>gb|AF479054.1| Triticum aestivum cytochrome reductase mRNA, partial cds
          Length = 348

 Score =  202 bits (102), Expect = 4e-49
 Identities = 139/151 (92%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                       
Query: 121 tcactcttggcagattatagaacatggaaattttcaactgctttgacattcaacaaagct 180
           ||||||||||| ||||||||||||||||||||  ||||||||||||||||  ||||||||
Sbjct: 348 tcactcttggcggattatagaacatggaaattc-caactgctttgacatttgacaaagct 290

                                                                       
Query: 181 tcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtactggta 240
           ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||  ||||
Sbjct: 289 tcacatctagtatctgtgggacagcntctcctgctccttgtagtacatcgcgtatgggta 230

                                          
Query: 241 ggtgccgacnacgggggtgatgaggagcgtg 271
           ||||||||| ||||||||||| |||||||||
Sbjct: 229 ggtgccgacgacgggggtgatnaggagcgtg 199

>dbj|AK120341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061B12, full
           insert sequence
          Length = 564

 Score =  117 bits (59), Expect = 2e-23
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 gcttcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtactg 237
           ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| 
Sbjct: 330 gcttcacatttagtatctgtgggatagcttctcctgctccttgtagtacattgcgtactc 271

                                             
Query: 238 gtaggtgccgacnacgggggtgatgaggagcgtg 271
           |||||||||||| | ||||| || ||||||||||
Sbjct: 270 gtaggtgccgacgatgggggcgaggaggagcgtg 237

>dbj|AK119716.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F09, full
           insert sequence
          Length = 552

 Score =  117 bits (59), Expect = 2e-23
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                       
Query: 178 gcttcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtactg 237
           ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| 
Sbjct: 329 gcttcacatttagtatctgtgggatagcttctcctgctccttgtagtacattgcgtactc 270

                                             
Query: 238 gtaggtgccgacnacgggggtgatgaggagcgtg 271
           |||||||||||| | ||||| || ||||||||||
Sbjct: 269 gtaggtgccgacgatgggggcgaggaggagcgtg 236

>gb|BT017053.1| Zea mays clone EL01N0354D06.c mRNA sequence
          Length = 530

 Score =  115 bits (58), Expect = 7e-23
 Identities = 75/81 (92%)
 Strand = Plus / Minus

                                                                       
Query: 191 tatctgtgggacagcttctcctgctccttgtattacatggcgtactggtaggtgccgacn 250
           ||||||||||| ||||||||||||||||||||  |||||||||| |||||||||||||| 
Sbjct: 293 tatctgtgggaaagcttctcctgctccttgtaccacatggcgtattggtaggtgccgacg 234

                                
Query: 251 acgggggtgatgaggagcgtg 271
           |||||||||| ||||||||||
Sbjct: 233 acgggggtgaggaggagcgtg 213

>gb|AY103678.1| Zea mays PCO101383 mRNA sequence
          Length = 637

 Score =  113 bits (57), Expect = 3e-22
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                       
Query: 188 tagtatctgtgggacagcttctcctgctccttgtattacatggcgtactggtaggtgccg 247
           |||||||||||||| |||||||||||||| |||||  |||||||||| ||||||||||||
Sbjct: 395 tagtatctgtgggaaagcttctcctgctctttgtaccacatggcgtattggtaggtgccg 336

                                   
Query: 248 acnacgggggtgatgaggagcgtg 271
           || |||||||||| ||||||||||
Sbjct: 335 acgacgggggtgaggaggagcgtg 312

>ref|NM_185695.1| Oryza sativa (japonica cultivar-group), Ozsa8046 predicted mRNA
          Length = 219

 Score =  105 bits (53), Expect = 7e-20
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                       
Query: 188 tagtatctgtgggacagcttctcctgctccttgtattacatggcgtactggtaggtgccg 247
           |||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct: 218 tagtatctgtgggatagcttctcctgctccttgtagtacattgcgtactcgtaggtgccg 159

                                   
Query: 248 acnacgggggtgatgaggagcgtg 271
           || | ||||| || ||||||||||
Sbjct: 158 acgatgggggcgaggaggagcgtg 135

>ref|NM_185685.1| Oryza sativa (japonica cultivar-group), Ozsa8036 predicted mRNA
          Length = 219

 Score =  105 bits (53), Expect = 7e-20
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                       
Query: 188 tagtatctgtgggacagcttctcctgctccttgtattacatggcgtactggtaggtgccg 247
           |||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct: 218 tagtatctgtgggatagcttctcctgctccttgtagtacattgcgtactcgtaggtgccg 159

                                   
Query: 248 acnacgggggtgatgaggagcgtg 271
           || | ||||| || ||||||||||
Sbjct: 158 acgatgggggcgaggaggagcgtg 135

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 178     gcttcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtac 235
               ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 3866968 gcttcacatttagtatctgtgggatagcttctcctgctccttgtagtacattgcgtac 3866911



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 178     gcttcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtac 235
               ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 3828912 gcttcacatttagtatctgtgggatagcttctcctgctccttgtagtacattgcgtac 3828855



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 229     ggcgtactggtaggtgccgacnacgggggtgatgaggagcgtg 271
               |||||||| |||||||||||| | ||||| || ||||||||||
Sbjct: 3865428 ggcgtactcgtaggtgccgacgatgggggcgaggaggagcgtg 3865386



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 229     ggcgtactggtaggtgccgacnacgggggtgatgaggagcgtg 271
               |||||||| |||||||||||| | ||||| || ||||||||||
Sbjct: 3827372 ggcgtactcgtaggtgccgacgatgggggcgaggaggagcgtg 3827330

>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                        
Query: 178    gcttcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtac 235
              ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 124922 gcttcacatttagtatctgtgggatagcttctcctgctccttgtagtacattgcgtac 124865



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 178   gcttcacatctagtatctgtgggacagcttctcctgctccttgtattacatggcgtac 235
             ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 86866 gcttcacatttagtatctgtgggatagcttctcctgctccttgtagtacattgcgtac 86809



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 229    ggcgtactggtaggtgccgacnacgggggtgatgaggagcgtg 271
              |||||||| |||||||||||| | ||||| || ||||||||||
Sbjct: 123382 ggcgtactcgtaggtgccgacgatgggggcgaggaggagcgtg 123340



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 229   ggcgtactggtaggtgccgacnacgggggtgatgaggagcgtg 271
             |||||||| |||||||||||| | ||||| || ||||||||||
Sbjct: 85326 ggcgtactcgtaggtgccgacgatgggggcgaggaggagcgtg 85284

>gb|AC104623.4| Homo sapiens BAC clone RP11-542H15 from 2, complete sequence
          Length = 102794

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 196  gtgggacagcttctcctgctccttgt 221
            |||||||||||| |||||||||||||
Sbjct: 4485 gtgggacagcttgtcctgctccttgt 4510

>gb|AC068276.7| Homo sapiens BAC clone RP11-127H13 from 2, complete sequence
          Length = 163719

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 58    tcattgcatatgcatggaaagaggaaaaga 87
             ||||||| | ||||||||||||||||||||
Sbjct: 63918 tcattgcttttgcatggaaagaggaaaaga 63889

>gb|AC010595.7| Homo sapiens chromosome 5 clone CTC-480C2, complete sequence
          Length = 179484

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   atagaacatggaaattttcaa 157
             |||||||||||||||||||||
Sbjct: 69153 atagaacatggaaattttcaa 69133

>emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-606A16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178062

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    ctaggaaatgattccaaaaat 114
             |||||||||||||||||||||
Sbjct: 57552 ctaggaaatgattccaaaaat 57532

>gb|DQ481664.1| Takifugu rubripes HoxAb gene cluster, complete sequence
          Length = 163052

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aaaatgttaaatcactcttg 129
             ||||||||||||||||||||
Sbjct: 92250 aaaatgttaaatcactcttg 92269

>gb|AC124419.4| Mus musculus BAC clone RP24-319P11 from chromosome 18, complete sequence
          Length = 140103

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    acatggaaattttcaactgctttg 165
              ||||| ||||||||||||||||||
Sbjct: 126337 acatgaaaattttcaactgctttg 126360

>gb|AC121608.3| Mus musculus BAC clone RP23-317M3 from chromosome 9, complete sequence
          Length = 207820

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aaaatgttaaatcactcttg 129
             ||||||||||||||||||||
Sbjct: 41640 aaaatgttaaatcactcttg 41621

>emb|AL359175.10| Human DNA sequence from clone RP11-213K14 on chromosome 10 Contains part
              of a variant of the NEBL gene for the nebulette protein
              (actin-binding Z-disc protein) and an eukaryotic
              translation initiation factor 4B (EIF4B)(EIF-4B)
              pseudogene, complete sequence
          Length = 155290

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     catggaaagaggaaaagagt 89
              ||||||||||||||||||||
Sbjct: 107021 catggaaagaggaaaagagt 107040

>emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 in linkage group 13,
              complete sequence
          Length = 186151

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     aaagaggaaaagagtacaac 94
              ||||||||||||||||||||
Sbjct: 126877 aaagaggaaaagagtacaac 126858

>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the 3'
              end of a novel gene and a CpG island, complete sequence
          Length = 189315

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     aaagtaagtttgcaagtcacactt 51
              |||||||||||| |||||||||||
Sbjct: 152373 aaagtaagtttgtaagtcacactt 152396

>emb|CR318673.9| Zebrafish DNA sequence from clone CH211-132J7 in linkage group 14,
             complete sequence
          Length = 164281

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   tttgacattcaacaaagctt 181
             ||||||||||||||||||||
Sbjct: 72357 tttgacattcaacaaagctt 72338

>emb|BX324158.13| Zebrafish DNA sequence from clone DKEY-148K19 in linkage group 14,
            complete sequence
          Length = 200794

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  tttgacattcaacaaagctt 181
            ||||||||||||||||||||
Sbjct: 5857 tttgacattcaacaaagctt 5838

>dbj|AB192511.1| Sus scrofa genomic DNA, chromosome 7, BAC clone: L014P15, complete
             sequence
          Length = 164132

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    agaggaaaagagtacaactaggaa 100
             ||||||||||||| ||||||||||
Sbjct: 52402 agaggaaaagagtccaactaggaa 52379

>gb|AC009258.3|AC009258 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR09F04, complete sequence
          Length = 176036

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   aatgattccaaaaatgttaa 119
             ||||||||||||||||||||
Sbjct: 63654 aatgattccaaaaatgttaa 63673

>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
              BACR02G22, complete sequence
          Length = 164982

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    aatgattccaaaaatgttaa 119
              ||||||||||||||||||||
Sbjct: 142492 aatgattccaaaaatgttaa 142511

>emb|BX005248.13| Zebrafish DNA sequence from clone CH211-155H12 in linkage group 8,
             complete sequence
          Length = 185135

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 89    tacaactaggaaatgattccaaaaatgttaaa 120
             |||||| |||||||||||  ||||||||||||
Sbjct: 21344 tacaacaaggaaatgatttaaaaaatgttaaa 21313

>gb|AC156272.6| Mus musculus 10 BAC RP24-244K5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 166962

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    cactcttggcagattataga 141
              ||||||||||||||||||||
Sbjct: 136630 cactcttggcagattataga 136611

>emb|BX284670.11| Zebrafish DNA sequence from clone CH211-264D7 in linkage group 18,
             complete sequence
          Length = 159822

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aaagaggaaaagagtacaac 94
             ||||||||||||||||||||
Sbjct: 37023 aaagaggaaaagagtacaac 37042

>gb|AY656934.1| Uncultured mycorrhizal fungus HYDNELL1 18S ribosomal RNA gene,
           partial sequence; internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence; and 28S ribosomal RNA gene, partial
           sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 147 gaaattttcaactgctttgacatt 170
           |||||| |||||||||||||||||
Sbjct: 397 gaaattatcaactgctttgacatt 420

>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the
             complete sequence
          Length = 306650

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   aatgattccaaaaatgttaa 119
             ||||||||||||||||||||
Sbjct: 69883 aatgattccaaaaatgttaa 69902

>emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, complete sequence
          Length = 242282

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   aacatggaaattttcaactg 160
             ||||||||||||||||||||
Sbjct: 21602 aacatggaaattttcaactg 21621

>emb|AL732433.7| Mouse DNA sequence from clone RP23-349N21 on chromosome X, complete
              sequence
          Length = 196655

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    tgattccaaaaatgttaaat 121
              ||||||||||||||||||||
Sbjct: 158764 tgattccaaaaatgttaaat 158745

>emb|AJ343664.1|HSA343664 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-CJ12C
          Length = 636

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 196 gtgggacagcttctcctgctcctt 219
           |||||||||||| |||||||||||
Sbjct: 446 gtgggacagcttgtcctgctcctt 469

>emb|AL672208.11| Mouse DNA sequence from clone RP23-318H23 on chromosome 9, complete
             sequence
          Length = 117535

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aaaatgttaaatcactcttg 129
             ||||||||||||||||||||
Sbjct: 41521 aaaatgttaaatcactcttg 41540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,951,463
Number of Sequences: 3902068
Number of extensions: 2951463
Number of successful extensions: 60876
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60791
Number of HSP's gapped (non-prelim): 84
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)