| Clone Name | rbags13e14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473157.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 52.0 bits (26), Expect = 0.001 Identities = 40/45 (88%) Strand = Plus / Minus Query: 226 tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270 |||| |||||||| | |||||| ||| |||||||||||||||||| Sbjct: 1452 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 1408
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 52.0 bits (26), Expect = 0.001 Identities = 40/45 (88%) Strand = Plus / Plus Query: 226 tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270 |||| |||||||| | |||||| ||| |||||||||||||||||| Sbjct: 100224 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 100268
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.001 Identities = 40/45 (88%) Strand = Plus / Plus Query: 226 tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270 |||| |||||||| | |||||| ||| |||||||||||||||||| Sbjct: 25614026 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 25614070
>dbj|AK067841.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A11, full insert sequence Length = 1962 Score = 52.0 bits (26), Expect = 0.001 Identities = 40/45 (88%) Strand = Plus / Minus Query: 226 tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270 |||| |||||||| | |||||| ||| |||||||||||||||||| Sbjct: 1699 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 1655
>gb|AC102693.9| Mus musculus chromosome 6, clone RP24-127M20, complete sequence Length = 191955 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 cacataaagatgtcttgcaact 39 |||||||||||||||||||||| Sbjct: 9675 cacataaagatgtcttgcaact 9654
>gb|AC159305.3| Mus musculus BAC clone RP23-205D10 from chromosome 6, complete sequence Length = 209064 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 cacataaagatgtcttgcaact 39 |||||||||||||||||||||| Sbjct: 117454 cacataaagatgtcttgcaact 117433
>gb|AY137343.1| Mus musculus osteoclast inhibitory lectin related protein 2 (Ocilrp2) gene, complete cds, alternatively spliced Length = 9546 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 cacataaagatgtcttgcaact 39 |||||||||||||||||||||| Sbjct: 4246 cacataaagatgtcttgcaact 4267
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 aagaaccatcagtagctcaggaagt 135 ||||||||||| ||||||||||||| Sbjct: 189304 aagaaccatcattagctcaggaagt 189328
>gb|AF202180.3| Plasmodium falciparum erythrocyte membrane-associated giant protein antigen 332 gene, complete cds Length = 16377 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 aagaaccatcagtagctcaggaagt 135 ||||||||||| ||||||||||||| Sbjct: 3908 aagaaccatcattagctcaggaagt 3932
>emb|AL355501.26| Human DNA sequence from clone RP11-360P7 on chromosome 10 Contains the 5' end of the gene for a novel protein (FLJ32798), a zinc finger protein pseudogene and a CpG island, complete sequence Length = 179380 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gccatttataaaaacacata 23 |||||||||||||||||||| Sbjct: 127384 gccatttataaaaacacata 127403
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 acgattttacatgatattga 99 |||||||||||||||||||| Sbjct: 1052651 acgattttacatgatattga 1052670
>gb|AC015922.17| Homo sapiens chromosome 17, clone CTD-3157E16, complete sequence Length = 166584 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agagctgcagctgggatcca 160 |||||||||||||||||||| Sbjct: 151495 agagctgcagctgggatcca 151476
>gb|AC022021.10| Homo sapiens chromosome 10 clone RP11-351M16, complete sequence Length = 190202 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gccatttataaaaacacata 23 |||||||||||||||||||| Sbjct: 159091 gccatttataaaaacacata 159072
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaagcacggggagaagaacc 117 |||||||||||||||||||| Sbjct: 47093 gaagcacggggagaagaacc 47112
>gb|AY513738.1| Oreochromis mossambicus Na-K-Cl cotransporter (NKCC1beta) mRNA, complete cds Length = 4087 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 107 ggagaagaaccatcagtagctcaggaag 134 |||||||||||||||| |||| |||||| Sbjct: 721 ggagaagaaccatcagcagctgaggaag 748
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 catcagtagctcaggaagta 136 |||||||||||||||||||| Sbjct: 7255706 catcagtagctcaggaagta 7255725
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 catcagtagctcaggaagta 136 |||||||||||||||||||| Sbjct: 150354 catcagtagctcaggaagta 150373
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 catcagtagctcaggaagta 136 |||||||||||||||||||| Sbjct: 57136 catcagtagctcaggaagta 57155
>emb|AL354046.5|HS121M24 Homo sapiens chromosome 17 from PAC RPCI-1 121M24 map 17p11. region D17S842-D17S953, complete sequence Length = 185415 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 agagctgcagctgggatcca 160 |||||||||||||||||||| Sbjct: 67811 agagctgcagctgggatcca 67830
>gb|AC006251.3|AC006251 Homo sapiens chromosome 17, clone hRPK.692_E_18, complete sequence Length = 125099 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agagctgcagctgggatcca 160 |||||||||||||||||||| Sbjct: 22939 agagctgcagctgggatcca 22920
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttataaaaacacataaagat 28 |||||||||||||||||||| Sbjct: 288721 ttataaaaacacataaagat 288740
>emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chromosome X, complete sequence Length = 249536 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 catttataaaaacacataaa 25 |||||||||||||||||||| Sbjct: 238999 catttataaaaacacataaa 238980
>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12, complete sequence Length = 106763 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tataaaaacacataaagatg 29 |||||||||||||||||||| Sbjct: 51513 tataaaaacacataaagatg 51494 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,215,245 Number of Sequences: 3902068 Number of extensions: 2215245 Number of successful extensions: 41685 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41611 Number of HSP's gapped (non-prelim): 74 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)