatact 1125



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>gb|BC085631.1| Danio rerio zgc:92080, mRNA (cDNA clone MGC:92080 IMAGE:7046812),
            complete cds
          Length = 2425

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 88   caggcatgatcagcagaatact 109
            ||||||||||||||||||||||
Sbjct: 1104 caggcatgatcagcagaatact 1125



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 406     agtcgaacagcaccacgtggttcacg 431
               ||||||||||||||||||||| ||||
Sbjct: 2952828 agtcgaacagcaccacgtggtccacg 2952853



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>gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete sequence
          Length = 34919

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 40   ttctgattgtacacatattta 60
            |||||||||||||||||||||
Sbjct: 1250 ttctgattgtacacatattta 1270



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>emb|AL158212.15| Human DNA sequence from clone RP11-57H14 on chromosome 10 Contains the
             5' end of the TCF7L2 gene for transcription factor 7-like
             2 (T-cell specific, HMG-box), two novel genes and two CpG
             islands, complete sequence
          Length = 166464

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   agctgtgggggcagaggagca 211
             |||||||||||||||||||||
Sbjct: 16276 agctgtgggggcagaggagca 16256



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>gb|BC037530.1| Homo sapiens cDNA clone IMAGE:4801297
          Length = 4249

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  agctgtgggggcagaggagca 211
            |||||||||||||||||||||
Sbjct: 1748 agctgtgggggcagaggagca 1728



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>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21,
              complete sequence
          Length = 242772

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      ccttgcatttattttgaatgt 22
              |||||||||||||||||||||
Sbjct: 122192 ccttgcatttattttgaatgt 122212



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>emb|AL049387.1|HSM800172 Homo sapiens mRNA; cDNA DKFZp586N1918 (from clone DKFZp586N1918)
          Length = 3375

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agctgtgggggcagaggagca 211
           |||||||||||||||||||||
Sbjct: 873 agctgtgggggcagaggagca 853



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>gb|AC087333.2|AC087333 Takifugu rubripes clone 244C11, complete sequence
          Length = 78437

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   ttcctctccatcaccctcctg 296
             |||||||||||||||||||||
Sbjct: 73654 ttcctctccatcaccctcctg 73674



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>gb|AY724521.1| Rattus norvegicus clone UI-R-FJ0-cpz-c-09-0-UI unknown mRNA
          Length = 3231

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 499  tcttcaggaactccttcatg 518
            ||||||||||||||||||||
Sbjct: 1298 tcttcaggaactccttcatg 1279



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>gb|AF198097.2| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 69522

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   ggacctttatctgtgttgct 581
             ||||||||||||||||||||
Sbjct: 51399 ggacctttatctgtgttgct 51380



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>gb|AY303753.1| Takifugu rubripes erythropoietin (EPO) gene, complete cds,
             alternatively spliced
          Length = 63527

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   cttcttcaggaactccttca 516
             ||||||||||||||||||||
Sbjct: 44614 cttcttcaggaactccttca 44595



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>gb|AC147924.2| Xenopus tropicalis clone CH216-60D12, complete sequence
          Length = 186585

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    atacatactactgcaaatacttgc 187
              ||||||| ||||||||||||||||
Sbjct: 164287 atacatattactgcaaatacttgc 164310



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>emb|AL663118.2| Human DNA sequence from clone RP13-377G1 on chromosome Xp11.22-11.3
             Contains the 3' end of the CLCN5 gene for chloride channel
             5 (nephrolithiasis 2, X-linked, Dent disease), the gene
             for a novel protein similar to peptide YY (PYY) and two
             CpG islands, complete sequence
          Length = 146633

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   ggacctttatctgtgttgct 581
             ||||||||||||||||||||
Sbjct: 29269 ggacctttatctgtgttgct 29250



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>emb|AL137010.4| Human DNA sequence from clone RP3-526L9 on chromosome 6 Contains a
             SWI/SNF related, matrix associated, actindependent
             regulator of chromatin, subfamily e, member 1 (SMARCE1)
             (BAF57) pseudogene and part of a novel gene, complete
             sequence
          Length = 29512

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tgacagtagtgtgtatacac 148
             ||||||||||||||||||||
Sbjct: 22236 tgacagtagtgtgtatacac 22217



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>emb|AJ720008.1| Gallus gallus mRNA for hypothetical protein, clone 9f22
          Length = 1860

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 360 gccgtcctgccgaccctccg 379
           ||||||||||||||||||||
Sbjct: 288 gccgtcctgccgaccctccg 269



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>ref|NM_001006332.1| Gallus gallus beclin 1 (coiled-coil, myosin-like BCL2 interacting
           protein) (BECN1), mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 360 gccgtcctgccgaccctccg 379
           ||||||||||||||||||||
Sbjct: 288 gccgtcctgccgaccctccg 269



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>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence
          Length = 79804

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   tcctctccatcaccctcctg 296
             ||||||||||||||||||||
Sbjct: 73211 tcctctccatcaccctcctg 73230



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>gb|AE005756.1| Caulobacter crescentus CB15 section 82 of 359 of the complete
           genome
          Length = 10951

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 392 cgggtcgcgggggtagtcgaacagcacc 419
           ||||||||||| ||||||| ||||||||
Sbjct: 866 cgggtcgcgggcgtagtcggacagcacc 839



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>gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208992

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    gtagtctgcttcttcaggaa 508
              ||||||||||||||||||||
Sbjct: 154755 gtagtctgcttcttcaggaa 154774



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>gb|AC159476.5| Mus musculus 10 BAC RP23-53O16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 212483

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    gtagtctgcttcttcaggaa 508
              ||||||||||||||||||||
Sbjct: 155104 gtagtctgcttcttcaggaa 155085



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>gb|AC068324.8|AC068324 Arabidopsis thaliana chromosome 1 BAC F13A11 genomic sequence, complete
             sequence
          Length = 95173

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     cttgcatttattttgaatgt 22
             ||||||||||||||||||||
Sbjct: 52715 cttgcatttattttgaatgt 52696



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>ref|XM_216112.3| PREDICTED: Rattus norvegicus transportin 3 (predicted)
            (Tnpo3_predicted), mRNA
          Length = 3505

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 499  tcttcaggaactccttcatg 518
            ||||||||||||||||||||
Sbjct: 1552 tcttcaggaactccttcatg 1533


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,204,627
Number of Sequences: 3902068
Number of extensions: 4204627
Number of successful extensions: 77066
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76896
Number of HSP's gapped (non-prelim): 170
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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