ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY701776.1| Triticum aestivum auxin amidohydrolase mRNA, comp... 543 e-151
2ref|NM_193506.1| Oryza sativa (japonica cultivar-group), predic... 240 5e-60
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 240 5e-60
4dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 240 5e-60
5dbj|AK105974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 5e-60
6dbj|AK059399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 5e-60
7gb|AY187620.1| Oryza sativa (indica cultivar-group) IAA-amino ac... 232 1e-57
8gb|BT018713.1| Zea mays clone EL01N0516G04.d mRNA sequence 74 7e-10
9gb|DQ420637.1| Acyrthosiphon pisum putative mitochondrial ATP sy... 44 0.60
10dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone... 44 0.60
11gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, co... 42 2.4
12gb|AC145877.3| Pan troglodytes BAC clone RP43-20I7 from 7, compl... 42 2.4
13emb|BX571836.25| Zebrafish DNA sequence from clone CH211-244M9 i... 42 2.4
14gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, compl... 42 2.4
15gb|AC087280.11| Homo sapiens chromosome 11, clone RP11-560B16, c... 42 2.4
16gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosom... 42 2.4
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
18gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M... 42 2.4
19dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
20dbj|AK107208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
21dbj|AP001675.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.4
22dbj|AP000433.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 42 2.4
23ref|NM_001036793.1| Arabidopsis thaliana MYB3R-4; DNA binding / ... 40 9.4
24ref|NM_121189.2| Arabidopsis thaliana MYB3R-4; DNA binding / tra... 40 9.4
25gb|AY519650.1| Arabidopsis thaliana MYB transcription factor (At... 40 9.4
26gb|AC073055.8| Homo sapiens BAC clone RP11-111J8 from 7, complet... 40 9.4
27emb|AL591034.5| Human DNA sequence from clone RP11-96J19 on chro... 40 9.4
28emb|AL136958.9| Human DNA sequence from clone RP11-147L20 on chr... 40 9.4
29emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, B... 40 9.4
30gb|AF371975.2|AF371975 Arabidopsis thaliana putative c-myb-like ... 40 9.4
31gb|AC152455.1| Pan troglodytes BAC clone RP43-4I15 from chromoso... 40 9.4
32dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 9.4 
>gb|AY701776.1| Triticum aestivum auxin amidohydrolase mRNA, complete cds
          Length = 1788

 Score =  543 bits (274), Expect = e-151
 Identities = 371/403 (92%), Gaps = 9/403 (2%)
 Strand = Plus / Minus

                                                                        
Query: 288  ctttttaatcaacagttgctgtgcacgtccct------ccgccgtttcattcaacatgga 341
            |||||||| ||||| ||||||||||||||| |      || |||||||||||||||||||
Sbjct: 1464 ctttttaaccaacaattgctgtgcacgtccttgtccttccaccgtttcattcaacatgga 1405

                                                                        
Query: 342  caccatctacagctcgtcccgtggttccaccaccttagcagcggtaacgagctggtgctc 401
            |||||||||||||||||| || |||||||||   |||||||||||| || ||||||||||
Sbjct: 1404 caccatctacagctcgtcgcgaggttccacc---ttagcagcggtagcgggctggtgctc 1348

                                                                        
Query: 402  aagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggcagtgtatcctc 461
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1347 aagcagatagcgagcagccaacgatgcttgcatggctgcaccgtagggcagtgcatcctc 1288

                                                                        
Query: 462  gttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtctcgttcagcat 521
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1287 gttgatggtgaagtagggggagtgatgaggcgcctgcggtccacgagtctcgttgagcat 1228

                                                                        
Query: 522  ccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggagaagtcctccgc 581
            |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct: 1227 ccccacaaagtagtagtatgtcttgggaacggcctcggtgtagaaggagaagtcctcggc 1168

                                                                        
Query: 582  acccatcagtggctgcttctctctcaccttgttggggccaaccatttcgctacccacctt 641
            ||||||||||||||||||||||||||| ||||||||||||||||| || || | ||||||
Sbjct: 1167 acccatcagtggctgcttctctctcacgttgttggggccaaccatctcactgcacacctt 1108

                                                       
Query: 642  cacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
            | |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1107 cgcaaagaaatcgtgaagctcaggattgttgattgttggaggg 1065



 Score =  149 bits (75), Expect = 1e-32
 Identities = 135/156 (86%), Gaps = 8/156 (5%)
 Strand = Plus / Minus

                                                                        
Query: 84   taagtgcagatacgaaaacaaacgagacctaccacagaatcacatgcgcacagtgttt-- 141
            ||||||||||| ||||||| ||||||||||||||||||| ||||||  | ||||| ||  
Sbjct: 1624 taagtgcagatgcgaaaacgaacgagacctaccacagaaacacatgttcgcagtgcttca 1565

                                                                        
Query: 142  ------tcacaaggtcatctgctcgcttgtaatgcactgaaatcaggaaaccatgtacag 195
                  ||||||||||||||||||||||| ||||| ||||||||||||||  ||||||| 
Sbjct: 1564 atgccgtcacaaggtcatctgctcgcttggaatgcgctgaaatcaggaaattatgtacaa 1505

                                                
Query: 196  acagttgcataatcacccggcgatacagaggtcctc 231
            ||||||||||||||||| ||||||||||||||||||
Sbjct: 1504 acagttgcataatcacctggcgatacagaggtcctc 1469
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>ref|NM_193506.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1329

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Minus

                                                                        
Query: 392  gctggtgctcaagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggca 451
            |||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||
Sbjct: 1288 gctggtgctcaagcagatagcgagcagctagtgatgcttgcaaggctgcaccgtagggca 1229

                                                                        
Query: 452  gtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtct 511
            | |  || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 1228 gggcgtcttcgttgatggtgaagtagggggagtggtgaggcgcctgcggtccgcgagtct 1169

                                                                        
Query: 512  cgttcagcatccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggaga 571
            ||||   ||| |||| |||||||||||| ||    ||||   | || | |||||||| ||
Sbjct: 1168 cgttgtacatgcccaggaagtagtagtaagttgcaggaatcgcatcagcgtagaaggcga 1109

                                                                        
Query: 572  agtcctccgcacccatcagtggctgcttctctctcaccttgttggggccaaccatttcgc 631
            ||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||
Sbjct: 1108 agtcctcggcacccatcagtggctgcttgtccctgacattcttggggccaaccatctcgc 1049

                                                                 
Query: 632  tacccaccttcacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
            || | |||||||||||||||||||| ||| | | | |||||||||||||||||
Sbjct: 1048 tagctaccttcacaaagaaatcgtggagccccgcgctgttgattgttggaggg 996
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Plus

                                                                            
Query: 392      gctggtgctcaagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggca 451
                |||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||
Sbjct: 21262173 gctggtgctcaagcagatagcgagcagctagtgatgcttgcaaggctgcaccgtagggca 21262232

                                                                            
Query: 452      gtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtct 511
                | |  || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 21262233 gggcgtcttcgttgatggtgaagtagggggagtggtgaggcgcctgcggtccgcgagtct 21262292

                                                                            
Query: 512      cgttcagcatccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggaga 571
                ||||   ||| |||| |||||||||||| ||    ||||   | || | |||||||| ||
Sbjct: 21262293 cgttgtacatgcccaggaagtagtagtaagttgcaggaatcgcatcagcgtagaaggcga 21262352

                                                                            
Query: 572      agtcctccgcacccatcagtggctgcttctctctcaccttgttggggccaaccatttcgc 631
                ||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||
Sbjct: 21262353 agtcctcggcacccatcagtggctgcttgtccctgacattcttggggccaaccatctcgc 21262412

                                                                     
Query: 632      tacccaccttcacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
                || | |||||||||||||||||||| ||| | | | |||||||||||||||||
Sbjct: 21262413 tagctaccttcacaaagaaatcgtggagccccgcgctgttgattgttggaggg 21262465
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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1064G04
          Length = 186704

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Plus

                                                                          
Query: 392    gctggtgctcaagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggca 451
              |||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||
Sbjct: 159682 gctggtgctcaagcagatagcgagcagctagtgatgcttgcaaggctgcaccgtagggca 159741

                                                                          
Query: 452    gtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtct 511
              | |  || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 159742 gggcgtcttcgttgatggtgaagtagggggagtggtgaggcgcctgcggtccgcgagtct 159801

                                                                          
Query: 512    cgttcagcatccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggaga 571
              ||||   ||| |||| |||||||||||| ||    ||||   | || | |||||||| ||
Sbjct: 159802 cgttgtacatgcccaggaagtagtagtaagttgcaggaatcgcatcagcgtagaaggcga 159861

                                                                          
Query: 572    agtcctccgcacccatcagtggctgcttctctctcaccttgttggggccaaccatttcgc 631
              ||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||
Sbjct: 159862 agtcctcggcacccatcagtggctgcttgtccctgacattcttggggccaaccatctcgc 159921

                                                                   
Query: 632    tacccaccttcacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
              || | |||||||||||||||||||| ||| | | | |||||||||||||||||
Sbjct: 159922 tagctaccttcacaaagaaatcgtggagccccgcgctgttgattgttggaggg 159974
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>dbj|AK105974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F05, full
            insert sequence
          Length = 1542

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Minus

                                                                        
Query: 392  gctggtgctcaagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggca 451
            |||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||
Sbjct: 1311 gctggtgctcaagcagatagcgagcagctagtgatgcttgcaaggctgcaccgtagggca 1252

                                                                        
Query: 452  gtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtct 511
            | |  || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 1251 gggcgtcttcgttgatggtgaagtagggggagtggtgaggcgcctgcggtccgcgagtct 1192

                                                                        
Query: 512  cgttcagcatccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggaga 571
            ||||   ||| |||| |||||||||||| ||    ||||   | || | |||||||| ||
Sbjct: 1191 cgttgtacatgcccaggaagtagtagtaagttgcaggaatcgcatcagcgtagaaggcga 1132

                                                                        
Query: 572  agtcctccgcacccatcagtggctgcttctctctcaccttgttggggccaaccatttcgc 631
            ||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||
Sbjct: 1131 agtcctcggcacccatcagtggctgcttgtccctgacattcttggggccaaccatctcgc 1072

                                                                 
Query: 632  tacccaccttcacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
            || | |||||||||||||||||||| ||| | | | |||||||||||||||||
Sbjct: 1071 tagctaccttcacaaagaaatcgtggagccccgcgctgttgattgttggaggg 1019
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>dbj|AK059399.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B02, full
           insert sequence
          Length = 1131

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Minus

                                                                       
Query: 392 gctggtgctcaagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggca 451
           |||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||
Sbjct: 880 gctggtgctcaagcagatagcgagcagctagtgatgcttgcaaggctgcaccgtagggca 821

                                                                       
Query: 452 gtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtct 511
           | |  || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 820 gggcgtcttcgttgatggtgaagtagggggagtggtgaggcgcctgcggtccgcgagtct 761

                                                                       
Query: 512 cgttcagcatccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggaga 571
           ||||   ||| |||| |||||||||||| ||    ||||   | || | |||||||| ||
Sbjct: 760 cgttgtacatgcccaggaagtagtagtaagttgcaggaatcgcatcagcgtagaaggcga 701

                                                                       
Query: 572 agtcctccgcacccatcagtggctgcttctctctcaccttgttggggccaaccatttcgc 631
           ||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||
Sbjct: 700 agtcctcggcacccatcagtggctgcttgtccctgacattcttggggccaaccatctcgc 641

                                                                
Query: 632 tacccaccttcacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
           || | |||||||||||||||||||| ||| | | | |||||||||||||||||
Sbjct: 640 tagctaccttcacaaagaaatcgtggagccccgcgctgttgattgttggaggg 588
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>gb|AY187620.1| Oryza sativa (indica cultivar-group) IAA-amino acid hydrolase (IAR)
            mRNA, complete cds
          Length = 1434

 Score =  232 bits (117), Expect = 1e-57
 Identities = 249/293 (84%)
 Strand = Plus / Minus

                                                                        
Query: 392  gctggtgctcaagcagatagcgagcagccaacgatgcttgcatggccgcaccgtagggca 451
            |||||||||||||||||||||||| ||| |  |||||||||| ||| |||||||||||||
Sbjct: 1360 gctggtgctcaagcagatagcgagtagctagtgatgcttgcaaggctgcaccgtagggca 1301

                                                                        
Query: 452  gtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgcctgcggtccacgagtct 511
            | |  || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 1300 gggcgtcttcgttgatggtgaagtagggggagtggtgaggcgcctgcggtccgcgagtct 1241

                                                                        
Query: 512  cgttcagcatccccacgaagtagtagtatgtcttgggaacgacctccgtgtagaaggaga 571
            ||||   ||| |||| |||||||||||| ||    ||||   | || | |||||||| ||
Sbjct: 1240 cgttgtacatgcccaggaagtagtagtaagttgcaggaatcgcatcagcgtagaaggcga 1181

                                                                        
Query: 572  agtcctccgcacccatcagtggctgcttctctctcaccttgttggggccaaccatttcgc 631
            ||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||
Sbjct: 1180 agtcctcggcacccatcagtggctgcttgtccctgacattcttggggccaaccatctcgc 1121

                                                                 
Query: 632  tacccaccttcacaaagaaatcgtgaagctcagggttgttgattgttggaggg 684
            || | |||||||||||||||||||| ||| | | | |||||||||||||||||
Sbjct: 1120 tagctaccttcacaaagaaatcgtggagccccgcgctgttgattgttggaggg 1068
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>gb|BT018713.1| Zea mays clone EL01N0516G04.d mRNA sequence
          Length = 1620

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 88/105 (83%)
 Strand = Plus / Minus

                                                                        
Query: 435  ggccgcaccgtagggcagtgtatcctcgttgatggtgaagtagggtgagtgatgaggcgc 494
            |||||| |||||||| || |  || ||||||| |||||||||||| ||||| || |||||
Sbjct: 1303 ggccgcgccgtaggggagggcgtcttcgttgacggtgaagtagggggagtggtggggcgc 1244

                                                         
Query: 495  ctgcggtccacgagtctcgttcagcatccccacgaagtagtagta 539
            |||||| || || ||||||||   ||| |||||||||||||||||
Sbjct: 1243 ctgcggcccgcgcgtctcgttgtacatgcccacgaagtagtagta 1199
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>gb|DQ420637.1| Acyrthosiphon pisum putative mitochondrial ATP synthase O subunit
           mRNA, complete cds; nuclear gene for mitochondrial
           product
          Length = 633

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   gcttccaatttattctgtttgc 30
           ||||||||||||||||||||||
Sbjct: 158 gcttccaatttattctgtttgc 137
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>dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT40O02, TM0111b,
             complete sequence
          Length = 92724

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 453   tgtatcctcgttgatggtgaag 474
             ||||||||||||||||||||||
Sbjct: 41088 tgtatcctcgttgatggtgaag 41067
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>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence
          Length = 255036

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 661   tcagggttgttgattgttgga 681
             |||||||||||||||||||||
Sbjct: 30436 tcagggttgttgattgttgga 30416
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>gb|AC145877.3| Pan troglodytes BAC clone RP43-20I7 from 7, complete sequence
          Length = 192794

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   aatcaggaaaccatgtacaga 196
             |||||||||||||||||||||
Sbjct: 98928 aatcaggaaaccatgtacaga 98908
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>emb|BX571836.25| Zebrafish DNA sequence from clone CH211-244M9 in linkage group 17,
             complete sequence
          Length = 178691

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 4     tgtctgcttccaatttattctgttt 28
             |||||||| ||||||||||||||||
Sbjct: 80018 tgtctgctcccaatttattctgttt 79994
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>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence
          Length = 170763

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 176   aatcaggaaaccatgtacaga 196
             |||||||||||||||||||||
Sbjct: 71869 aatcaggaaaccatgtacaga 71889
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>gb|AC087280.11| Homo sapiens chromosome 11, clone RP11-560B16, complete sequence
          Length = 173611

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 586    atcagtggctgcttctctctcacct 610
              |||||||||| ||||||||||||||
Sbjct: 141982 atcagtggcttcttctctctcacct 141958
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>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence
          Length = 180084

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 661   tcagggttgttgattgttgga 681
             |||||||||||||||||||||
Sbjct: 86283 tcagggttgttgattgttgga 86263
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 561      gtagaaggagaagtcctccgcacccatca 589
                |||||||||||||||||| || |||||||
Sbjct: 28448654 gtagaaggagaagtcctcggcgcccatca 28448682
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>gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M13, complete sequence
          Length = 186927

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 176    aatcaggaaaccatgtacaga 196
              |||||||||||||||||||||
Sbjct: 153472 aatcaggaaaccatgtacaga 153492
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>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0532H03
          Length = 166128

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 561   gtagaaggagaagtcctccgcacccatca 589
             |||||||||||||||||| || |||||||
Sbjct: 55687 gtagaaggagaagtcctcggcgcccatca 55715
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>dbj|AK107208.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B11, full
            insert sequence
          Length = 2043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 561  gtagaaggagaagtcctccgcacccatca 589
            |||||||||||||||||| || |||||||
Sbjct: 1383 gtagaaggagaagtcctcggcgcccatca 1355
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>dbj|AP001675.1| Homo sapiens genomic DNA, chromosome 21q, section 19/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 280    ttttccctctttttaatcaacagtt 304
              |||||| ||||||||||||||||||
Sbjct: 160961 ttttccttctttttaatcaacagtt 160985
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>dbj|AP000433.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B67B5,
             LL56-APP region, complete sequence
          Length = 57399

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 280   ttttccctctttttaatcaacagtt 304
             |||||| ||||||||||||||||||
Sbjct: 48018 ttttccttctttttaatcaacagtt 48042
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>ref|NM_001036793.1| Arabidopsis thaliana MYB3R-4; DNA binding / transcription factor
           AT5G11510 (MYB3R-4) transcript variant AT5G11510.2 mRNA,
           complete cds
          Length = 2397

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 404 gcagatagcgagcagccaacgatgcttg 431
           |||||||| ||||||||||| |||||||
Sbjct: 737 gcagatagtgagcagccaaccatgcttg 710
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>ref|NM_121189.2| Arabidopsis thaliana MYB3R-4; DNA binding / transcription factor
            AT5G11510 (MYB3R-4) transcript variant AT5G11510.1 mRNA,
            complete cds
          Length = 3403

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 404  gcagatagcgagcagccaacgatgcttg 431
            |||||||| ||||||||||| |||||||
Sbjct: 1064 gcagatagtgagcagccaaccatgcttg 1037
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>gb|AY519650.1| Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA,
           complete cds
          Length = 2886

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 404 gcagatagcgagcagccaacgatgcttg 431
           |||||||| ||||||||||| |||||||
Sbjct: 737 gcagatagtgagcagccaaccatgcttg 710
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>gb|AC073055.8| Homo sapiens BAC clone RP11-111J8 from 7, complete sequence
          Length = 87783

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   acatggacaccatctacagc 354
             ||||||||||||||||||||
Sbjct: 66198 acatggacaccatctacagc 66217
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>emb|AL591034.5| Human DNA sequence from clone RP11-96J19 on chromosome 6 Contains a 60S
             ribosomal protein L31 (RPL31) pseudogene, a replication
             protein A3 (RPA3) pseudogene and the gene for a novel
             protein, complete sequence
          Length = 94727

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 655   tgaagctcagggttgttgat 674
             ||||||||||||||||||||
Sbjct: 74098 tgaagctcagggttgttgat 74079
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>emb|AL136958.9| Human DNA sequence from clone RP11-147L20 on chromosome 13q14.11-14.2
             Contains the ESD gene for esterase D/formylglutathione
             hydrolase, the 3' end of the HTR2A gene for
             5-hydroxytryptamine (serotonin) receptor 2A, the 3' end of
             a variant of gene KIAA1016 and a CpG island, complete
             sequence
          Length = 106317

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   tgaaatcaggaaaccatgta 192
             ||||||||||||||||||||
Sbjct: 34038 tgaaatcaggaaaccatgta 34019
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>emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project)
          Length = 101665

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 404   gcagatagcgagcagccaacgatgcttg 431
             |||||||| ||||||||||| |||||||
Sbjct: 43779 gcagatagtgagcagccaaccatgcttg 43752
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>gb|AF371975.2|AF371975 Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4
            (MYB3R4) mRNA, complete cds
          Length = 3434

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 404  gcagatagcgagcagccaacgatgcttg 431
            |||||||| ||||||||||| |||||||
Sbjct: 1064 gcagatagtgagcagccaaccatgcttg 1037
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>gb|AC152455.1| Pan troglodytes BAC clone RP43-4I15 from chromosome 7, complete
             sequence
          Length = 136468

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   acatggacaccatctacagc 354
             ||||||||||||||||||||
Sbjct: 46865 acatggacaccatctacagc 46846
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 460     tcgttgatggtgaagtaggg 479
               ||||||||||||||||||||
Sbjct: 2116000 tcgttgatggtgaagtaggg 2115981


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,032,303
Number of Sequences: 3902068
Number of extensions: 5032303
Number of successful extensions: 86775
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86651
Number of HSP's gapped (non-prelim): 123
length of query: 684
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 661
effective length of database: 17,143,297,704
effective search space: 11331719782344
effective search space used: 11331719782344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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