| Clone Name | rbags13e13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 79.8 bits (40), Expect = 7e-12 Identities = 133/163 (81%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 217 tttgaagaagagtatggcgtnccagaactcctccacgttgacgtttttctttcggcactc 276 ||||||||| |||||||| | |||||| ||||||||||| | |||||||| ||||| || Sbjct: 27764374 tttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcattc 27764315 Query: 277 ctcgaaggcttcacaccgtttcgactttgtgcgaaaacggagatgagcatatataccgtg 336 || || |||||||| | ||| ||| | || || || ||||||| ||| || ||||| | Sbjct: 27764314 ttcaaaagcttcacat-gcttcaactctatgtgagaatggagatgggcagatgtaccggg 27764256 Query: 337 ttgtgtcgatcgggtgagcttcgatctcgttgaaagataaatc 379 |||||||||| ||||||| | | ||||||||| |||||||||| Sbjct: 27764255 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatc 27764213
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 79.8 bits (40), Expect = 7e-12 Identities = 133/163 (81%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 217 tttgaagaagagtatggcgtnccagaactcctccacgttgacgtttttctttcggcactc 276 ||||||||| |||||||| | |||||| ||||||||||| | |||||||| ||||| || Sbjct: 113629 tttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcattc 113570 Query: 277 ctcgaaggcttcacaccgtttcgactttgtgcgaaaacggagatgagcatatataccgtg 336 || || |||||||| | ||| ||| | || || || ||||||| ||| || ||||| | Sbjct: 113569 ttcaaaagcttcacat-gcttcaactctatgtgagaatggagatgggcagatgtaccggg 113511 Query: 337 ttgtgtcgatcgggtgagcttcgatctcgttgaaagataaatc 379 |||||||||| ||||||| | | ||||||||| |||||||||| Sbjct: 113510 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatc 113468
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 79.8 bits (40), Expect = 7e-12 Identities = 133/163 (81%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 217 tttgaagaagagtatggcgtnccagaactcctccacgttgacgtttttctttcggcactc 276 ||||||||| |||||||| | |||||| ||||||||||| | |||||||| ||||| || Sbjct: 66883 tttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcattc 66824 Query: 277 ctcgaaggcttcacaccgtttcgactttgtgcgaaaacggagatgagcatatataccgtg 336 || || |||||||| | ||| ||| | || || || ||||||| ||| || ||||| | Sbjct: 66823 ttcaaaagcttcacat-gcttcaactctatgtgagaatggagatgggcagatgtaccggg 66765 Query: 337 ttgtgtcgatcgggtgagcttcgatctcgttgaaagataaatc 379 |||||||||| ||||||| | | ||||||||| |||||||||| Sbjct: 66764 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatc 66722
>dbj|AK102430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H13, full insert sequence Length = 2402 Score = 79.8 bits (40), Expect = 7e-12 Identities = 133/163 (81%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 217 tttgaagaagagtatggcgtnccagaactcctccacgttgacgtttttctttcggcactc 276 ||||||||| |||||||| | |||||| ||||||||||| | |||||||| ||||| || Sbjct: 2056 tttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcattc 1997 Query: 277 ctcgaaggcttcacaccgtttcgactttgtgcgaaaacggagatgagcatatataccgtg 336 || || |||||||| | ||| ||| | || || || ||||||| ||| || ||||| | Sbjct: 1996 ttcaaaagcttcacat-gcttcaactctatgtgagaatggagatgggcagatgtaccggg 1938 Query: 337 ttgtgtcgatcgggtgagcttcgatctcgttgaaagataaatc 379 |||||||||| ||||||| | | ||||||||| |||||||||| Sbjct: 1937 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatc 1895
>ref|XM_749409.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g11170) partial mRNA Length = 1944 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 gactttgtgcgaaaacggagatga 322 |||||||||| ||||||||||||| Sbjct: 875 gactttgtgccaaaacggagatga 898
>emb|AL035541.15|HS718J7 Human DNA sequence from clone RP4-718J7 on chromosome 20q13.31-13.33 Contains the PCK1 gene for soluble phosphoenolpyruvate carboxykinase 1, the ZBP1 gene for Z-DNA binding protein 1, the 3' end of the TMEPAI gene for transmembrane prostate androgen induced mRNA, two putative novel genes, the 5' end of the CTCFL gene for CCCTC-binding factor (zinc finger)-like and a CpG island, complete sequence Length = 130435 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cttcagagaagggctgagtg 140 |||||||||||||||||||| Sbjct: 19134 cttcagagaagggctgagtg 19115
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete sequence Length = 191676 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cttcagagaagggctgagtg 140 |||||||||||||||||||| Sbjct: 21159 cttcagagaagggctgagtg 21140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,975,783 Number of Sequences: 3902068 Number of extensions: 2975783 Number of successful extensions: 48110 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48077 Number of HSP's gapped (non-prelim): 33 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)