ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13e16 |
|---|---|
| Clone Library Name | barley_pub |
>FAAA_HUMAN (P16930) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate| hydrolase) (Beta-diketonase) (FAA) Length = 419 Score = 182 bits (462), Expect = 6e-46 Identities = 80/145 (55%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Frame = -2 Query: 588 FACEAPKQEPEPLPYLAEKDHINYDIPLEAWIKPKEQSDASIVTKTNFKHMYWTVTQQLA 409 FA PKQ+P PLPYL + +DI L +K + S A+ + K+NFK+MYWT+ QQL Sbjct: 272 FAVPNPKQDPRPLPYLCHDEPYTFDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLT 331 Query: 408 HHTVNGCNLRPGDMFATGTLSGPEPDSLGCLLEITWNGQKEISVGN-STRKFLQDGDEVI 232 HH+VNGCNLRPGD+ A+GT+SGPEP++ G +LE++W G K I +GN TRKFL DGDEVI Sbjct: 332 HHSVNGCNLRPGDLLASGTISGPEPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVI 391 Query: 231 LTACCKGEDYNVGFGTCTGKIVPSL 157 +T C+G+ Y +GFG C GK++P+L Sbjct: 392 ITGYCQGDGYRIGFGQCAGKVLPAL 416
>FAAA_RAT (P25093) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate| hydrolase) (Beta-diketonase) (FAA) Length = 419 Score = 176 bits (447), Expect = 3e-44 Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 1/145 (0%) Frame = -2 Query: 588 FACEAPKQEPEPLPYLAEKDHINYDIPLEAWIKPKEQSDASIVTKTNFKHMYWTVTQQLA 409 F PKQ+P+PLPYL +DI L +K + S A+ + ++NFKHMYWT+ QQL Sbjct: 272 FVVPNPKQDPKPLPYLCHSQPYTFDINLSVALKGEGMSQAATICRSNFKHMYWTILQQLT 331 Query: 408 HHTVNGCNLRPGDMFATGTLSGPEPDSLGCLLEITWNGQKEISVG-NSTRKFLQDGDEVI 232 HH+VNGCNLRPGD+ A+GT+SG +P+S G +LE++W G K I VG TR FL DGDEVI Sbjct: 332 HHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVI 391 Query: 231 LTACCKGEDYNVGFGTCTGKIVPSL 157 +T C+G+ Y VGFG C GK++P+L Sbjct: 392 ITGHCQGDGYRVGFGQCAGKVLPAL 416
>FAAA_MOUSE (P35505) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate| hydrolase) (Beta-diketonase) (FAA) Length = 419 Score = 176 bits (445), Expect = 6e-44 Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 1/145 (0%) Frame = -2 Query: 588 FACEAPKQEPEPLPYLAEKDHINYDIPLEAWIKPKEQSDASIVTKTNFKHMYWTVTQQLA 409 F PKQ+P+PLPYL +DI L +K + S A+ + ++NFKHMYWT+ QQL Sbjct: 272 FVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLT 331 Query: 408 HHTVNGCNLRPGDMFATGTLSGPEPDSLGCLLEITWNGQKEISVG-NSTRKFLQDGDEVI 232 HH+VNGCNLRPGD+ A+GT+SG +P+S G +LE++W G K I VG TR FL DGDEVI Sbjct: 332 HHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVI 391 Query: 231 LTACCKGEDYNVGFGTCTGKIVPSL 157 +T C+G+ Y VGFG C GK++P+L Sbjct: 392 ITGHCQGDGYRVGFGQCAGKVLPAL 416
>FAAA_EMENI (Q00770) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate| hydrolase) (Beta-diketonase) (FAA) Length = 431 Score = 101 bits (252), Expect = 1e-21 Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%) Frame = -2 Query: 573 PKQEPEPLPYLAEKD-HINYDIPLEAWIKPKEQSDASIVTKTNFKHMYWTVTQQLAHHTV 397 P LPYL EK YDIPLE + + ++++++N K++ ++ Q LAHHT+ Sbjct: 289 PGNRESLLPYLREKRADTAYDIPLEVEVT-NAGGEPTVISRSNAKNLLYSFPQMLAHHTI 347 Query: 396 NGCNLRPGDMFATGTLSGPEPDSLGCLLEITWNGQKEISVGN-STRKFLQDGDEVILTAC 220 GCNL GD+ +GT+SG E + G LE T NG+ I + + S R FL+DGD VIL Sbjct: 348 TGCNLNTGDLLGSGTISGKENQTEGSFLEQT-NGKNPIKLADGSERLFLEDGDTVILRGM 406 Query: 219 CKGEDYNVGFGTCTGKIVP 163 E VGFG C G I+P Sbjct: 407 AGTEGNYVGFGDCAGTILP 425
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 33.1 bits (74), Expect = 0.61 Identities = 23/81 (28%), Positives = 36/81 (44%) Frame = -2 Query: 576 APKQEPEPLPYLAEKDHINYDIPLEAWIKPKEQSDASIVTKTNFKHMYWTVTQQLAHHTV 397 +P++EP PLP L +PL + S+ + + T+ +H WT + Sbjct: 763 SPQEEPAPLPALP--------VPLP------DPSNEELQSSTSLEHRSWTAFSTSSSSP- 807 Query: 396 NGCNLRPGDMFATGTLSGPEP 334 G L PG+ F+ GT P P Sbjct: 808 -GTPLSPGNPFSPGTPISPGP 827
>LEUD_YERPS (Q66EM4) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 200 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 262 AGRIPN*YLLLPVPRYLQQASQRVRFRSTEGASRKHVPWS 381 AG++PN +L +PRY R G+SR+H PW+ Sbjct: 52 AGKVPNPDFVLNLPRYQGATILLARENFGCGSSREHAPWA 91
>LEUD_YERPE (Q8ZIH1) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 200 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 262 AGRIPN*YLLLPVPRYLQQASQRVRFRSTEGASRKHVPWS 381 AG++PN +L +PRY R G+SR+H PW+ Sbjct: 52 AGKVPNPDFVLNLPRYQGATILLARENFGCGSSREHAPWA 91
>RNS1A_RATEX (Q8VD93) Ribonuclease pancreatic alpha-type precursor (EC 3.1.27.5)| (RNase 1 gamma) Length = 149 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Frame = -1 Query: 472 RINCHKDQFQTYVLDC--DAATSTPHC*WMQSETRGHV---CDWHP 350 R NCHK ++ DC ++ P+C + ++++ H+ CD +P Sbjct: 94 RNNCHKSSSTLHITDCRLKGSSKYPNCDYTTTDSQKHIIIACDGNP 139
>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)| (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1) (ArgBP1) Length = 513 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +2 Query: 185 VPNPTL*SSPLQQAVKMTSSPSWRNLRVEFPTDISFCPFHVISSKHPKE-SGSGPLRVPV 361 VP+PT +P QQ+ T+S + RN + + S H S +E SGSG + VP+ Sbjct: 214 VPSPTRNMAPSQQSPVRTASVNQRNRT--YSSSGSSGGSHPSSRSSSRENSGSGSVGVPI 271 Query: 362 ANMSP 376 A +P Sbjct: 272 AVPTP 276
>LAML2_CAEEL (Q21313) Laminin-like protein K08C7.3 precursor| Length = 3672 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = -2 Query: 348 SGPEPDSLGCLLEITWNGQKEISVGNSTRKFLQDGDEVILTACCKGEDYNVGFGT 184 SG P +GC+ ++T NG K + NS K E+ L C +D N+ T Sbjct: 3200 SGETPSFVGCIGDVTLNG-KLLDFANSEIK------EISLNGCSLSDDENISTTT 3247
>ABI2_MOUSE (P62484) Abl interactor 2 (Abelson interactor 2) (Abi-2)| Length = 446 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +2 Query: 185 VPNPTL*SSPLQQAVKMTSSPSWRNLRVEFPTDISFCPFHVISSKHPKE-SGSGPLRVPV 361 VP+PT +P QQ+ T+S + RN + + S H S +E SGSG + VP+ Sbjct: 208 VPSPTRNMAPSQQSPVRTASVNQRNRT--YSSSGSSGGSHPSSRSSSRENSGSGSVGVPI 265 Query: 362 ANMSP 376 A +P Sbjct: 266 AVPTP 270
>PDIA4_HUMAN (P13667) Protein disulfide-isomerase A4 precursor (EC 5.3.4.1)| (Protein ERp-72) (ERp72) Length = 645 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -2 Query: 318 LLEITWNGQKEISVGNSTRKFLQDGDEVILTACCKGE 208 ++E + KEI ++FL+DGD+VI+ KGE Sbjct: 279 MIEQSGPPSKEILTLKQVQEFLKDGDDVIIIGVFKGE 315
>LEUD_VIBF1 (Q5E859) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 200 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +1 Query: 262 AGRIPN*YLLLPVPRYLQQASQRVRFRSTEGASRKHVPWS 381 AG PN ++ PRY R G+SR+H PWS Sbjct: 52 AGEQPNPEFVMNAPRYQGATVLLARENFGCGSSREHAPWS 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,221,632 Number of Sequences: 219361 Number of extensions: 1838408 Number of successful extensions: 5107 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5098 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
