ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12p02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y07636.1|TAFKBP77 T.aestivum mRNA for peptidylprolyl isomerase Length = 1999 Score = 668 bits (337), Expect = 0.0 Identities = 411/435 (94%), Gaps = 3/435 (0%) Strand = Plus / Minus Query: 197 ccgtcacgcggtgctgtcgatggccataggctgtgcgtcctgctgcttcccggcggcatt 256 ||||||||||||||||||| ||||||||||||| || ||||||| |||||||||| || Sbjct: 1791 ccgtcacgcggtgctgtcgctggccataggctgcgcttcctgct---tcccggcggcgtt 1735 Query: 257 ctccgtcttcctccatttggcgaacatgttgccgtagaacttggcgtccctcttgttgta 316 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1734 ctccgtcttcctccatttggcgaacatgttgccgtagaacttggcatccctcttgttgta 1675 Query: 317 ctccctcagcttgtccttcaacgccttgtacgcaaccttgacctccctgttgtctggatc 376 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct: 1674 ctccctcagcttgtccttcaacgccttgtacgcaaccttcacctccctgttgtccgggtc 1615 Query: 377 gatctccagagccttcttgatatctagctctgccagctccagatccacgagttgggtgta 436 ||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||| Sbjct: 1614 gatctccagagccttcttgatatctagttctgccagttccagatccacgagctcggtgta 1555 Query: 437 cgcctgcgccctcctgtacagagccttgacgttcgtgctctccagctccaaaaccttggt 496 |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 1554 cgcctgcgccctccggtacagagccttgacgtttgtgctctccagctccaaaacctttga 1495 Query: 497 gcagagcttctctgcttctttgtaatccttgagtttcagtttgcacgctgcgttgttgag 556 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1494 gcagattttctctgcttctttgtaatccttgagtttcagtttgcacgctgcgttgttgag 1435 Query: 557 cttgatgctgatcttcactgccttggtttgcttcttctcatcctcgctgaaggagctgtc 616 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1434 cttgatgctgatcttcactgccttggattgcttcttctcatcctcgctgaaggagctgtc 1375 Query: 617 gtactcaatgtactt 631 ||||| |||||||| Sbjct: 1374 atactcgatgtactt 1360
>ref|XM_472023.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1758 Score = 246 bits (124), Expect = 7e-62 Identities = 310/372 (83%) Strand = Plus / Minus Query: 263 cttcctccatttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccct 322 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1683 cttcctccatttcgcgaacatgttgccgtagaacttggcgtctctcttgttgtactcctt 1624 Query: 323 cagcttgtccttcaacgccttgtacgcaaccttgacctccctgttgtctggatcgatctc 382 | ||| |||||||| | ||| ||| | | ||| || ||||||||||| ||||| ||||| Sbjct: 1623 gatcttctccttcaatgtcttatacaccatcttcacatccctgttgtcaggatcaatctc 1564 Query: 383 cagagccttcttgatatctagctctgccagctccagatccacgagttgggtgtacgcctg 442 ||| || ||||||| ||| | |||||| || |||||||| | || | |||| ||||| Sbjct: 1563 cagtgctttcttgacatccaactctgctagttccagatcagcaagctcaatgtatgcctg 1504 Query: 443 cgccctcctgtacagagccttgacgttcgtgctctccagctccaaaaccttggtgcagag 502 || ||| ||||||| ||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 1503 cgtccttctgtacaaggcctttacatttgtgctctccagttccaaaaccttggtgcagag 1444 Query: 503 cttctctgcttctttgtaatccttgagtttcagtttgcacgctgcgttgttgagcttgat 562 |||||||||||| |||| ||||| || ||||||||||| || || |||||||||||| Sbjct: 1443 cttctctgcttccctgtattccttcagcttcagtttgcaagcagcattgttgagcttgca 1384 Query: 563 gctgatcttcactgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactc 622 || | ||| | ||| || | ||||||||||||||| || ||||||||||||| ||||| Sbjct: 1383 actaaccttgagtgctttcgattgcttcttctcatcatcagtgaaggagctgtcatactc 1324 Query: 623 aatgtacttcgc 634 ||||||||||| Sbjct: 1323 gatgtacttcgc 1312 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 210 ctgtcgatggccataggctgtgcgtcctgct 240 ||||| ||||||||||||||||| ||||||| Sbjct: 1748 ctgtcaatggccataggctgtgcctcctgct 1718
>gb|AF140495.2| Oryza sativa (japonica cultivar-group) FK506-binding protein mRNA, complete cds Length = 2233 Score = 246 bits (124), Expect = 7e-62 Identities = 310/372 (83%) Strand = Plus / Minus Query: 263 cttcctccatttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccct 322 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1766 cttcctccatttcgcgaacatgttgccgtagaacttggcgtctctcttgttgtactcctt 1707 Query: 323 cagcttgtccttcaacgccttgtacgcaaccttgacctccctgttgtctggatcgatctc 382 | ||| |||||||| | ||| ||| | | ||| || ||||||||||| ||||| ||||| Sbjct: 1706 gatcttctccttcaatgtcttatacaccatcttcacatccctgttgtcaggatcaatctc 1647 Query: 383 cagagccttcttgatatctagctctgccagctccagatccacgagttgggtgtacgcctg 442 ||| || ||||||| ||| | |||||| || |||||||| | || | |||| ||||| Sbjct: 1646 cagtgctttcttgacatccaactctgctagttccagatcagcaagctcaatgtatgcctg 1587 Query: 443 cgccctcctgtacagagccttgacgttcgtgctctccagctccaaaaccttggtgcagag 502 || ||| ||||||| ||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 1586 cgtccttctgtacaaggcctttacatttgtgctctccagttccaaaaccttggtgcagag 1527 Query: 503 cttctctgcttctttgtaatccttgagtttcagtttgcacgctgcgttgttgagcttgat 562 |||||||||||| |||| ||||| || ||||||||||| || || |||||||||||| Sbjct: 1526 cttctctgcttccctgtattccttcagcttcagtttgcaagcagcattgttgagcttgca 1467 Query: 563 gctgatcttcactgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactc 622 || | ||| | ||| || | ||||||||||||||| || ||||||||||||| ||||| Sbjct: 1466 actaaccttgagtgctttcgattgcttcttctcatcatcagtgaaggagctgtcatactc 1407 Query: 623 aatgtacttcgc 634 ||||||||||| Sbjct: 1406 gatgtacttcgc 1395 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 210 ctgtcgatggccataggctgtgcgtcctgct 240 ||||| ||||||||||||||||| ||||||| Sbjct: 1831 ctgtcaatggccataggctgtgcctcctgct 1801
>dbj|AK100844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123G09, full insert sequence Length = 2162 Score = 246 bits (124), Expect = 7e-62 Identities = 310/372 (83%) Strand = Plus / Minus Query: 263 cttcctccatttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccct 322 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1769 cttcctccatttcgcgaacatgttgccgtagaacttggcgtctctcttgttgtactcctt 1710 Query: 323 cagcttgtccttcaacgccttgtacgcaaccttgacctccctgttgtctggatcgatctc 382 | ||| |||||||| | ||| ||| | | ||| || ||||||||||| ||||| ||||| Sbjct: 1709 gatcttctccttcaatgtcttatacaccatcttcacatccctgttgtcaggatcaatctc 1650 Query: 383 cagagccttcttgatatctagctctgccagctccagatccacgagttgggtgtacgcctg 442 ||| || ||||||| ||| | |||||| || |||||||| | || | |||| ||||| Sbjct: 1649 cagtgctttcttgacatccaactctgctagttccagatcagcaagctcaatgtatgcctg 1590 Query: 443 cgccctcctgtacagagccttgacgttcgtgctctccagctccaaaaccttggtgcagag 502 || ||| ||||||| ||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 1589 cgtccttctgtacaaggcctttacatttgtgctctccagttccaaaaccttggtgcagag 1530 Query: 503 cttctctgcttctttgtaatccttgagtttcagtttgcacgctgcgttgttgagcttgat 562 |||||||||||| |||| ||||| || ||||||||||| || || |||||||||||| Sbjct: 1529 cttctctgcttccctgtattccttcagcttcagtttgcaagcagcattgttgagcttgca 1470 Query: 563 gctgatcttcactgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactc 622 || | ||| | ||| || | ||||||||||||||| || ||||||||||||| ||||| Sbjct: 1469 actaaccttgagtgctttcgattgcttcttctcatcatcagtgaaggagctgtcatactc 1410 Query: 623 aatgtacttcgc 634 ||||||||||| Sbjct: 1409 gatgtacttcgc 1398 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 210 ctgtcgatggccataggctgtgcgtcctgct 240 ||||| ||||||||||||||||| ||||||| Sbjct: 1834 ctgtcaatggccataggctgtgcctcctgct 1804
>gb|AY104504.1| Zea mays PCO127462 mRNA sequence Length = 2108 Score = 172 bits (87), Expect = 9e-40 Identities = 291/359 (81%) Strand = Plus / Minus Query: 273 ttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccctcagcttgtcc 332 |||||||||||||||| |||||| ||||||||| |||||||||||||| | | ||| ||| Sbjct: 1792 ttggcgaacatgttgctgtagaatttggcgtccttcttgttgtactccttgatcttctcc 1733 Query: 333 ttcaacgccttgtacgcaaccttgacctccctgttgtctggatcgatctccagagccttc 392 |||| ||| || | | |||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 1732 ttcaggatcttatattccaacttgacatccctgttgtcaggatcgatttccagtgccttt 1673 Query: 393 ttgatatctagctctgccagctccagatccacgagttgggtgtacgcctgcgccctcctg 452 |||||||| |||||| ||||| || || | ||||| |||| || ||| |||||||| Sbjct: 1672 ttgatatcggcctctgctagctctaggtcagcaagttgaatgtaagcttgcaccctcctg 1613 Query: 453 tacagagccttgacgttcgtgctctccagctccaaaaccttggtgcagagcttctctgct 512 || ||||||||||| || ||| || || |||| |||||||||||| |||||| | ||| Sbjct: 1612 tagagagccttgacattttggctgtctagttccagaaccttggtgcaaagcttcgcagct 1553 Query: 513 tctttgtaatccttgagtttcagtttgcacgctgcgttgttgagcttgatgctgatcttc 572 || ||||||||||| | ||||||||||| || || | ||| || ||| |||||||||| Sbjct: 1552 tccttgtaatccttcaacttcagtttgcaggcagcatcgtttaggttgcagctgatcttc 1493 Query: 573 actgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactcaatgtactt 631 | | ||||| ||||||||||||||| || ||||| || ||||||||||||||||||| Sbjct: 1492 agttgcttggattgcttcttctcatcttcactgaacgaagtgtcgtactcaatgtactt 1434
>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07, complete sequence Length = 138383 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 489 accttggtgcagagcttctctgcttctttgtaatccttgagtttcagtttgcacgctgcg 548 |||||||||||||||||||||||||| |||| ||||| || ||||||||||| || || Sbjct: 75886 accttggtgcagagcttctctgcttccctgtattccttcagcttcagtttgcaagcagca 75945 Query: 549 ttgttgagcttgatgctgatcttcactgccttggtttgcttcttctcatcctcgctgaag 608 |||||||||||| || | ||| | ||| || | ||||||||||||||| || ||||| Sbjct: 75946 ttgttgagcttgcaactaaccttgagtgctttcgattgcttcttctcatcatcagtgaag 76005 Query: 609 gagctgtcgtactcaatgtacttcgc 634 |||||||| ||||| ||||||||||| Sbjct: 76006 gagctgtcatactcgatgtacttcgc 76031 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 263 cttcctccatttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccct 322 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 74997 cttcctccatttcgcgaacatgttgccgtagaacttggcgtctctcttgttgtactcctt 75056 Query: 323 cagcttgtccttcaa 337 | ||| |||||||| Sbjct: 75057 gatcttctccttcaa 75071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Plus Query: 362 cctgttgtctggatcgatctccagagccttcttgatatctagctctgccagctccagatc 421 ||||||||| ||||| |||||||| || ||||||| ||| | |||||| || |||||||| Sbjct: 75178 cctgttgtcaggatcaatctccagtgctttcttgacatccaactctgctagttccagatc 75237 Query: 422 cacgagttgggtgtacgcctgcgccctcctgtacagagccttgacgttcgtgctctccag 481 | || | |||| ||||||| ||| ||||||| ||||| || || ||||||||||| Sbjct: 75238 agcaagctcaatgtatgcctgcgtccttctgtacaaggcctttacatttgtgctctccag 75297 Query: 482 ctccaaaacct 492 |||||||||| Sbjct: 75298 ttccaaaacct 75308 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 210 ctgtcgatggccataggctgtgcgtcctgct 240 ||||| ||||||||||||||||| ||||||| Sbjct: 74835 ctgtcaatggccataggctgtgcctcctgct 74865
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 489 accttggtgcagagcttctctgcttctttgtaatccttgagtttcagtttgcacgctgcg 548 |||||||||||||||||||||||||| |||| ||||| || ||||||||||| || || Sbjct: 16825455 accttggtgcagagcttctctgcttccctgtattccttcagcttcagtttgcaagcagca 16825514 Query: 549 ttgttgagcttgatgctgatcttcactgccttggtttgcttcttctcatcctcgctgaag 608 |||||||||||| || | ||| | ||| || | ||||||||||||||| || ||||| Sbjct: 16825515 ttgttgagcttgcaactaaccttgagtgctttcgattgcttcttctcatcatcagtgaag 16825574 Query: 609 gagctgtcgtactcaatgtacttcgc 634 |||||||| ||||| ||||||||||| Sbjct: 16825575 gagctgtcatactcgatgtacttcgc 16825600 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 263 cttcctccatttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccct 322 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 16824566 cttcctccatttcgcgaacatgttgccgtagaacttggcgtctctcttgttgtactcctt 16824625 Query: 323 cagcttgtccttcaa 337 | ||| |||||||| Sbjct: 16824626 gatcttctccttcaa 16824640 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Plus Query: 362 cctgttgtctggatcgatctccagagccttcttgatatctagctctgccagctccagatc 421 ||||||||| ||||| |||||||| || ||||||| ||| | |||||| || |||||||| Sbjct: 16824747 cctgttgtcaggatcaatctccagtgctttcttgacatccaactctgctagttccagatc 16824806 Query: 422 cacgagttgggtgtacgcctgcgccctcctgtacagagccttgacgttcgtgctctccag 481 | || | |||| ||||||| ||| ||||||| ||||| || || ||||||||||| Sbjct: 16824807 agcaagctcaatgtatgcctgcgtccttctgtacaaggcctttacatttgtgctctccag 16824866 Query: 482 ctccaaaacct 492 |||||||||| Sbjct: 16824867 ttccaaaacct 16824877 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 210 ctgtcgatggccataggctgtgcgtcctgct 240 ||||| ||||||||||||||||| ||||||| Sbjct: 16824404 ctgtcaatggccataggctgtgcctcctgct 16824434
>ref|XM_483423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2100 Score = 75.8 bits (38), Expect = 2e-10 Identities = 275/354 (77%) Strand = Plus / Minus Query: 273 ttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccctcagcttgtcc 332 ||||||||||| |||| |||||| ||||| ||| |||||||||||||| | | ||| ||| Sbjct: 1765 ttggcgaacatattgctgtagaatttggcatccttcttgttgtactccttgaccttttcc 1706 Query: 333 ttcaacgccttgtacgcaaccttgacctccctgttgtctggatcgatctccagagccttc 392 || | |||||| | | ||| || |||||||| || ||||| || || || |||||| Sbjct: 1705 ttgaggttcttgtatgtcaacttcacatccctgttatcaggatcaatttcaagtgccttc 1646 Query: 393 ttgatatctagctctgccagctccagatccacgagttgggtgtacgcctgcgccctcctg 452 || ||||| | |||||| | ||| || || | ||||| |||| || || ||||||||| Sbjct: 1645 ttaatatccacctctgctaactctaggtcagcaagttgcatgtaagcttgggccctcctg 1586 Query: 453 tacagagccttgacgttcgtgctctccagctccaaaaccttggtgcagagcttctctgct 512 || | ||||||||| || ||| || || |||| |||||||||||| |||||||| ||| Sbjct: 1585 tataaagccttgacattttggctgtcaagttccagaaccttggtgcaaagcttctcagct 1526 Query: 513 tctttgtaatccttgagtttcagtttgcacgctgcgttgttgagcttgatgctgatcttc 572 | |||||||| || || ||||| ||||| || || ||||| | ||| | | | |||| Sbjct: 1525 tgcttgtaatctttcagcttcagcttgcaggcagcattgttcaagttgcaggtaaccttc 1466 Query: 573 actgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactcaatg 626 | | ||||| ||| ||||||||||| ||||| || |||||||| ||||||||| Sbjct: 1465 agttgcttggattgtttcttctcatcttcgctaaatgagctgtcatactcaatg 1412
>dbj|AK103172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121G16, full insert sequence Length = 2100 Score = 75.8 bits (38), Expect = 2e-10 Identities = 275/354 (77%) Strand = Plus / Minus Query: 273 ttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactccctcagcttgtcc 332 ||||||||||| |||| |||||| ||||| ||| |||||||||||||| | | ||| ||| Sbjct: 1765 ttggcgaacatattgctgtagaatttggcatccttcttgttgtactccttgaccttttcc 1706 Query: 333 ttcaacgccttgtacgcaaccttgacctccctgttgtctggatcgatctccagagccttc 392 || | |||||| | | ||| || |||||||| || ||||| || || || |||||| Sbjct: 1705 ttgaggttcttgtatgtcaacttcacatccctgttatcaggatcaatttcaagtgccttc 1646 Query: 393 ttgatatctagctctgccagctccagatccacgagttgggtgtacgcctgcgccctcctg 452 || ||||| | |||||| | ||| || || | ||||| |||| || || ||||||||| Sbjct: 1645 ttaatatccacctctgctaactctaggtcagcaagttgcatgtaagcttgggccctcctg 1586 Query: 453 tacagagccttgacgttcgtgctctccagctccaaaaccttggtgcagagcttctctgct 512 || | ||||||||| || ||| || || |||| |||||||||||| |||||||| ||| Sbjct: 1585 tataaagccttgacattttggctgtcaagttccagaaccttggtgcaaagcttctcagct 1526 Query: 513 tctttgtaatccttgagtttcagtttgcacgctgcgttgttgagcttgatgctgatcttc 572 | |||||||| || || ||||| ||||| || || ||||| | ||| | | | |||| Sbjct: 1525 tgcttgtaatctttcagcttcagcttgcaggcagcattgttcaagttgcaggtaaccttc 1466 Query: 573 actgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactcaatg 626 | | ||||| ||| ||||||||||| ||||| || |||||||| ||||||||| Sbjct: 1465 agttgcttggattgtttcttctcatcttcgctaaatgagctgtcatactcaatg 1412
>ref|NM_124233.2| Arabidopsis thaliana FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase AT5G48570 mRNA, complete cds Length = 2130 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Minus Query: 279 aacatgttgccgtagaacttggcgtccctcttgttgtactccctcagcttgtccttcaac 338 |||||||||| ||| ||||| || || ||||||| ||||| ||| ||| ||||||||| Sbjct: 1853 aacatgttgctgtaaaacttagcatctttcttgttatactctttcaccttctccttcaac 1794 Query: 339 gccttgtacgcaaccttgacctccctgttgtctggatcgatctccagagccttcttgata 398 ||| || | | ||| |||||| |||||||||||||||| || ||||| ||||||||| Sbjct: 1793 ttcttatattctatcttcacctccttgttgtctggatcgatttcgagagctttcttgata 1734 Query: 399 tctagctctgccagctccagatcc 422 || ||||| ||||| || |||||| Sbjct: 1733 tcaagctcagccagatcaagatcc 1710
>emb|BX831626.1|CNS0A0YB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1890 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Minus Query: 279 aacatgttgccgtagaacttggcgtccctcttgttgtactccctcagcttgtccttcaac 338 |||||||||| ||| ||||| || || ||||||| ||||| ||| ||| ||||||||| Sbjct: 1725 aacatgttgctgtaaaacttagcatctttcttgttatactctttcaccttctccttcaac 1666 Query: 339 gccttgtacgcaaccttgacctccctgttgtctggatcgatctccagagccttcttgata 398 ||| || | | ||| |||||| |||||||||||||||| || ||||| ||||||||| Sbjct: 1665 ttcttatattctatcttcacctccttgttgtctggatcgatttcgagagctttcttgata 1606 Query: 399 tctagctctgccagctccagatcc 422 || ||||| ||||| || |||||| Sbjct: 1605 tcaagctcagccagatcaagatcc 1582
>dbj|AB015468.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15N18 Length = 66084 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 364 tgttgtctggatcgatctccagagccttcttgatatctagctctgccagctccagatcc 422 |||||||||||||||| || ||||| ||||||||||| ||||| ||||| || |||||| Sbjct: 12197 tgttgtctggatcgatttcgagagctttcttgatatcaagctcagccagatcaagatcc 12255
>gb|AY389680.1| Hyacinthus orientalis peptidylprolyl isomerase (FKBP) mRNA, partial cds Length = 527 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 360 tccctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||| ||||| ||||| || || ||||||||||| |||||||||| Sbjct: 136 tccctgttgtcaggatcaatctcgagggctttcttgatatcgagctctgcca 85
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 273 ttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactcc 320 ||||||||||| |||| |||||| ||||| ||| |||||||||||||| Sbjct: 26135336 ttggcgaacatattgctgtagaatttggcatccttcttgttgtactcc 26135289 Score = 52.0 bits (26), Expect = 0.002 Identities = 110/138 (79%) Strand = Plus / Minus Query: 489 accttggtgcagagcttctctgcttctttgtaatccttgagtttcagtttgcacgctgcg 548 ||||||||||| |||||||| |||| |||||||| || || ||||| ||||| || || Sbjct: 26134947 accttggtgcaaagcttctcagcttgcttgtaatctttcagcttcagcttgcaggcagca 26134888 Query: 549 ttgttgagcttgatgctgatcttcactgccttggtttgcttcttctcatcctcgctgaag 608 ||||| | ||| | | | ||||| | ||||| ||| ||||||||||| ||||| || Sbjct: 26134887 ttgttcaagttgcaggtaaccttcagttgcttggattgtttcttctcatcttcgctaaat 26134828 Query: 609 gagctgtcgtactcaatg 626 |||||||| ||||||||| Sbjct: 26134827 gagctgtcatactcaatg 26134810
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 273 ttggcgaacatgttgccgtagaacttggcgtccctcttgttgtactcc 320 ||||||||||| |||| |||||| ||||| ||| |||||||||||||| Sbjct: 79267 ttggcgaacatattgctgtagaatttggcatccttcttgttgtactcc 79220 Score = 52.0 bits (26), Expect = 0.002 Identities = 110/138 (79%) Strand = Plus / Minus Query: 489 accttggtgcagagcttctctgcttctttgtaatccttgagtttcagtttgcacgctgcg 548 ||||||||||| |||||||| |||| |||||||| || || ||||| ||||| || || Sbjct: 78878 accttggtgcaaagcttctcagcttgcttgtaatctttcagcttcagcttgcaggcagca 78819 Query: 549 ttgttgagcttgatgctgatcttcactgccttggtttgcttcttctcatcctcgctgaag 608 ||||| | ||| | | | ||||| | ||||| ||| ||||||||||| ||||| || Sbjct: 78818 ttgttcaagttgcaggtaaccttcagttgcttggattgtttcttctcatcttcgctaaat 78759 Query: 609 gagctgtcgtactcaatg 626 |||||||| ||||||||| Sbjct: 78758 gagctgtcatactcaatg 78741
>ref|XM_465763.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2341 Score = 48.1 bits (24), Expect = 0.035 Identities = 45/52 (86%) Strand = Plus / Minus Query: 360 tccctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||||||||| || || || || ||||||||||| || ||||||| Sbjct: 1788 tccctgttgtctggatctatttctagtgctttcttgatatccagttctgcca 1737
>dbj|AK073233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H01, full insert sequence Length = 2341 Score = 48.1 bits (24), Expect = 0.035 Identities = 45/52 (86%) Strand = Plus / Minus Query: 360 tccctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||||||||| || || || || ||||||||||| || ||||||| Sbjct: 1788 tccctgttgtctggatctatttctagtgctttcttgatatccagttctgcca 1737
>gb|AY112186.1| Zea mays CL38095_1 mRNA sequence Length = 578 Score = 48.1 bits (24), Expect = 0.035 Identities = 45/52 (86%) Strand = Plus / Plus Query: 360 tccctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||| ||||| || || ||||| |||||||||||| |||||||| Sbjct: 506 tccctgttgtcaggatctatttctagagctttcttgatatctgcctctgcca 557
>ref|NM_113429.3| Arabidopsis thaliana ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase AT3G25230 (ROF1) mRNA, complete cds Length = 1974 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 584 ttgcttcttctcatcctcgctgaaggagctgtcgtactcaatg 626 |||||||||||| ||||| |||||||| ||||||| |||||| Sbjct: 1379 ttgcttcttctcttcctcactgaaggatgtgtcgtattcaatg 1337
>gb|BT012788.1| Lycopersicon esculentum clone 113780F, mRNA sequence Length = 2264 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 279 aacatgttgccgtagaacttggcgtccctcttgtt 313 |||||||| ||||||||||| |||||| ||||||| Sbjct: 1846 aacatgttcccgtagaactttgcgtccttcttgtt 1812 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 342 ttgtacgcaaccttgacctccctgttgtctggatcgatctccagagccttctt 394 |||||| ||| ||| || ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 1783 ttgtactcaagcttcacatccctgttgtcaggatcaatctcaagagctttctt 1731
>emb|X86903.1|TAFKBP70 T.aestivum mRNA for peptidylprolyl cis-trans isomerase, FK506 Length = 2027 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 565 tgatcttcactgccttggtttgcttcttctcatcctcgctgaaggagctgtcgtactcaa 624 ||||||||| | ||||| |||||| ||||||||||| ||||| || |||| ||||||| Sbjct: 1453 tgatcttcagttgcttggattgctttttctcatcctcactgaacgaagtgtcatactcaa 1394 Query: 625 tgtactt 631 || |||| Sbjct: 1393 tgaactt 1387
>dbj|AB026647.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJL12 Length = 81542 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 584 ttgcttcttctcatcctcgctgaaggagctgtcgtactcaatg 626 |||||||||||| ||||| |||||||| ||||||| |||||| Sbjct: 59408 ttgcttcttctcttcctcactgaaggatgtgtcgtattcaatg 59366
>gb|U57838.1|ATU57838 Arabidopsis thaliana FK506 binding protein FKBP62 (ROF1) gene, complete cds Length = 4029 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 584 ttgcttcttctcatcctcgctgaaggagctgtcgtactcaatg 626 |||||||||||| ||||| |||||||| ||||||| |||||| Sbjct: 2718 ttgcttcttctcttcctcactgaaggatgtgtcgtattcaatg 2676
>gb|AC132948.3| Mus musculus BAC clone RP24-467P6 from chromosome 8, complete sequence Length = 166801 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 tcgatctccagagccttcttga 396 |||||||||||||||||||||| Sbjct: 103607 tcgatctccagagccttcttga 103586
>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence Length = 212654 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 tcgatctccagagccttcttga 396 |||||||||||||||||||||| Sbjct: 167565 tcgatctccagagccttcttga 167544
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 362 cctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||||||| || || || || ||||||||||| || ||||||| Sbjct: 17257317 cctgttgtctggatctatttctagtgctttcttgatatccagttctgcca 17257366
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 362 cctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||||||| || || || || ||||||||||| || ||||||| Sbjct: 30000 cctgttgtctggatctatttctagtgctttcttgatatccagttctgcca 30049
>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0048K16 Length = 159891 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 362 cctgttgtctggatcgatctccagagccttcttgatatctagctctgcca 411 ||||||||||||||| || || || || ||||||||||| || ||||||| Sbjct: 128084 cctgttgtctggatctatttctagtgctttcttgatatccagttctgcca 128133
>emb|AL590423.14| Human DNA sequence from clone RP13-364K23 on chromosome Xq22.1-23 Contains the DSIPI gene for delta sleep inducing peptide, immunoreactor (DIP, GILZ, TSC-22R), the 5' end of a novel gene and two CpG islands, complete sequence Length = 83167 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 atcgatctccagagccttctt 394 ||||||||||||||||||||| Sbjct: 6736 atcgatctccagagccttctt 6716
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tgttgccgtagaacttggcgt 303 ||||||||||||||||||||| Sbjct: 4829504 tgttgccgtagaacttggcgt 4829484
>gb|U49453.1|ATU49453 Arabidopsis thaliana FK506 binding protein FKBP62 (ROF1) mRNA, complete cds Length = 1934 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 584 ttgcttcttctcatcctcgctgaaggagctgtcgtactcaa 624 |||||||||||| ||||| |||||||| ||||||| |||| Sbjct: 1330 ttgcttcttctcttcctcactgaaggatgtgtcgtattcaa 1290
>gb|AC124664.14| Mus musculus chromosome 1, clone RP23-103B18, complete sequence Length = 220456 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 gtttgcttcttctcatcctc 601 |||||||||||||||||||| Sbjct: 158416 gtttgcttcttctcatcctc 158435
>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence Length = 205300 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 gtttgcttcttctcatcctc 601 |||||||||||||||||||| Sbjct: 13948 gtttgcttcttctcatcctc 13967
>gb|AC091627.2| Solanum demissum chromosome 11 BAC PGEC513 genomic sequence, complete sequence Length = 77821 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ggcaccacaagcaggagcagcaga 105 |||||||||||||| ||||||||| Sbjct: 74033 ggcaccacaagcagcagcagcaga 74056
>ref|XM_414529.1| PREDICTED: Gallus gallus similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase) (LOC416204), mRNA Length = 2367 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 cttcttctcatcctcgctga 606 |||||||||||||||||||| Sbjct: 1122 cttcttctcatcctcgctga 1103
>gb|AC107794.13| Mus musculus chromosome 6, clone RP23-473P21, complete sequence Length = 183349 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 gagcttctctgcttctttgtaatc 523 ||||||| |||||||||||||||| Sbjct: 67676 gagcttcactgcttctttgtaatc 67699
>gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, complete sequence Length = 168319 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 ttctctgcttctttgtaatccttg 527 ||||||| |||||||||||||||| Sbjct: 149674 ttctctgattctttgtaatccttg 149697
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cacaagcaggagcagcagaa 106 |||||||||||||||||||| Sbjct: 91224 cacaagcaggagcagcagaa 91243
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gacgctgcagcgccgtcacg 204 |||||||||||||||||||| Sbjct: 4323738 gacgctgcagcgccgtcacg 4323757
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 tgtctggatcgatctccagagcct 390 ||||||||||||| |||||||||| Sbjct: 556810 tgtctggatcgatttccagagcct 556787
>ref|XM_552937.1| Anopheles gambiae str. PEST ENSANGP00000028215 (ENSANGG00000003992), partial mRNA Length = 2199 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 597 tcctcgctgaaggagctgtc 616 |||||||||||||||||||| Sbjct: 655 tcctcgctgaaggagctgtc 674
>ref|XM_319778.2| Anopheles gambiae str. PEST ENSANGP00000005177 (ENSANGG00000003992), partial mRNA Length = 3264 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 597 tcctcgctgaaggagctgtc 616 |||||||||||||||||||| Sbjct: 1348 tcctcgctgaaggagctgtc 1367
>ref|XM_308355.2| Anopheles gambiae str. PEST ENSANGP00000009410 (ENSANGG00000007043), partial mRNA Length = 6425 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 475 tctccagctccaaaaccttggtgc 498 ||||||||||||| |||||||||| Sbjct: 4495 tctccagctccaacaccttggtgc 4472
>gb|AC153875.3| Mus musculus 6 BAC RP23-218N14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187367 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 gagcttctctgcttctttgtaatc 523 ||||||| |||||||||||||||| Sbjct: 175352 gagcttcactgcttctttgtaatc 175375
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ccagctccagatccacgagt 428 |||||||||||||||||||| Sbjct: 4219653 ccagctccagatccacgagt 4219672
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cctgctgcttcccggcggca 254 |||||||||||||||||||| Sbjct: 1208413 cctgctgcttcccggcggca 1208394
>emb|AL732494.16| Mouse DNA sequence from clone RP23-322L22 on chromosome 4, complete sequence Length = 109450 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 gtttgcttcttctcatcctc 601 |||||||||||||||||||| Sbjct: 63666 gtttgcttcttctcatcctc 63685
>emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chromosome 14, complete sequence Length = 181740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcaaccttgacctccctgtt 367 |||||||||||||||||||| Sbjct: 104790 gcaaccttgacctccctgtt 104809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,673,326 Number of Sequences: 3902068 Number of extensions: 4673326 Number of successful extensions: 106782 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106431 Number of HSP's gapped (non-prelim): 346 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
