ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABP4_MAIZE (P33488) Auxin-binding protein 4 precursor (ABP) 87 1e-17
2ABP1_MAIZE (P13689) Auxin-binding protein 1 precursor (ABP) (ERA... 87 2e-17
3ABP1_TOBAC (P33490) Auxin-binding protein T85 precursor (ABP) 75 5e-14
4ABP2_TOBAC (P33491) Auxin-binding protein T92 precursor (ABP) 69 3e-12
5ABP1_ARATH (P33487) Auxin-binding protein 1 precursor (ABP) 57 1e-08
6ABP5_MAIZE (P33489) Auxin-binding protein 5 precursor (ABP) (ERA... 47 1e-05

>ABP4_MAIZE (P33488) Auxin-binding protein 4 precursor (ABP)|
          Length = 204

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 39/54 (72%), Positives = 45/54 (83%)
 Frame = -1

Query: 166 GTPQEIPVAQNSTFTVPVNDPXQVWXXDEHEDLXVLVIISRPPVXIFLYDXXSM 5
           G PQE+PV QN+TF++PVNDP QVW  +EHEDL VLVIISRPPV IF+YD  SM
Sbjct: 126 GQPQEVPVFQNTTFSIPVNDPHQVWNSNEHEDLQVLVIISRPPVKIFIYDDWSM 179



to top

>ABP1_MAIZE (P13689) Auxin-binding protein 1 precursor (ABP) (ERABP1)|
          Length = 201

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 40/54 (74%), Positives = 43/54 (79%)
 Frame = -1

Query: 166 GTPQEIPVAQNSTFTVPVNDPXQVWXXDEHEDLXVLVIISRPPVXIFLYDXXSM 5
           G PQEIP  QN+TF++PVNDP QVW  DEHEDL VLVIISRPP  IFLYD  SM
Sbjct: 123 GQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSM 176



to top

>ABP1_TOBAC (P33490) Auxin-binding protein T85 precursor (ABP)|
          Length = 187

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 34/54 (62%), Positives = 39/54 (72%)
 Frame = -1

Query: 166 GTPQEIPVAQNSTFTVPVNDPXQVWXXDEHEDLXVLVIISRPPVXIFLYDXXSM 5
           G PQE  +  NSTF +PVND  QVW   EHEDL VLV+ISRPPV +F+YD  SM
Sbjct: 107 GNPQEFHIFPNSTFHIPVNDVHQVWNTGEHEDLQVLVVISRPPVKVFMYDDWSM 160



to top

>ABP2_TOBAC (P33491) Auxin-binding protein T92 precursor (ABP)|
          Length = 187

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -1

Query: 166 GTPQEIPVAQNSTFTVPVNDPXQVWXXDEHEDLXVLVIISRPPVXIFLYDXXSM 5
           G PQE  +  NSTF +PVND  QVW   E EDL VL +ISRPPV +F+YD  SM
Sbjct: 107 GNPQEFHIFPNSTFHIPVNDVHQVWNTGEQEDLQVLDVISRPPVKVFMYDDWSM 160



to top

>ABP1_ARATH (P33487) Auxin-binding protein 1 precursor (ABP)|
          Length = 198

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 28/50 (56%), Positives = 34/50 (68%)
 Frame = -1

Query: 166 GTPQEIPVAQNSTFTVPVNDPXQVWXXDEHEDLXVLVIISRPPVXIFLYD 17
           G P E P+  NST  +P+ND  QV     HEDL VLVIISRPP+ IF+Y+
Sbjct: 120 GKPIEFPIFANSTIHIPINDAHQVKNTG-HEDLQVLVIISRPPIKIFIYE 168



to top

>ABP5_MAIZE (P33489) Auxin-binding protein 5 precursor (ABP) (ERABP5)|
           (Fragment)
          Length = 150

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = -1

Query: 166 GTPQEIPVAQNSTFTVPVNDPXQVW 92
           G PQE+PV QN+TF++PVNDP QVW
Sbjct: 126 GQPQEVPVFQNTTFSIPVNDPHQVW 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,924,553
Number of Sequences: 219361
Number of extensions: 174788
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top