ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13e14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473157.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
2emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 52 0.001
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AK067841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5gb|AC102693.9| Mus musculus chromosome 6, clone RP24-127M20, com... 44 0.24
6gb|AC159305.3| Mus musculus BAC clone RP23-205D10 from chromosom... 44 0.24
7gb|AY137343.1| Mus musculus osteoclast inhibitory lectin related... 44 0.24
8gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 42 0.95
9gb|AF202180.3| Plasmodium falciparum erythrocyte membrane-associ... 42 0.95
10emb|AL355501.26| Human DNA sequence from clone RP11-360P7 on chr... 40 3.7
11emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 3.7
12gb|AC015922.17| Homo sapiens chromosome 17, clone CTD-3157E16, c... 40 3.7
13gb|AC022021.10| Homo sapiens chromosome 10 clone RP11-351M16, co... 40 3.7
14gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 40 3.7
15gb|AY513738.1| Oreochromis mossambicus Na-K-Cl cotransporter (NK... 40 3.7
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
17dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
18dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
19emb|AL354046.5|HS121M24 Homo sapiens chromosome 17 from PAC RPC... 40 3.7
20gb|AC006251.3|AC006251 Homo sapiens chromosome 17, clone hRPK.69... 40 3.7
21gb|AE015927.1| Clostridium tetani E88, complete genome 40 3.7
22emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chro... 40 3.7
23dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 3.7

>ref|XM_473157.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 226  tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270
            |||| |||||||| | |||||| ||| ||||||||||||||||||
Sbjct: 1452 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 1408



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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
              complete sequence
          Length = 158601

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 226    tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270
              |||| |||||||| | |||||| ||| ||||||||||||||||||
Sbjct: 100224 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 100268



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 226      tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270
                |||| |||||||| | |||||| ||| ||||||||||||||||||
Sbjct: 25614026 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 25614070



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>dbj|AK067841.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A11, full
            insert sequence
          Length = 1962

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 226  tggcntcctcttctgcgtcttgaagtcgacatggtagagcccgaa 270
            |||| |||||||| | |||||| ||| ||||||||||||||||||
Sbjct: 1699 tggcgtcctcttcagtgtcttgtagtggacatggtagagcccgaa 1655



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>gb|AC102693.9| Mus musculus chromosome 6, clone RP24-127M20, complete sequence
          Length = 191955

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 18   cacataaagatgtcttgcaact 39
            ||||||||||||||||||||||
Sbjct: 9675 cacataaagatgtcttgcaact 9654



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>gb|AC159305.3| Mus musculus BAC clone RP23-205D10 from chromosome 6, complete sequence
          Length = 209064

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 18     cacataaagatgtcttgcaact 39
              ||||||||||||||||||||||
Sbjct: 117454 cacataaagatgtcttgcaact 117433



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>gb|AY137343.1| Mus musculus osteoclast inhibitory lectin related protein 2 (Ocilrp2)
            gene, complete cds, alternatively spliced
          Length = 9546

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 18   cacataaagatgtcttgcaact 39
            ||||||||||||||||||||||
Sbjct: 4246 cacataaagatgtcttgcaact 4267



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>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
              sequence
          Length = 271546

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 111    aagaaccatcagtagctcaggaagt 135
              ||||||||||| |||||||||||||
Sbjct: 189304 aagaaccatcattagctcaggaagt 189328



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>gb|AF202180.3| Plasmodium falciparum erythrocyte membrane-associated giant protein
            antigen 332 gene, complete cds
          Length = 16377

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 111  aagaaccatcagtagctcaggaagt 135
            ||||||||||| |||||||||||||
Sbjct: 3908 aagaaccatcattagctcaggaagt 3932



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>emb|AL355501.26| Human DNA sequence from clone RP11-360P7 on chromosome 10 Contains the 5'
              end of the gene for a novel protein (FLJ32798), a zinc
              finger protein pseudogene and a CpG island, complete
              sequence
          Length = 179380

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      gccatttataaaaacacata 23
              ||||||||||||||||||||
Sbjct: 127384 gccatttataaaaacacata 127403



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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 80      acgattttacatgatattga 99
               ||||||||||||||||||||
Sbjct: 1052651 acgattttacatgatattga 1052670



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>gb|AC015922.17| Homo sapiens chromosome 17, clone CTD-3157E16, complete sequence
          Length = 166584

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    agagctgcagctgggatcca 160
              ||||||||||||||||||||
Sbjct: 151495 agagctgcagctgggatcca 151476



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>gb|AC022021.10| Homo sapiens chromosome 10 clone RP11-351M16, complete sequence
          Length = 190202

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gccatttataaaaacacata 23
              ||||||||||||||||||||
Sbjct: 159091 gccatttataaaaacacata 159072



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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gaagcacggggagaagaacc 117
             ||||||||||||||||||||
Sbjct: 47093 gaagcacggggagaagaacc 47112



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>gb|AY513738.1| Oreochromis mossambicus Na-K-Cl cotransporter (NKCC1beta) mRNA,
           complete cds
          Length = 4087

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 107 ggagaagaaccatcagtagctcaggaag 134
           |||||||||||||||| |||| ||||||
Sbjct: 721 ggagaagaaccatcagcagctgaggaag 748



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     catcagtagctcaggaagta 136
               ||||||||||||||||||||
Sbjct: 7255706 catcagtagctcaggaagta 7255725



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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0485D09
          Length = 150594

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    catcagtagctcaggaagta 136
              ||||||||||||||||||||
Sbjct: 150354 catcagtagctcaggaagta 150373



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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   catcagtagctcaggaagta 136
             ||||||||||||||||||||
Sbjct: 57136 catcagtagctcaggaagta 57155



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>emb|AL354046.5|HS121M24 Homo sapiens chromosome 17 from PAC  RPCI-1 121M24 map 17p11. region
             D17S842-D17S953, complete sequence
          Length = 185415

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   agagctgcagctgggatcca 160
             ||||||||||||||||||||
Sbjct: 67811 agagctgcagctgggatcca 67830



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>gb|AC006251.3|AC006251 Homo sapiens chromosome 17, clone hRPK.692_E_18, complete sequence
          Length = 125099

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   agagctgcagctgggatcca 160
             ||||||||||||||||||||
Sbjct: 22939 agagctgcagctgggatcca 22920



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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      ttataaaaacacataaagat 28
              ||||||||||||||||||||
Sbjct: 288721 ttataaaaacacataaagat 288740



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>emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chromosome X, complete
              sequence
          Length = 249536

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      catttataaaaacacataaa 25
              ||||||||||||||||||||
Sbjct: 238999 catttataaaaacacataaa 238980



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>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12,
             complete sequence
          Length = 106763

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tataaaaacacataaagatg 29
             ||||||||||||||||||||
Sbjct: 51513 tataaaaacacataaagatg 51494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,215,245
Number of Sequences: 3902068
Number of extensions: 2215245
Number of successful extensions: 41685
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41611
Number of HSP's gapped (non-prelim): 74
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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