ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY968674.1| Oryza sativa (japonica cultivar-group) auxin-bind... 143 2e-31
2dbj|AK111608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 2e-31
3dbj|AB000707.1| Avena sativa gene for auxin-binding protein, com... 125 4e-26
4gb|S66813.1| ZmERabp4=auxin-binding protein [Zea mays=corn, seed... 82 6e-13
5gb|AY109625.1| Zea mays CL1150_1 mRNA sequence 82 6e-13
6gb|S53630.1| Zea mays auxin-binding protein (ABP) mRNA, complete... 80 2e-12
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 80 2e-12
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 80 2e-12
9emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 80 2e-12
10gb|AY110975.1| Zea mays CL1150_2 mRNA sequence 74 1e-10
11emb|X16308.1|ZMABP1 Maize mRNA for auxin-binding protein (ABP) 72 6e-10
12emb|X16309.1|ZMABP Maize mRNA for putative auxin binding protein 72 6e-10
13gb|J04550.1|MZEAUX Maize auxin-binding protein (ABP) mRNA, compl... 72 6e-10
14gb|L08426.1|MZEABP4X Zea mays auxin-binding protein (abp4) gene,... 58 9e-06
15emb|X56737.1|ZMAUX311 Maize Aux311 gene for auxin-binding protein 50 0.002
16gb|L08425.1|MZEABP1X Zea mays auxin-binding protein (abp1) gene,... 50 0.002
17gb|AC117748.13| Mus musculus chromosome 5, clone RP24-317A24, co... 42 0.52
18gb|AC122231.2| Mus musculus BAC clone RP23-135M3 from 5, complet... 42 0.52
19gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, comp... 40 2.0
20ref|XM_721520.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 8.1
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
22dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
23dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
24gb|AY107948.1| Zea mays PCO068950 mRNA sequence 38 8.1 
>gb|AY968674.1| Oryza sativa (japonica cultivar-group) auxin-binding protein
           precursor, mRNA, partial cds
          Length = 627

 Score =  143 bits (72), Expect = 2e-31
 Identities = 118/136 (86%)
 Strand = Plus / Minus

                                                                       
Query: 26  aaatatnttnacaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatc 85
           |||||| || |||||||||||||| ||||||||||||||  ||||||| |||||||||||
Sbjct: 529 aaatatcttgacaggtgggcgcgaaatgatcacaagcacctgtaaatcctcatgttcatc 470

                                                                       
Query: 86  anaatnccaaacctgntntggatcattnacaggaactgtgaatgtgctattctgagcgac 145
           | ||| ||||||||| |  |||||||| |||||||| | ||||||||||||||    |||
Sbjct: 469 agaattccaaacctggtgcggatcatttacaggaacagagaatgtgctattcttgaagac 410

                           
Query: 146 aggaatctcctgaggc 161
           ||||||||||||||||
Sbjct: 409 aggaatctcctgaggc 394
to top
>dbj|AK111608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102J06, full
           insert sequence
          Length = 896

 Score =  143 bits (72), Expect = 2e-31
 Identities = 118/136 (86%)
 Strand = Plus / Minus

                                                                       
Query: 26  aaatatnttnacaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatc 85
           |||||| || |||||||||||||| ||||||||||||||  | ||||| |||||||||||
Sbjct: 538 aaatatcttgacaggtgggcgcgaaatgatcacaagcacctgcaaatcctcatgttcatc 479

                                                                       
Query: 86  anaatnccaaacctgntntggatcattnacaggaactgtgaatgtgctattctgagcgac 145
           | ||| ||||||||| |  |||||||| |||||||| | ||||||||||||||||  |||
Sbjct: 478 agaattccaaacctggtgcggatcatttacaggaacagagaatgtgctattctgaaagac 419

                           
Query: 146 aggaatctcctgaggc 161
            |||||||||||||||
Sbjct: 418 gggaatctcctgaggc 403
to top
>dbj|AB000707.1| Avena sativa gene for auxin-binding protein, complete cds
          Length = 801

 Score =  125 bits (63), Expect = 4e-26
 Identities = 131/157 (83%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcatgctncantcgtcatacagaaatatnttnacaggtgggcgcgatatgatcacaagca 63
           |||| || || ||||||||||||||||  || |||||||| | |||||||||||| || |
Sbjct: 614 gcatactccaatcgtcatacagaaatactttgacaggtggtctcgatatgatcactagaa 555

                                                                       
Query: 64  ctngtaaatcttcatgttcatcanaatnccaaacctgntntggatcattnacaggaactg 123
            | | | ||| |||||||||||| ||| ||||||||| | ||||||||| | |||||| |
Sbjct: 554 attggagatcctcatgttcatcagaattccaaacctggtgtggatcatttataggaaccg 495

                                                
Query: 124 tgaatgtgctattctgagcgacaggaatctcctgagg 160
           | |||||||||||||||| || ||||||||| |||||
Sbjct: 494 taaatgtgctattctgagagaaaggaatctcttgagg 458
to top
>gb|S66813.1| ZmERabp4=auxin-binding protein [Zea mays=corn, seedling, mRNA, 917
           nt]
          Length = 917

 Score = 81.8 bits (41), Expect = 6e-13
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 26  aaatatnttnacaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatc 85
           |||||| || || ||||||||||||||||||||||| ||| | |||||||| || |||| 
Sbjct: 585 aaatatcttgaccggtgggcgcgatatgatcacaagaacttgcaaatcttcgtgctcatt 526

                                            
Query: 86  anaatnccaaacctgntntggatcattnacagg 118
           | ||| ||| ||||| | ||||||||| |||||
Sbjct: 525 agaattccagacctgatgtggatcatttacagg 493
to top
>gb|AY109625.1| Zea mays CL1150_1 mRNA sequence
          Length = 939

 Score = 81.8 bits (41), Expect = 6e-13
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 26  aaatatnttnacaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatc 85
           |||||| || || ||||||||||||||||||||||| ||| | |||||||| || |||| 
Sbjct: 615 aaatatcttgaccggtgggcgcgatatgatcacaagaacttgcaaatcttcgtgctcatt 556

                                            
Query: 86  anaatnccaaacctgntntggatcattnacagg 118
           | ||| ||| ||||| | ||||||||| |||||
Sbjct: 555 agaattccagacctgatgtggatcatttacagg 523
to top
>gb|S53630.1| Zea mays auxin-binding protein (ABP) mRNA, complete cds
          Length = 795

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 123/154 (79%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcatgctncantcgtcatacagaaatatnttnacaggtgggcgcgatatgatcacaagca 63
           ||||||| || || ||||| | |||||| ||  |||| || | ||||||||||||||| |
Sbjct: 561 gcatgctccaatcatcatataaaaatatcttagcaggcggtctcgatatgatcacaagaa 502

                                                                       
Query: 64  ctngtaaatcttcatgttcatcanaatnccaaacctgntntggatcattnacaggaactg 123
           || | |||||||| || || ||| ||| ||||||||| | ||||||||| ||||| | ||
Sbjct: 501 cttgcaaatcttcgtgctcgtcagaattccaaacctggtgtggatcatttacagggattg 442

                                             
Query: 124 tgaatgtgctattctgagcgacaggaatctcctg 157
             |||||| ||||||||  || |||||| |||||
Sbjct: 441 aaaatgtggtattctgaaagaaaggaatttcctg 408
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 36       acaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaa 95
                |||||||||||||| ||||||||||||||  | ||||| |||||||||||| ||| ||||
Sbjct: 20906526 acaggtgggcgcgaaatgatcacaagcacctgcaaatcctcatgttcatcagaattccaa 20906467

                     
Query: 96       acctg 100
                |||||
Sbjct: 20906466 acctg 20906462



 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 105      ggatcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctgaggc 161
                |||||||| |||||||| | ||||||||||||||||  ||| |||||||||||||||
Sbjct: 20906277 ggatcatttacaggaacagagaatgtgctattctgaaagacgggaatctcctgaggc 20906221



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                           
Query: 42       gggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacctg 100
                ||||||||||||| |||||  ||  | ||||| ||||| |||||| ||| |||||||||
Sbjct: 20904510 gggcgcgatatgaccacaataacctgcaaatcctcatgctcatcagaattccaaacctg 20904452



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 105      ggatcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctgaggc 161
                |||||||| ||||| |  || |||||||| ||||||  |||||| ||||||||||||
Sbjct: 20904361 ggatcatttacagggatagtaaatgtgctgttctgaaagacagggatctcctgaggc 20904305
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 36       acaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaa 95
                |||||||||||||| ||||||||||||||  | ||||| |||||||||||| ||| ||||
Sbjct: 20832740 acaggtgggcgcgaaatgatcacaagcacctgcaaatcctcatgttcatcagaattccaa 20832681

                     
Query: 96       acctg 100
                |||||
Sbjct: 20832680 acctg 20832676



 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 105      ggatcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctgaggc 161
                |||||||| |||||||| | ||||||||||||||||  ||| |||||||||||||||
Sbjct: 20832491 ggatcatttacaggaacagagaatgtgctattctgaaagacgggaatctcctgaggc 20832435



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                           
Query: 42       gggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacctg 100
                ||||||||||||| |||||  ||  | ||||| ||||| |||||| ||| |||||||||
Sbjct: 20830724 gggcgcgatatgaccacaataacctgcaaatcctcatgctcatcagaattccaaacctg 20830666



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 105      ggatcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctgaggc 161
                |||||||| ||||| |  || |||||||| ||||||  |||||| ||||||||||||
Sbjct: 20830575 ggatcatttacagggatagtaaatgtgctgttctgaaagacagggatctcctgaggc 20830519
to top
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 36    acaggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaa 95
             |||||||||||||| ||||||||||||||  | ||||| |||||||||||| ||| ||||
Sbjct: 52469 acaggtgggcgcgaaatgatcacaagcacctgcaaatcctcatgttcatcagaattccaa 52528

                  
Query: 96    acctg 100
             |||||
Sbjct: 52529 acctg 52533



 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                      
Query: 105   ggatcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctgaggc 161
             |||||||| |||||||| | ||||||||||||||||  ||| |||||||||||||||
Sbjct: 52718 ggatcatttacaggaacagagaatgtgctattctgaaagacgggaatctcctgaggc 52774



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 105   ggatcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctgaggc 161
             |||||||| ||||| |  || |||||||| ||||||  |||||| ||||||||||||
Sbjct: 54634 ggatcatttacagggatagtaaatgtgctgttctgaaagacagggatctcctgaggc 54690



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 49/59 (83%)
 Strand = Plus / Plus

                                                                        
Query: 42    gggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacctg 100
             ||||||||||||| |||||  ||  | ||||| ||||| |||||| ||| |||||||||
Sbjct: 54485 gggcgcgatatgaccacaataacctgcaaatcctcatgctcatcagaattccaaacctg 54543
to top
>gb|AY110975.1| Zea mays CL1150_2 mRNA sequence
          Length = 1088

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 47  cgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacctgntntgg 106
           ||||||||||||||| ||| | |||||||| || || ||| ||| ||||||||| | |||
Sbjct: 807 cgatatgatcacaagaacttgcaaatcttcgtgctcgtcagaattccaaacctggtgtgg 748

                                                              
Query: 107 atcattnacaggaactgtgaatgtgctattctgagcgacaggaatctcctg 157
           |||||| ||||| | ||  |||||| ||||||||  || |||||| |||||
Sbjct: 747 atcatttacagggattgaaaatgtggtattctgaaagaaaggaatttcctg 697
to top
>emb|X16308.1|ZMABP1 Maize mRNA for auxin-binding protein (ABP)
          Length = 770

 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 122/154 (79%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcatgctncantcgtcatacagaaatatnttnacaggtgggcgcgatatgatcacaagca 63
           ||||||| || || ||||| | |||||| ||  ||||||| | ||| ||||||||||| |
Sbjct: 543 gcatgctccaatcatcatataaaaatatcttagcaggtggtctcgaaatgatcacaagaa 484

                                                                       
Query: 64  ctngtaaatcttcatgttcatcanaatnccaaacctgntntggatcattnacaggaactg 123
           || | |||||||| || || ||| ||| ||||||||| | |||||| || ||||| | ||
Sbjct: 483 cttgcaaatcttcgtgctcgtcagaattccaaacctggtgtggatcgtttacagggattg 424

                                             
Query: 124 tgaatgtgctattctgagcgacaggaatctcctg 157
             |||||| ||||||||  || |||||| |||||
Sbjct: 423 aaaatgtggtattctgaaagaaaggaatttcctg 390
to top
>emb|X16309.1|ZMABP Maize mRNA for putative auxin binding protein
          Length = 791

 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 122/154 (79%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcatgctncantcgtcatacagaaatatnttnacaggtgggcgcgatatgatcacaagca 63
           ||||||| || || ||||| | |||||| ||  ||||||| | ||| ||||||||||| |
Sbjct: 563 gcatgctccaatcatcatataaaaatatcttagcaggtggtctcgaaatgatcacaagaa 504

                                                                       
Query: 64  ctngtaaatcttcatgttcatcanaatnccaaacctgntntggatcattnacaggaactg 123
           || | |||||||| || || ||| ||| ||||||||| | |||||| || ||||| | ||
Sbjct: 503 cttgcaaatcttcgtgctcgtcagaattccaaacctggtgtggatcgtttacagggattg 444

                                             
Query: 124 tgaatgtgctattctgagcgacaggaatctcctg 157
             |||||| ||||||||  || |||||| |||||
Sbjct: 443 aaaatgtggtattctgaaagaaaggaatttcctg 410
to top
>gb|J04550.1|MZEAUX Maize auxin-binding protein (ABP) mRNA, complete cds
          Length = 812

 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 122/154 (79%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcatgctncantcgtcatacagaaatatnttnacaggtgggcgcgatatgatcacaagca 63
           ||||||| || || ||||| | |||||| ||  |||| || | ||||||||||||||| |
Sbjct: 575 gcatgctccaatcatcatataaaaatatcttagcaggcggtctcgatatgatcacaagaa 516

                                                                       
Query: 64  ctngtaaatcttcatgttcatcanaatnccaaacctgntntggatcattnacaggaactg 123
           || | |||||||| || || ||| ||| ||||||||| | ||||||| | ||||| | ||
Sbjct: 515 cttgcaaatcttcgtgctcgtcagaattccaaacctggtgtggatcacttacagggattg 456

                                             
Query: 124 tgaatgtgctattctgagcgacaggaatctcctg 157
             |||||| ||||||||  || |||||| |||||
Sbjct: 455 aaaatgtggtattctgaaagaaaggaatttcctg 422
to top
>gb|L08426.1|MZEABP4X Zea mays auxin-binding protein (abp4) gene, exons 1-5 and complete
            cds
          Length = 5574

 Score = 58.0 bits (29), Expect = 9e-06
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 39   ggtgggcgcgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacc 98
            ||||||||||||||||||||||| ||| | |||||||| || |||| | ||| ||| |||
Sbjct: 3940 ggtgggcgcgatatgatcacaagaacttgcaaatcttcgtgctcattagaattccagacc 3881

              
Query: 99   tg 100
            ||
Sbjct: 3880 tg 3879
to top
>emb|X56737.1|ZMAUX311 Maize Aux311 gene for auxin-binding protein
          Length = 5337

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 47   cgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacctg 100
            ||||||||||||||| ||| | |||||||| || || ||| ||| |||||||||
Sbjct: 3492 cgatatgatcacaagaacttgcaaatcttcgtgctcgtcagaattccaaacctg 3439
to top
>gb|L08425.1|MZEABP1X Zea mays auxin-binding protein (abp1) gene, exons 1-5 and complete
            cds
          Length = 5574

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 47   cgatatgatcacaagcactngtaaatcttcatgttcatcanaatnccaaacctg 100
            ||||||||||||||| ||| | |||||||| || || ||| ||| |||||||||
Sbjct: 3846 cgatatgatcacaagaacttgcaaatcttcgtgctcgtcagaattccaaacctg 3793
to top
>gb|AC117748.13| Mus musculus chromosome 5, clone RP24-317A24, complete sequence
          Length = 180438

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    aggaactgtgaatgtgctatt 136
              |||||||||||||||||||||
Sbjct: 151400 aggaactgtgaatgtgctatt 151380
to top
>gb|AC122231.2| Mus musculus BAC clone RP23-135M3 from 5, complete sequence
          Length = 172949

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    aggaactgtgaatgtgctatt 136
              |||||||||||||||||||||
Sbjct: 166267 aggaactgtgaatgtgctatt 166287
to top
>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence
          Length = 155472

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    caggaactgtgaatgtgctattct 138
              ||||||||||||||||||| ||||
Sbjct: 115638 caggaactgtgaatgtgctcttct 115661
to top
>ref|XM_721520.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein
          (PY06033) partial mRNA
          Length = 84

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 68 taaatcttcatgttcatca 86
          |||||||||||||||||||
Sbjct: 20 taaatcttcatgttcatca 2
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 124     tgaatgtgctattctgagc 142
               |||||||||||||||||||
Sbjct: 4451721 tgaatgtgctattctgagc 4451703
to top
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 124   tgaatgtgctattctgagc 142
             |||||||||||||||||||
Sbjct: 98897 tgaatgtgctattctgagc 98879
to top
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0583B06
          Length = 134442

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 124   tgaatgtgctattctgagc 142
             |||||||||||||||||||
Sbjct: 17611 tgaatgtgctattctgagc 17593
to top
>gb|AY107948.1| Zea mays PCO068950 mRNA sequence
          Length = 554

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                        
Query: 47 cgatatgatcacaagcactngtaaatcttc 76
          ||||||||||||||| ||| | ||||||||
Sbjct: 31 cgatatgatcacaagaacttgcaaatcttc 60


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 649,560
Number of Sequences: 3902068
Number of extensions: 649560
Number of successful extensions: 38573
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38520
Number of HSP's gapped (non-prelim): 52
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top