ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13e03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 912 bits (460), Expect = 0.0 Identities = 478/484 (98%) Strand = Plus / Plus Query: 10 ttaattctttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaa 69 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77000 ttaattctttgatctcaatttcgcctactagtatttataatacttcaggagctaatgaaa 77059 Query: 70 ctattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttc 129 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 77060 ctattttggtaaaattcaatcctctcaattcctcggcaatcgcgccaaaaactcgagttc 77119 Query: 130 cttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattatta 189 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77120 cttttggattgcctttttgatcaattataaccgcagcattgtcatcatagcggattatta 77179 Query: 190 taccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcgg 249 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 77180 taccgtcttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcgg 77239 Query: 250 atctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaa 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77240 atctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaa 77299 Query: 310 tacgagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgag 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77300 tacgagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgag 77359 Query: 370 ctccactattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttc 429 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77360 ctccactattatcggctacatttaaaagggtctgaggttgaatcatattattttgatttc 77419 Query: 430 aatttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaaccg 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77420 aatttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaaccg 77479 Query: 490 ggca 493 |||| Sbjct: 77480 ggca 77483 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Plus Query: 502 cttccataccccttttagggttctatatctctaatcgaata 542 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaata 77536
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 690 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 689 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 630 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 629 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 570 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 510 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 450 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 390 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 330 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 329 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 278
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1491 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1432 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1431 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1372 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1371 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1312 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1252 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 1192 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1191 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 1132 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1131 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 1072 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1071 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 1020
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1491 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1432 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1431 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1372 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1371 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1312 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1252 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 1192 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1191 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 1132 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1131 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 1072 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1071 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 1020
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77234 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 77293 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 77294 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 77353 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 77354 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 77413 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77414 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 77473 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77474 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 77533 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77534 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 77593 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77594 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 77653 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77654 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 77705
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77234 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 77293 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 77294 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 77353 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 77354 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 77413 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77414 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 77473 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77474 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 77533 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77534 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 77593 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77594 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 77653 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77654 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 77705
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77175 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 77234 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 77235 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 77294 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 77295 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 77354 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77355 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 77414 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77415 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 77474 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77475 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 77534 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77535 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 77594 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77595 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 77646
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53245 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 53304 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 53305 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 53364 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 53365 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 53424 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53425 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 53484 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 53485 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 53544 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53545 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 53604 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53605 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 53664 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 53665 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 53716
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126073 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 126132 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 126133 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 126192 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 126193 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 126252 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126253 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 126312 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 126313 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 126372 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126373 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 126432 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126433 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 126492 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 126493 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 126544
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77221 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 77280 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 77281 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 77340 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 77341 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 77400 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77401 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 77460 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77461 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 77520 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77521 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 77580 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77581 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 77640 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77641 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 77692
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73559 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 73500 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 73499 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 73440 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 73439 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 73380 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73379 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 73320 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 73319 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 73260 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73259 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 73200 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73199 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 73140 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 73139 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 73088
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75422 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 75481 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 75482 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 75541 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 75542 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 75601 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75602 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 75661 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 75662 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 75721 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75722 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 75781 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75782 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 75841 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 75842 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 75893
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9486 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 9545 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 9546 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 9605 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 9606 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 9665 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9666 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 9725 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 9726 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 9785 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9786 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 9845 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9846 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 9905 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9906 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 9957
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192486 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 9192427 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 9192426 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 9192367 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 9192366 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 9192307 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192306 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 9192247 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192246 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 9192187 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192186 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 9192127 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192126 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 9192067 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9192066 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 9192015 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115533 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 9115474 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 9115473 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 9115414 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 9115413 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 9115354 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115353 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 9115294 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115293 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 9115234 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115233 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 9115174 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115173 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 9115114 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9115113 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 9115062 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 220 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 270 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 3e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 211 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 266 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 267 tggggcaatgcgtctttgattaca 290 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369030 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 10369089 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 10369090 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 10369149 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 10369150 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 10369209 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369210 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 10369269 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369270 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 10369329 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369330 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 10369389 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369390 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 10369449 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 10369450 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 203 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 258 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 259 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 318 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 319 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 363 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259828 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 9259769 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 9259768 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 9259709 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 9259708 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 9259649 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259648 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 9259589 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259588 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 9259529 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259528 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 9259469 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259468 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 9259409 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9259408 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 143 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 202 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 203 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 262 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 263 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 312 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 186 bits (94), Expect = 5e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 17206277 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 17206278 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 17206336 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206337 actgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12755786 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 12755845 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 12755846 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 12755905 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 12755906 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 12755965 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12755966 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 12756025 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756026 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 12756085 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756086 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 12756145 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756146 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 12756205 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 12756206 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 12756257 Score = 737 bits (372), Expect = 0.0 Identities = 447/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 19545795 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactagttt 19545736 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct: 19545735 agtaaaattcaattctctcaattcctcgacgatcgtgccaaaaacgcgagttccttttgg 19545676 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 19545675 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 19545616 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 19545615 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttgagatctttc 19545556 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545555 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 19545496 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545495 atattgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 19545436 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545435 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 19545376 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 19545375 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 158 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 217 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 218 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 278 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 337 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 338 tcctatgactcgaatacacat 358 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 63 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 122 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 123 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 182 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 183 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 242 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 243 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 302 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 303 tcaccaatacgagcatatcgctgattaccagcagctccta 342 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 385 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 444 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3109364 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 3109423 Query: 445 tg 446 || Sbjct: 3109424 tg 3109425 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 426 tttcaatttgttatttcaatgcaaa 450 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71041 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 70982 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 70981 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 70922 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 70921 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 70862 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70861 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 70802 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 70801 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 70742 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70741 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 70682 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70681 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 70622 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 70621 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 70570
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1440 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1439 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1380 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1379 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1320 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1319 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1260 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1259 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 1200 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1199 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 1140 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1139 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 1080 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1079 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 1028
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1714 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1655 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1654 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1595 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1594 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1535 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1534 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1475 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 1415 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 1355 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 1295 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1294 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 1243
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 785 bits (396), Expect = 0.0 Identities = 453/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375069 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 10375128 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 10375129 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 10375188 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 10375189 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 10375248 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375249 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 10375308 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375309 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 10375368 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375369 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 10375428 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375429 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 10375488 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 10375489 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 203 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 258 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 259 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 318 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 319 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 363 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5656684 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactattgt 5656743 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 5656744 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 5656803 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 5656804 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 5656863 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656864 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 5656923 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656924 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 5656983 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656984 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 5657043 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657044 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 5657103 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 5657104 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 5657155 Score = 365 bits (184), Expect = 1e-97 Identities = 226/240 (94%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20514196 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 20514255 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 20514256 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 20514315 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 20514316 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 20514375 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20514376 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 20514435 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 70 ctattttggtaaaattcaattctctcaattc 100 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497000 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 33497059 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 33497060 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 33497119 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 33497120 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 33497179 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497180 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 33497239 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 33497240 tagaggcatttggggcactgcatctttgattacagcaacaataacatcaccaatacgagc 33497299 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497300 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 33497359 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497360 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 33497419 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 33497420 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 132 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 191 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 192 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 251 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 252 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 311 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 312 cgagcatat 320 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 69.9 bits (35), Expect = 8e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 234 gctc 237 |||| Sbjct: 39109207 gctc 39109204 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgat 150 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgat 150 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42197 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 42256 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 42257 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 42316 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 42317 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 42376 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42377 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 42436 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 42437 tagaggcatttggggcactgcatctttgattacagcaacaataacatcaccaatacgagc 42496 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42497 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 42556 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42557 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 42616 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 42617 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 42668
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 748 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 689 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 688 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 629 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 628 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 569 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 509 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 tagaggcatttggagcactgcgtctttgattacagcaacaataacatcaccaatacgagc 449 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 389 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 329 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 328 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 277
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5656677 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactattgt 5656736 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 5656737 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 5656796 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 5656797 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 5656856 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656857 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 5656916 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656917 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 5656976 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656977 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 5657036 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657037 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 5657096 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 5657097 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 5657148 Score = 365 bits (184), Expect = 1e-97 Identities = 226/240 (94%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20440410 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 20440469 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 20440470 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 20440529 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 20440530 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 20440589 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20440590 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 20440649 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 70 ctattttggtaaaattcaattctctcaattc 100 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11207 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactattgt 11266 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 11267 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 11326 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 11327 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 11386 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11387 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 11446 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 11447 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 11506 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11507 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 11566 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11567 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 11626 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 11627 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 11678
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 777 bits (392), Expect = 0.0 Identities = 452/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77177 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 77236 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 77237 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 77296 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 77297 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 77356 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77357 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 77416 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77417 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 77476 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77477 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccgct 77536 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77537 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 77596 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77597 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 77648
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1489 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1430 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1429 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1370 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1369 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1310 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1250 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 1190 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1189 atatcgctgattactagcagctcctatgactcgaatacacatcaatttttgagctccact 1130 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 1070 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 |||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 1069 tatttcaatgcaaaaggatgaaagaaatatcgtctttccagaaagaagaacc 1018
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1489 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1430 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1429 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1370 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1369 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1310 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1250 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 1190 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1189 atatcgctgattactagcagctcctatgactcgaatacacatcaatttttgagctccact 1130 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 1070 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 |||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 1069 tatttcaatgcaaaaggatgaaagaaatatcgtctttccagaaagaagaacc 1018
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27922717 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 27922776 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 27922777 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 27922836 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 27922837 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 27922896 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27922897 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 27922956 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 27922957 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 27923016 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 27923017 atatcgctgattactagcagctcctatgactcgaatacacatcaatttttgagctccact 27923076 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923077 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 27923136 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 |||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 27923137 tatttcaatgcaaaaggatgaaagaaatatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 66 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 125 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 126 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 185 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 186 attataccgtcttcgcatttgaa 208 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181868 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 23181809 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct: 23181808 agtaaaattcaattctctcaattcctcggcgatcgtgccaaaaacgtgagttccttttgg 23181749 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 23181748 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 23181689 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181688 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 23181629 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181628 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 23181569 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181568 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 23181509 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181508 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 23181449 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 23181448 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 23181397
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86075 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 86134 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 86135 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 86194 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 86195 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 86254 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86255 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 86314 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 86315 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 86374 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 86375 atatcgctgattactagcagctcctatgactcgaatacacatcaatttttgagctccact 86434 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86435 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 86494 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 |||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 86495 tatttcaatgcaaaaggatgaaagaaatatcgtctttccagaaagaagaacc 86546
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12051 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 12110 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 12111 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 12170 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 12171 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 12230 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12231 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 12290 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 12291 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 12350 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 12351 atatcgctgattactagcagctcctatgactcgaatacacatcaatttttgagctccact 12410 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12411 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 12470 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 |||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 12471 tatttcaatgcaaaaggatgaaagaaatatcgtctttccagaaagaagaacc 12522
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132516 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 132457 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct: 132456 agtaaaattcaattctctcaattcctcggcgatcgtgccaaaaacgtgagttccttttgg 132397 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 132396 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 132337 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132336 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 132277 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 132276 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 132217 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132216 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 132157 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132156 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 132097 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 132096 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 132045
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 769 bits (388), Expect = 0.0 Identities = 451/472 (95%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16630 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 16571 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct: 16570 agtaaaattcaattctctcaattcctcggcgatcgtgccaaaaacgtgagttccttttgg 16511 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 16510 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 16451 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16450 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 16391 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 16390 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 16331 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16330 atatcgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 16271 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16270 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 16211 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 16210 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 16159
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 759 bits (383), Expect = 0.0 Identities = 452/475 (95%) Strand = Plus / Plus Query: 14 ttctttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactat 73 |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 109 ttctttgatctatatctcgtctactagtatttataatacttcaggagctaatgaaactat 168 Query: 74 tttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttt 133 ||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct: 169 tttagtataattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttccttt 228 Query: 134 tgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatacc 193 ||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct: 229 tggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatacc 288 Query: 194 gtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatct 253 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 289 gtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatct 348 Query: 254 ttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacg 313 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 349 ttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatacg 408 Query: 314 agcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctcc 373 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 409 agcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctcc 468 Query: 374 actattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatt 433 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 469 actgttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttccatt 528 Query: 434 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 583 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 514 ttttagggttctatatctctaatcgaa 540 |||| |||||||||||||||||||||| Sbjct: 610 ttttggggttctatatctctaatcgaa 636
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 759 bits (383), Expect = 0.0 Identities = 452/475 (95%) Strand = Plus / Plus Query: 14 ttctttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactat 73 |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 79666 ttctttgatctatatctcgtctactagtatttataatacttcaggagctaatgaaactat 79725 Query: 74 tttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttt 133 ||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct: 79726 tttagtataattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttccttt 79785 Query: 134 tgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatacc 193 ||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct: 79786 tggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatacc 79845 Query: 194 gtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatct 253 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 79846 gtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatct 79905 Query: 254 ttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacg 313 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 79906 ttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatacg 79965 Query: 314 agcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctcc 373 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79966 agcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctcc 80025 Query: 374 actattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatt 433 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 80026 actgttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttccatt 80085 Query: 434 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80086 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 80140 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 514 ttttagggttctatatctctaatcgaa 540 |||| |||||||||||||||||||||| Sbjct: 80167 ttttggggttctatatctctaatcgaa 80193
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 751 bits (379), Expect = 0.0 Identities = 451/475 (94%) Strand = Plus / Plus Query: 14 ttctttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactat 73 |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 79008 ttctttgatctatatctcgtctactagtatttataatacttcaggagctaatgaaactat 79067 Query: 74 tttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttt 133 ||| || |||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct: 79068 tttagtcaaattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttccttt 79127 Query: 134 tgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatacc 193 ||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct: 79128 tggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatacc 79187 Query: 194 gtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatct 253 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 79188 gtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatct 79247 Query: 254 ttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacg 313 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 79248 ttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatacg 79307 Query: 314 agcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctcc 373 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79308 agcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctcc 79367 Query: 374 actattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatt 433 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 79368 actgttatctgctacatttaaaagggtctgaggttgaatcatattatttggatttccatt 79427 Query: 434 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79428 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 79482 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 514 ttttagggttctatatctctaatcgaa 540 |||| |||||||||||||||||||||| Sbjct: 79509 ttttggggttctatatctctaatcgaa 79535
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 751 bits (379), Expect = 0.0 Identities = 451/475 (94%) Strand = Plus / Minus Query: 14 ttctttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactat 73 |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ttctttgatctatatctcgtctactagtatttataatacttcaggagctaatgaaactat 602 Query: 74 tttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttt 133 ||| || |||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct: 601 tttagtcaaattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttccttt 542 Query: 134 tgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatacc 193 ||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct: 541 tggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatacc 482 Query: 194 gtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatct 253 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 481 gtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatct 422 Query: 254 ttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacg 313 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 421 ttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatacg 362 Query: 314 agcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctcc 373 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 361 agcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctcc 302 Query: 374 actattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatt 433 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 301 actgttatctgctacatttaaaagggtctgaggttgaatcatattatttggatttccatt 242 Query: 434 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 187 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 514 ttttagggttctatatctctaatcgaa 540 |||| |||||||||||||||||||||| Sbjct: 160 ttttggggttctatatctctaatcgaa 134
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 751 bits (379), Expect = 0.0 Identities = 451/475 (94%) Strand = Plus / Plus Query: 14 ttctttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactat 73 |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 79024 ttctttgatctatatctcgtctactagtatttataatacttcaggagctaatgaaactat 79083 Query: 74 tttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttt 133 ||| || |||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct: 79084 tttagtcaaattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttccttt 79143 Query: 134 tgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatacc 193 ||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct: 79144 tggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatacc 79203 Query: 194 gtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatct 253 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 79204 gtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatct 79263 Query: 254 ttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacg 313 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 79264 ttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatacg 79323 Query: 314 agcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctcc 373 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79324 agcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctcc 79383 Query: 374 actattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatt 433 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 79384 actgttatctgctacatttaaaagggtctgaggttgaatcatattatttggatttccatt 79443 Query: 434 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79444 tgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 79498 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 514 ttttagggttctatatctctaatcgaa 540 |||| |||||||||||||||||||||| Sbjct: 79525 ttttggggttctatatctctaatcgaa 79551
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 745 bits (376), Expect = 0.0 Identities = 448/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 690 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 689 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 630 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 629 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 570 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 510 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 509 tagaggcatttggggcactacgtctttgattacagcaacaataacatcaccaatacgagc 450 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 449 atatcgctgactactagcagctcctatgactcgaatacacattaattttcgagctccagt 390 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 389 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttat 330 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 329 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 278
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 745 bits (376), Expect = 0.0 Identities = 448/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1477 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1418 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1417 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1358 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1357 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1298 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1238 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 1237 tagaggcatttggggcactacgtctttgattacagcaacaataacatcaccaatacgagc 1178 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1177 atatcgctgactactagcagctcctatgactcgaatacacattaattttcgagctccagt 1118 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1117 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttat 1058 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1057 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 1006
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 745 bits (376), Expect = 0.0 Identities = 448/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1692 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1633 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1632 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1573 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1572 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 1513 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1512 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 1453 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 1452 tagaggcatttggggcactacgtctttgattacagcaacaataacatcaccaatacgagc 1393 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1392 atatcgctgactactagcagctcctatgactcgaatacacattaattttcgagctccagt 1333 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1332 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttat 1273 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1272 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 1221
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 745 bits (376), Expect = 0.0 Identities = 448/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11896649 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 11896590 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 11896589 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 11896530 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 11896529 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 11896470 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11896469 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 11896410 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 11896409 tagaggcatttggggcactacgtctttgattacagcaacaataacatcaccaatacgagc 11896350 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 11896349 atatcgctgactactagcagctcctatgactcgaatacacattaattttcgagctccagt 11896290 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11896289 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttat 11896230 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 11896229 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 11896178 Score = 186 bits (94), Expect = 5e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 20862633 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 20862692 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 20862693 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 20862751 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862752 attgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 7e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 408 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 468 gtctttccagaaagaaaaacc 488 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 745 bits (376), Expect = 0.0 Identities = 448/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78139 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 78080 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 78079 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 78020 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 78019 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 77960 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77959 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 77900 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 77899 tagaggcatttggggcactacgtctttgattacagcaacaataacatcaccaatacgagc 77840 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 77839 atatcgctgactactagcagctcctatgactcgaatacacattaattttcgagctccagt 77780 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77779 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttat 77720 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77719 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 77668
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 745 bits (376), Expect = 0.0 Identities = 448/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 1070 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1069 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 1010 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1009 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 950 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 890 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 889 tagaggcatttggggcactacgtctttgattacagcaacaataacatcaccaatacgagc 830 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 829 atatcgctgactactagcagctcctatgactcgaatacacattaattttcgagctccagt 770 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 769 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttat 710 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 709 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 658
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 737 bits (372), Expect = 0.0 Identities = 447/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 146507 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactagttt 146448 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct: 146447 agtaaaattcaattctctcaattcctcgacgatcgtgccaaaaacgcgagttccttttgg 146388 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 146387 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 146328 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 146327 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttgagatctttc 146268 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 146267 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 146208 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146207 atattgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 146148 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146147 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 146088 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 146087 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 146036
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 737 bits (372), Expect = 0.0 Identities = 447/472 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 5694 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactagttt 5635 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct: 5634 agtaaaattcaattctctcaattcctcgacgatcgtgccaaaaacgcgagttccttttgg 5575 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 5574 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 5515 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5514 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttgagatctttc 5455 Query: 257 tagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagc 316 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 5454 tagaggcatttggggcactgcgtctttgattacagcaacaataacatcaccaatacgagc 5395 Query: 317 atatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccact 376 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5394 atattgctgattactagcagctcctatgactcgaatacacatcaattttcgagctccact 5335 Query: 377 attgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 436 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5334 gttatctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgt 5275 Query: 437 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 5274 tatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaagaacc 5223
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 618 bits (312), Expect = e-174 Identities = 357/372 (95%) Strand = Plus / Minus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 313 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 312 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 253 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 193 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 192 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 133 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 72 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 13 Query: 404 aggttgaatcat 415 |||||||||||| Sbjct: 12 aggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 177 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 236 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 237 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 296 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 297 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 356 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 357 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 416 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 14556 Query: 417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14557 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 14616 Query: 477 gaaa 480 |||| Sbjct: 14617 gaaa 14620 Score = 202 bits (102), Expect = 9e-49 Identities = 148/162 (91%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13978 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 14037 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 14038 agtaaaattcaattctctcaattcctaggcgatcgcgccaaaaacgcgagttccttttgg 14097 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcata 178 || ||||||| |||||| |||||||| |||||||| ||||| Sbjct: 14098 atttccttttt-atcaatgataaccgctgcattgtcgtcata 14138
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 177 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 236 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 237 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 296 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 297 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 356 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 357 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 416 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24638370 Query: 417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24638371 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24638430 Query: 477 gaaa 480 |||| Sbjct: 24638431 gaaa 24638434 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32000678 Query: 407 ttgaatcatattattttgatttcaatttgttatttcaatgc 447 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000679 ttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 202 bits (102), Expect = 9e-49 Identities = 148/162 (91%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24637792 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 24637851 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 24637852 agtaaaattcaattctctcaattcctaggcgatcgcgccaaaaacgcgagttccttttgg 24637911 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcata 178 || ||||||| |||||| |||||||| |||||||| ||||| Sbjct: 24637912 atttccttttt-atcaatgataaccgctgcattgtcgtcata 24637952 Score = 163 bits (82), Expect = 7e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27557409 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27557468 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27557469 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27557527 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557528 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 177 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 236 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 237 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 296 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 297 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 356 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 357 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 416 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 70416 Query: 417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 70417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 70476 Query: 477 gaaa 480 |||| Sbjct: 70477 gaaa 70480 Score = 202 bits (102), Expect = 9e-49 Identities = 148/162 (91%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69838 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 69897 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 69898 agtaaaattcaattctctcaattcctaggcgatcgcgccaaaaacgcgagttccttttgg 69957 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcata 178 || ||||||| |||||| |||||||| |||||||| ||||| Sbjct: 69958 atttccttttt-atcaatgataaccgctgcattgtcgtcata 69998
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 177 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 236 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 237 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 296 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 297 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 356 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 357 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 416 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24555839 Query: 417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24555840 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24555899 Query: 477 gaaa 480 |||| Sbjct: 24555900 gaaa 24555903 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32091190 Query: 407 ttgaatcatattattttgatttcaatttgttatttcaatgc 447 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091191 ttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 202 bits (102), Expect = 9e-49 Identities = 148/162 (91%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24555261 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 24555320 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 24555321 agtaaaattcaattctctcaattcctaggcgatcgcgccaaaaacgcgagttccttttgg 24555380 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcata 178 || ||||||| |||||| |||||||| |||||||| ||||| Sbjct: 24555381 atttccttttt-atcaatgataaccgctgcattgtcgtcata 24555421 Score = 163 bits (82), Expect = 7e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27648732 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27648791 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27648792 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27648850 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648851 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 92630 Query: 407 ttgaatcatattattttgatttcaatttgttatttcaatgc 447 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 92631 ttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 1803 Query: 407 ttgaatcatattattttgatttcaatttgttatttcaatgc 447 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 1804 ttgaatcatattattttgattttaatttgttatttcaatgc 1844
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 402 bits (203), Expect = e-109 Identities = 325/365 (89%), Gaps = 3/365 (0%) Strand = Plus / Minus Query: 51 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 110 |||||||||||||||||||||||||| ||||||||||| | |||||||||| || ||| Sbjct: 362 acttcaggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgatc 303 Query: 111 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 170 || ||||||||||||||||||||||| || |||| ||||||||| | ||| ||||||||| Sbjct: 302 gcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcattg 243 Query: 171 tcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaatt 230 |||||||| || ||||| ||||||| ||| | ||||| |||||||||||||||||||||| Sbjct: 242 tcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaatt 183 Query: 231 acagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattaca 290 ||||||| ||||||||| ||||||||||||||||| | ||| | ||| |||||||||||| Sbjct: 182 acagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattaca 123 Query: 291 gcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcga 350 ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| Sbjct: 122 gcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcga 66 Query: 351 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 410 |||||||| |||||||||||||| || || || |||||||| |||||||||||||||||| Sbjct: 65 atacacattaattttcgagctccgctgttatccgctacattcaaaagggtctgaggttga 6 Query: 411 atcat 415 ||||| Sbjct: 5 atcat 1
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 387 bits (195), Expect = e-104 Identities = 326/369 (88%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||| || |||||||||||||||||||| ||||||||||| | |||||||||| || Sbjct: 366 taatacctcgggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagc 307 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 |||||| ||||||| |||||||||||||||||| |||| ||||||||| | |||||| || Sbjct: 306 aatcgccccaaaaattcgagttccttttgggtttccttcttgatcaatgacaaccgctgc 247 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||| Sbjct: 186 aattacagctctaattacttctgatctttctagaggcatattgggcactgcttctttgat 127 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 ||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggtgattac---cagcccctatgat 70 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 ||||||||||||||||| ||||||||| || || ||||||||||| |||||||| ||||| Sbjct: 69 tcgaatacacatcaattctcgagctccgctgttatctgctacattcaaaagggtttgagg 10 Query: 407 ttgaatcat 415 ||||||||| Sbjct: 9 ttgaatcat 1
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 365 bits (184), Expect = 1e-97 Identities = 226/240 (94%) Strand = Plus / Minus Query: 17 tttgatctaaatttcgcctactagtatttataatacttcaggagctaatgaaactatttt 76 ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79037 tttgatctatatcttgtctactagtatttataatacttcaggagctaatgaaactatttt 78978 Query: 77 ggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 78977 agtaaaattcaattctctcaattcctcggcgatcgcgccaaaaacgcgagttccttttgg 78918 Query: 137 gttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtc 196 || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 78917 atttcctttttgatcaatgataaccgctgcattgtcgtcatagcgtattattataccgtc 78858 Query: 197 ttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttc 256 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78857 ttcgcatttgaactctttacatgtacgtacaattacagctcgaattacttcggatctttc 78798
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 158 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 217 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 218 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 278 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 337 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 338 tcctatgactcgaatacacat 358 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 63 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 122 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 123 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 182 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 183 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 242 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 243 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 302 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 303 tcaccaatacgagcatatcgctgattaccagcagctccta 342 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 385 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 444 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 96608 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 96667 Query: 445 tg 446 || Sbjct: 96668 tg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 158 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 217 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 218 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 278 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 337 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 338 tcctatgactcgaatacacat 358 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 349 bits (176), Expect = 6e-93 Identities = 337/390 (86%), Gaps = 3/390 (0%) Strand = Plus / Plus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 93 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | || Sbjct: 81909 ctactagtatttataagacttcaggggctaatgagactattttagtgaaatttaactttc 81968 Query: 94 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 153 |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 81969 tcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatcaa 82028 Query: 154 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 213 | | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| ||||| Sbjct: 82029 tgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttctt 82088 Query: 214 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 273 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct: 82089 tacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggca 82148 Query: 274 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 333 ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82149 ctgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac--- 82205 Query: 334 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 393 ||| ||||||| |||||| |||||||||| |||||| || || ||||| |||||||| | Sbjct: 82206 tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattca 82265 Query: 394 aaagggtctgaggttgaatcatattatttt 423 || ||||||||||||||||||||| ||||| Sbjct: 82266 aatgggtctgaggttgaatcatatcatttt 82295
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 323 bits (163), Expect = 3e-85 Identities = 344/401 (85%), Gaps = 5/401 (1%) Strand = Plus / Plus Query: 45 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 104 ||||| ||||| || ||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct: 82583 tataagacttcgggtgctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcg 82641 Query: 105 -gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||||| || ||||||| ||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 82642 agcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataaccgc 82701 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||||||||||| || ||||| || |||| || | ||||| |||||||||||| || Sbjct: 82702 tgcattgtcatcatatcgtattatcatgccgttgtcacgtttgagttctttacatgtgcg 82761 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||| ||||||| ||||| ||| ||||||||||||||||| | ||||| ||| ||||| Sbjct: 82762 tacaatcacagctctaattatttctgatctttctagaggcatgttgggcactgcttcttt 82821 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||||||||||||||||||||| |||| | |||||||||| ||||||| ||| |||||| Sbjct: 82822 gattacagcaacaataacatcgccaagatgagcatatcggtgattac---cagttcctat 82878 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 || |||||||||||| |||||| |||||||||| || || |||||||| ||||||||||| Sbjct: 82879 gattcgaatacacattaatttttgagctccactgttatccgctacattcaaaagggtctg 82938 Query: 404 aggttgaatcatattattttgatttcaatttgttatttcaa 444 |||||||||||||| ||||| | || ||| | ||||||||| Sbjct: 82939 aggttgaatcatatcatttttaatttaatctcttatttcaa 82979
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 319 bits (161), Expect = 5e-84 Identities = 328/383 (85%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 41 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 100 |||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 80435 tatttataatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattc 80494 Query: 101 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 160 | || ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| Sbjct: 80495 ccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaac 80554 Query: 161 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 220 || |||||||||||||| || ||||| ||||||| || | ||||| |||||||||||| Sbjct: 80555 tgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgt 80614 Query: 221 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 280 ||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| || Sbjct: 80615 acgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgcttc 80674 Query: 281 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 340 ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| Sbjct: 80675 tttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcc 80731 Query: 341 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 400 ||||| ||||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 80732 tatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggt 80791 Query: 401 ctgaggttgaatcatattatttt 423 ||||||||||||||||| ||||| Sbjct: 80792 ctgaggttgaatcatatcatttt 80814
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 307 bits (155), Expect = 2e-80 Identities = 319/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82415 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82416 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82475 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82476 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82535 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82536 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82595 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82596 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82652 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82653 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82712 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 82713 gaggttgaatcat 82725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 305 bits (154), Expect = 8e-80 Identities = 184/194 (94%) Strand = Plus / Minus Query: 295 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 354 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 355 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 414 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 24916707 Query: 415 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 474 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 24916706 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 24916647 Query: 475 cagaaagaaaaacc 488 ||||||||| |||| Sbjct: 24916646 cagaaagaagaacc 24916633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 98 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 157 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 158 aaccgcagcattgtcatc 175 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 79 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 121 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 305 bits (154), Expect = 8e-80 Identities = 184/194 (94%) Strand = Plus / Minus Query: 295 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 354 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 355 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 414 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 77990 Query: 415 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 474 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 77989 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 77930 Query: 475 cagaaagaaaaacc 488 ||||||||| |||| Sbjct: 77929 cagaaagaagaacc 77916
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 299 bits (151), Expect = 5e-78 Identities = 315/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||| |||||||||| ||||||||||| || |||||||| | |||||||||| || Sbjct: 366 taatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattcccgagc 307 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || || Sbjct: 306 gatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaactgctgc 247 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| |||||||| Sbjct: 186 aattacagctctgaccacttctgatctttctagagacatattgggtactgcttctttgat 127 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 ||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcctatgat 70 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 ||||||||||||||||| |||||| || || || || ||||||||||||||||||||||| Sbjct: 69 tcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggtctgagg 10 Query: 407 ttgaatcat 415 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 299 bits (151), Expect = 5e-78 Identities = 324/381 (85%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcgggagctaatgaaactattttagtaaaattgaactgtctcaattctc 80141 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80142 gggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaactg 80201 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 80202 cagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 80261 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||| Sbjct: 80262 ggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctt 80321 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 80322 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 80378 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||| Sbjct: 80379 tgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtct 80438 Query: 403 gaggttgaatcatattatttt 423 ||||||||||||||| ||||| Sbjct: 80439 gaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 299 bits (151), Expect = 5e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82364 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82365 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82424 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82425 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82484 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82485 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82544 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82545 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82601 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82602 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82661 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 82662 gaggttgaatcat 82674
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 299 bits (151), Expect = 5e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82376 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82377 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82436 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82437 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82496 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82497 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82556 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82557 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82613 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82614 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82673 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 82674 gaggttgaatcat 82686
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 291 bits (147), Expect = 1e-75 Identities = 314/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 ||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| || Sbjct: 366 taatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattcacgagc 307 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 ||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || || Sbjct: 306 aatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctgc 247 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 226 |||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 246 attgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgtac 187 Query: 227 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 286 ||||||||||| |||||||| |||||||| || ||||| | |||| ||| |||||||| Sbjct: 186 aattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttgat 127 Query: 287 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 346 ||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 126 tacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatgat 70 Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||||| |||||||||||| || ||||| |||||||| ||| |||||||||| Sbjct: 69 tcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtctgagg 10 Query: 407 ttgaatcat 415 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 291 bits (147), Expect = 1e-75 Identities = 323/381 (84%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccggagctaatgaaactattttagtaaaatttaactgtctcaattccc 82726 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | ||||| Sbjct: 82727 gggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaaccg 82786 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 82787 cagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagtac 82846 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 ||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| |||| Sbjct: 82847 gtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttctt 82906 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||| ||| |||||||||| |||| | |||||||| Sbjct: 82907 tgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctccta 82963 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || || || || |||||||| |||||||||| Sbjct: 82964 tgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtct 83023 Query: 403 gaggttgaatcatattatttt 423 ||||||||||||||| ||||| Sbjct: 83024 gaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82511 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82512 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82571 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82572 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82631 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82632 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82691 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82692 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82748 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82749 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82808 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 82809 gaggttgaatcat 82821
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82508 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82509 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82568 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82569 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82628 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82629 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82688 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82689 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82745 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82746 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82805 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 82806 gaggttgaatcat 82818
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 289 bits (146), Expect = 5e-75 Identities = 322/380 (84%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggggctaaggaaactattttagtaaaatttaactgtctcaattcccg 85601 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| || Sbjct: 85602 gacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactgc 85661 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 ||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 85662 agcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtacg 85721 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||||||||||| |||||||| ||||||||||||||||| | || | | | ||||| Sbjct: 85722 tacaattacagctctgattacttctgatctttctagaggcatatttggtactacttcttt 85781 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||| |||||||||||||| ||||||||| |||| ||||| |||||| || |||||| Sbjct: 85782 gatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttcctat 85838 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 || ||||||||||||||||| ||| || || || ||||| |||||||| ||| ||||||| Sbjct: 85839 gattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtctg 85898 Query: 404 aggttgaatcatattatttt 423 ||||||||||||| ||||| Sbjct: 85899 gggttgaatcatatcatttt 85918
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 45 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 104 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80638 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80697 Query: 105 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 164 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80698 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80757 Query: 165 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 224 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80758 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80817 Query: 225 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 284 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80818 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80877 Query: 285 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 344 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80878 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80934 Query: 345 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 404 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80935 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80994 Query: 405 ggttgaatcatattatttt 423 ||||||||||||| ||||| Sbjct: 80995 ggttgaatcatatcatttt 81013
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 287 bits (145), Expect = 2e-74 Identities = 318/375 (84%), Gaps = 3/375 (0%) Strand = Plus / Plus Query: 41 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 100 ||||||||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| Sbjct: 86608 tatttataatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattc 86667 Query: 101 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 160 ||||||| ||||||||||| || |||||||| || |||| ||||||||| | ||| Sbjct: 86668 acgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaac 86727 Query: 161 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 220 || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||||| Sbjct: 86728 tgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatgt 86787 Query: 221 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 280 ||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| || Sbjct: 86788 acgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgcttc 86847 Query: 281 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 340 ||||||||||||||||||||| ||||| ||| |||||||||| | ||||| |||||| Sbjct: 86848 tttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcc 86904 Query: 341 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 400 ||||| |||||||||||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct: 86905 tatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaagggt 86964 Query: 401 ctgaggttgaatcat 415 ||||||||||||||| Sbjct: 86965 ctgaggttgaatcat 86979
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 45 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 104 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80636 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80695 Query: 105 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 164 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80696 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80755 Query: 165 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 224 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80756 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80815 Query: 225 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 284 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80816 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80875 Query: 285 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 344 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80876 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80932 Query: 345 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 404 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80933 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80992 Query: 405 ggttgaatcatattatttt 423 ||||||||||||| ||||| Sbjct: 80993 ggttgaatcatatcatttt 81011
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 285 bits (144), Expect = 7e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83019 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83020 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83079 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83080 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83139 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83140 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83199 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83200 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83256 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83257 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83316 Query: 403 gaggttgaatcatattattttg 424 |||||||||||||||||||||| Sbjct: 83317 gaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 285 bits (144), Expect = 7e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Minus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 377 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 376 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 317 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 316 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 257 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 256 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 197 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 196 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 140 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 139 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 80 Query: 403 gaggttgaatcatattattttg 424 |||||||||||||||||||||| Sbjct: 79 gaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 285 bits (144), Expect = 7e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83247 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83248 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83307 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83308 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83367 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83368 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83427 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83428 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83484 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83485 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83544 Query: 403 gaggttgaatcatattattttg 424 |||||||||||||||||||||| Sbjct: 83545 gaggttgaatcatattattttg 83566
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 283 bits (143), Expect = 3e-73 Identities = 316/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82999 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83000 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83059 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || | Sbjct: 83060 cagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtcc 83119 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83120 gcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttctt 83179 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83180 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83236 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83237 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83296 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 83297 gaggttgaatcat 83309
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 276 bits (139), Expect = 7e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83236 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83237 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83296 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83297 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83356 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83357 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83416 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83417 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83473 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83474 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83533 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 83534 gaggttgaatcat 83546
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 276 bits (139), Expect = 7e-71 Identities = 317/375 (84%), Gaps = 6/375 (1%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 79295 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| || Sbjct: 79296 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactgc 79355 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 ||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| ||||| Sbjct: 79356 agcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtacg 79415 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 ||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| ||||| Sbjct: 79416 tacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttcttt 79475 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||| |||||||||||||| |||||||||||||||||||| | || | ||||||||| Sbjct: 79476 gatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcctat 79532 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 || ||||||||||||||||| |||||| || || |||||||||||||| ||| ||||||| Sbjct: 79533 gattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtctg 79592 Query: 404 aggttgaatcatatt 418 ||||||||||||||| Sbjct: 79593 aggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 276 bits (139), Expect = 7e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83479 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83480 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83539 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 83540 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 83599 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| |||| Sbjct: 83600 gcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttctt 83659 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83660 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83716 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| |||||||||||| |||| |||||| || || || || |||||||||||| |||||| Sbjct: 83717 tgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtct 83776 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 83777 gaggttgaatcat 83789
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 276 bits (139), Expect = 7e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83234 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83235 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83294 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83295 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83354 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83355 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83414 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83415 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83471 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83472 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83531 Query: 403 gaggttgaatcat 415 ||||||||||||| Sbjct: 83532 gaggttgaatcat 83544
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 274 bits (138), Expect = 3e-70 Identities = 314/372 (84%), Gaps = 3/372 (0%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| || |||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 85087 ttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccg 85146 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||| ||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85147 ggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggc 85206 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 ||||||||||||||| || ||||| || |||| |||| ||||| |||||||| ||||| Sbjct: 85207 agcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacgagtacg 85266 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||||||||||| || ||||| |||||||||||||| | | || | ||| || || Sbjct: 85267 tacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttcctt 85326 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 85327 gatcacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 85383 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 |||||||||||||||||||| ||| || || || || ||||||||||| ||| ||||||| Sbjct: 85384 gactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg 85443 Query: 404 aggttgaatcat 415 |||||||||||| Sbjct: 85444 aggttgaatcat 85455
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 254 bits (128), Expect = 3e-64 Identities = 317/378 (83%), Gaps = 9/378 (2%) Strand = Plus / Minus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 3641 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc-- 161 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3640 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaac 3581 Query: 162 -gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 220 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| || Sbjct: 3580 tgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagt 3521 Query: 221 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 280 |||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| || Sbjct: 3520 acgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttc 3461 Query: 281 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 340 |||||| |||||||||||||| |||||||||||||||||||| | || | |||||| Sbjct: 3460 tttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcc 3404 Query: 341 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 400 ||||| ||||||||||||||||| |||||| || || |||||||||||||| ||| |||| Sbjct: 3403 tatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggt 3344 Query: 401 ctgaggttgaatcatatt 418 |||||||||||||||||| Sbjct: 3343 ctgaggttgaatcatatt 3326
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 250 bits (126), Expect = 4e-63 Identities = 317/380 (83%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 80755 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 80756 tgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgc 80815 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||||||||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 80816 ggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtacg 80875 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||||||||||| ||| ||||| |||||||||||||| | | || | ||| ||||| Sbjct: 80876 tacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttcttt 80935 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 |||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 80936 gattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 80992 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 | ||||||||||||||||| || ||| || || |||||||||||||| ||| ||| || Sbjct: 80993 tattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggtttg 81052 Query: 404 aggttgaatcatattatttt 423 ||||||||||||| ||||| Sbjct: 81053 tggttgaatcatatcatttt 81072
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 143 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 202 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 203 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 262 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 263 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 312 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 143 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 202 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 203 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 262 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 263 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 312 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 238 bits (120), Expect = 2e-59 Identities = 310/370 (83%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 105 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| | Sbjct: 366 taatacttcaggggctaatgaaactattttagtaaaattcaactgtctcaactc-tcgag 308 Query: 106 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 165 | || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || | Sbjct: 307 cgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgctg 248 Query: 166 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 225 ||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || |||| Sbjct: 247 cattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgta 188 Query: 226 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 285 |||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| ||||||| Sbjct: 187 caattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttga 128 Query: 286 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 345 |||| ||||||||||| || |||||| ||||||| || |||||| ||||||||||| Sbjct: 127 ttaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatga 71 Query: 346 ctcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgag 405 || ||||||||| ||||||| ||| || || ||||| |||||||||||| |||||||| Sbjct: 70 ttctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtctgag 11 Query: 406 gttgaatcat 415 |||||||||| Sbjct: 10 gttgaatcat 1
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 234 bits (118), Expect = 2e-58 Identities = 306/368 (83%), Gaps = 3/368 (0%) Strand = Plus / Plus Query: 48 aatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggca 107 ||||| || ||||||||||| ||||| || || |||||||| | |||||||||| | || Sbjct: 87322 aatacctcgggagctaatgatactatcttagtgaaattcaaatgtctcaattccccagcg 87381 Query: 108 atcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagca 167 |||| ||||| ||||||||||||||||| || || | | ||||||| | ||| || ||| Sbjct: 87382 atcgaaccaaagactcgagttccttttggatttccctctggatcaataacaactgctgca 87441 Query: 168 ttgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtaca 227 ||||||||||| || ||||||||||||| || | ||||| ||||||||||||||||||| Sbjct: 87442 ttgtcatcatatcgtattattataccgttgtcacgtttgagttctttacatgtacgtaca 87501 Query: 228 attacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgatt 287 |||||||||| || ||||| |||||||| || ||||| | ||| | ||| ||||||||| Sbjct: 87502 attacagctctgatcacttctgatctttccaggggcatattgggtactgcttctttgatt 87561 Query: 288 acagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgact 347 |||||||||||||| ||||||||| |||||||||| | |||| |||||||| || | Sbjct: 87562 acagcaacaataacgtcaccaatatgagcatatcgggggttac---tagctcctacgatt 87618 Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 407 |||||||||||||||| |||||| || || ||||| |||||||| ||| ||| |||| | Sbjct: 87619 cgaatacacatcaattctcgagccccgctgttgtccgctacattcaaataggtttgagct 87678 Query: 408 tgaatcat 415 |||||||| Sbjct: 87679 tgaatcat 87686
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 234 bits (118), Expect = 2e-58 Identities = 315/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 85861 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 85862 ggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacagc 85921 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 ||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| ||||| Sbjct: 85922 agcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtacg 85981 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||||||||||| | ||||| ||||||||||| | | || ||||| || || Sbjct: 85982 tacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcctt 86041 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| || Sbjct: 86042 gatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccgat 86098 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 || |||||||||||| |||| |||||| ||||| || || || ||||| ||| |||| || Sbjct: 86099 gattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttg 86158 Query: 404 aggttgaatcatattatttt 423 |||||||||||||| ||||| Sbjct: 86159 aggttgaatcatatcatttt 86178
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 218 bits (110), Expect = 1e-53 Identities = 313/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 85546 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85547 ggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactgc 85606 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 85607 agcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacg 85666 Query: 224 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 283 |||||||||||||| || || || |||||||||||||| | | || ||||| || || Sbjct: 85667 tacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcctt 85726 Query: 284 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 343 ||| ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| Sbjct: 85727 gatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctcctat 85783 Query: 344 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 403 || || ||||||||| |||| ||| || || || || || |||||||| ||| || | || Sbjct: 85784 gattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggctttg 85843 Query: 404 aggttgaatcatattatttt 423 |||||||||||||| ||||| Sbjct: 85844 aggttgaatcatatcatttt 85863
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 216 bits (109), Expect = 6e-53 Identities = 312/377 (82%), Gaps = 7/377 (1%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 79846 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79847 tgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactgc 79906 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||||| ||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 79907 ggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtacg 79966 Query: 224 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 281 |||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79967 tacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttcc 80024 Query: 282 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 341 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| Sbjct: 80025 ttgattacagcaacaataacgtcaccaatatgagcatagcggcgattac---tagctcct 80081 Query: 342 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 401 || | |||||||||||||||||||| ||| || || |||||||||||||| ||| ||| Sbjct: 80082 attattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggtt 80141 Query: 402 tgaggttgaatcatatt 418 || |||||||||||||| Sbjct: 80142 tgtggttgaatcatatt 80158
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 212 bits (107), Expect = 9e-52 Identities = 313/381 (82%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggcgctaatgaaactattttagtgaaattgaactgtctcaattccc 78633 Query: 103 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 162 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 78634 gggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaactg 78693 Query: 163 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 222 ||||||| |||||||| | ||||||||||| | | ||||| ||||||||| |||| Sbjct: 78694 cagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagtac 78753 Query: 223 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 282 ||||||||||||||| || ||||| |||||||||| || | | || | ||| |||| Sbjct: 78754 gtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttctt 78813 Query: 283 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 342 ||||||||||||||| || ||||||||| ||| ||||| |||||| ||| ||||| Sbjct: 78814 tgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tccta 78870 Query: 343 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 402 ||| |||||||||||||||||| || ||||| ||||| || |||||||||||| |||| | Sbjct: 78871 tgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggttt 78930 Query: 403 gaggttgaatcatattatttt 423 ||||||||||||||| ||||| Sbjct: 78931 gaggttgaatcatatcatttt 78951
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 210 bits (106), Expect = 4e-51 Identities = 277/334 (82%), Gaps = 15/334 (4%) Strand = Plus / Minus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 93 |||||||||||| |||||| ||||||||| |||| ||| |||| || ||||||| || Sbjct: 99133 ctactagtatttttaatacctcaggagctcatgagactcttttagtgaaattcataagtc 99074 Query: 94 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 153 |||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 99073 tcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatcaa 99014 Query: 154 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 213 | | ||||| |||||||| || ||||| ||||||| || | ||||| ||||| Sbjct: 99013 tgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttctt 98962 Query: 214 tacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttgg 269 ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | Sbjct: 98961 tacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcattttg 98902 Query: 270 ggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatta 329 |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct: 98901 ggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatta 98842 Query: 330 ccagcagctcctatgactcgaatacacatcaatt 363 | ||||||||| || ||||||||| ||||||| Sbjct: 98841 c---cagctcctaagattcgaatacatatcaatt 98811
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 2e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 218 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 278 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 323 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 161 bits (81), Expect = 3e-36 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 384 gctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttca 443 ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct: 1199 gctacatttaaaagggtctgaggttgaatcatattatttgg-tttccatttgttatttca 1141 Query: 444 a-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 487 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 aatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 262 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 321 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 322 gc 323 || Sbjct: 1201 gc 1200 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 514 ttttagggttctatatctctaatcgaa 540 |||| |||||||||||||||||||||| Sbjct: 1068 ttttggggttctatatctctaatcgaa 1042
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 186 bits (94), Expect = 5e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 54859 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 54918 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 54919 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 54977 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54978 attgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 186 bits (94), Expect = 5e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 137662 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 137721 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 137722 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 137780 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137781 attgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 186 bits (94), Expect = 5e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 130132 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 130133 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 130191 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130192 actgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 186 bits (94), Expect = 5e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 66902 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 66903 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 66961 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66962 actgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 234 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 289 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 290 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 349 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 350 aatacacatcaatt 363 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 87 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 234 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 289 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 290 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 349 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 350 aatacacatcaatt 363 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 87 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 234 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 289 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 290 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 349 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 350 aatacacatcaatt 363 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 87 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 234 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 289 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 290 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 349 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 350 aatacacatcaatt 363 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 87 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330157
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 163 bits (82), Expect = 7e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 106 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5365 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 5306 Query: 107 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 166 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 5305 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 5247 Query: 167 attgtcatcatagcggattattataccgtcttcgcatttgaa 208 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5246 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 203 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 258 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 259 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 318 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 319 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 363 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 234 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 289 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 290 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 349 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 350 aatacacatcaatt 363 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 34 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 87 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 7e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 408 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 468 gtctttccagaaagaaaaacc 488 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 7e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 408 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 468 gtctttccagaaagaaaaacc 488 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 132 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 191 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 192 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 251 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 252 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 311 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 312 cgagcatat 320 |||| |||| Sbjct: 33258 cgagtatat 33250
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 141 bits (71), Expect = 3e-30 Identities = 179/215 (83%) Strand = Plus / Minus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 5845 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| || Sbjct: 5844 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactgc 5785 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||| |||||||| | ||||||||||||| | ||| | || |||||| ||||| Sbjct: 5784 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtacg 5725 Query: 224 tacaattacagctcgaattacttcggatctttcta 258 |||||||||||||| || ||||| |||||||||| Sbjct: 5724 tacaattacagctctgatcacttcagatctttcta 5690 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 281 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 340 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 341 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 400 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 401 ctgaggttgaatcatattatttt 423 |||||||||||||||| ||||| Sbjct: 5550 ttgaggttgaatcatatcatttt 5528
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 66 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 125 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 126 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 185 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 186 attataccgtcttcgcatttgaa 208 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 139 bits (70), Expect = 1e-29 Identities = 306/382 (80%), Gaps = 7/382 (1%) Strand = Plus / Minus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 45042 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 44983 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||| || ||| ||||| ||||||||||||||| || |||| || |||||| | |||||| Sbjct: 44982 ggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgc 44923 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||| Sbjct: 44922 cgcattatcatcatactttattattataccattactacgttttagttctttacaagtacg 44863 Query: 224 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 281 |||||||||||| | || ||||| |||||||||| || | |||||| | ||| | | Sbjct: 44862 tacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgctttt 44805 Query: 282 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 341 |||||||||||||||| || ||||||||| |||||| || |||||| ||| |||| Sbjct: 44804 ttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcct 44748 Query: 342 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 401 |||| ||||||||||||||||| || ||||| ||||| || |||||||||||| ||| Sbjct: 44747 atgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtt 44688 Query: 402 tgaggttgaatcatattatttt 423 |||||||||||||||| ||||| Sbjct: 44687 tgaggttgaatcatatcatttt 44666
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 125 bits (63), Expect = 2e-25 Identities = 177/215 (82%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 79709 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 79768 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||| || || | ||| | ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79769 ggcgattgcacaaaagattcgagttccttttggatttccttcttgatcaatgacaactgc 79828 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||| |||||||| | ||||||||||||| | ||||| ||||||||| ||||| Sbjct: 79829 agcattatcatcatactgaattattataccgttgctacgtttgagttctttacaagtacg 79888 Query: 224 tacaattacagctcgaattacttcggatctttcta 258 |||||||||||||| || ||||| |||||||||| Sbjct: 79889 tacaattacagctctgatcacttctgatctttcta 79923 Score = 81.8 bits (41), Expect = 2e-12 Identities = 118/143 (82%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 281 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 340 ||||||||||||||||| || ||||||||| ||||||||| |||||| ||| ||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattactagc---tcc 80002 Query: 341 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 400 || || |||||||||||||| || || ||||| ||||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 401 ctgaggttgaatcatattatttt 423 |||||||||||||||| ||||| Sbjct: 80063 ttgaggttgaatcatatcatttt 80085
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 123 bits (62), Expect = 6e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 39 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 98 |||| |||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 60553 agtacttataatacttcgggagccaatgaaactattttcgtgaaattcaattgtctcaat 60612 Query: 99 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 158 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 60613 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 60672 Query: 159 accgcagcattgtcatca 176 || || |||||||||||| Sbjct: 60673 acggctgcattgtcatca 60690 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 336 gctcctatgactcgaatacacatcaattttcgagctccact 376 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 60847 gctcctagaactcgaatacacattatttttcgggctccact 60887
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 117 bits (59), Expect = 4e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 954 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 1013 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 163 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||| ||| || Sbjct: 1014 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattacaactgc 1073 Query: 164 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 223 |||||| |||||||| | ||||||||||||| | ||| | || |||||| || || Sbjct: 1074 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtccg 1133 Query: 224 tacaattacagctcgaattacttcggatctttcta 258 |||||||||||||| || ||||| |||||||||| Sbjct: 1134 tacaattacagctctgatcacttctgatctttcta 1168 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 388 catttaaaagggtctgaggttgaatcatattatttt 423 |||||||| | || |||||||||||||||| ||||| Sbjct: 1296 catttaaatgagtttgaggttgaatcatatcatttt 1331
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Plus Query: 116 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 175 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 176 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 235 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 236 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 293 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 294 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 353 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 354 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 413 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 30839 Query: 414 atattatttt 423 |||| ||||| Sbjct: 30840 atatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Minus Query: 116 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 175 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 176 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 235 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 236 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 293 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 294 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 353 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 354 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 413 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 114664 Query: 414 atattatttt 423 |||| ||||| Sbjct: 114663 atatcatttt 114654
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 39 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 98 |||| |||||| ||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 58649 agtacttataagacttcgggagccaatgaaactattttagtgaaattcaattgtctcaat 58708 Query: 99 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 158 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 58709 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 58768 Query: 159 accgcagcattgtcatca 176 || || |||||||||||| Sbjct: 58769 acggctgcattgtcatca 58786 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 336 gctcctatgactcgaatacacatcaattttcgagctccact 376 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 58943 gctcctagaactcgaatacacattatttttcgggctccact 58983
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 103 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 583 Query: 104 ggcaatcgcgccaaaaactcgagttccttttgg 136 ||||||||| ||||||||||| ||||||||||| Sbjct: 584 ggcaatcgcaccaaaaactcgggttccttttgg 616
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgc 447 |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 568 catttaaaagggtctgaggttgaatcatatcatttttatttgaatctgttatttcaatgc 509 Query: 448 aaa 450 ||| Sbjct: 508 aaa 506
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 91.7 bits (46), Expect = 2e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 51 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 110 |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcaggagctaaagaaactattttagtaaaatttaagtctctcaattctctggcaact 41422 Query: 111 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 170 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41421 ggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatta 41362 Query: 171 tcatca 176 |||||| Sbjct: 41361 tcatca 41356 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 407 ||||||||||| | ||||||||||| || ||||| |||||||||||| | ||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaataagactgaggt 41128 Query: 408 tgaatcat 415 |||||||| Sbjct: 41127 tgaatcat 41120
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 3e-14 Identities = 113/136 (83%) Strand = Plus / Plus Query: 41 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 100 ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 76250 tatttataaaacttctggagctaacgaaactattttagtaaaattagattctcttaattc 76309 Query: 101 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 160 ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | ||| Sbjct: 76310 tctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaac 76369 Query: 161 cgcagcattgtcatca 176 || ||||| |||||| Sbjct: 76370 tgctgcattatcatca 76385 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 338 tcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaag 397 |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 398 ggtctgaggttgaatcat 415 || |||||||||||||| Sbjct: 76604 agtttgaggttgaatcat 76621 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 207 aattctttacatgtacgtacaattacagctc 237 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 220 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 270 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 85.7 bits (43), Expect = 1e-13 Identities = 114/135 (84%), Gaps = 2/135 (1%) Strand = Plus / Plus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 102 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| | Sbjct: 79910 tttataatacttcaggtgctaacgaaactattttagtaaaattagattcacgtaattc-t 79968 Query: 103 cg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 161 || |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79969 cgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataact 80028 Query: 162 gcagcattgtcatca 176 |||||||| |||||| Sbjct: 80029 gcagcattatcatca 80043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 351 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 410 |||||||| ||||| || ||||||||||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagtttgaggttga 80274 Query: 411 atcat 415 ||||| Sbjct: 80275 atcat 80279
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 395 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 209 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 265 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ccaaaaactcgagttccttt 133 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 395 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 209 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 265 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ccaaaaactcgagttccttt 133 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 81.8 bits (41), Expect = 2e-12 Identities = 112/135 (82%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 289 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 348 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 349 gaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggtt 408 |||||||||| |||| |||||| ||||| || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttgaggtt 117 Query: 409 gaatcatattatttt 423 ||||||||| ||||| Sbjct: 118 gaatcatatcatttt 132
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 79.8 bits (40), Expect = 9e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 43 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 94 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcaggagccaatgaaactattttagtaaaattgaattctct 5535 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||| |||| ||||||||| |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgtttgagg 5226 Query: 407 ttgaatcatatt 418 |||||||||||| Sbjct: 5225 ttgaatcatatt 5214
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 3e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 211 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 266 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 267 tggggcaatgcgtctttgattaca 290 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 98 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 157 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 158 aaccgcagcattgtcatc 175 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 347 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 406 |||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaataactttgagg 79772 Query: 407 ttgaatcat 415 ||||||||| Sbjct: 79773 ttgaatcat 79781 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 52 cttcaggagctaatgaaactattttggtaaaatt 85 ||||||||||||| || |||||||| |||||||| Sbjct: 79421 cttcaggagctaaagatactattttagtaaaatt 79454
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcatattatttt 423 |||||||||||||||||||||||||||||||||||| Sbjct: 561 catttaaaagggtctgaggttgaatcatattatttt 526
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 8e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 173 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 174 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 233 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 234 gctc 237 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgat 150 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 114 ccaaaaactcgagttccttttgggttgcctttttgat 150 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 67.9 bits (34), Expect = 3e-08 Identities = 108/130 (83%), Gaps = 2/130 (1%) Strand = Plus / Minus Query: 47 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 105 ||||||||| ||||| |||| ||||||||| || ||||| |||| ||||||||| ||| | Sbjct: 366 taatacttcgggagccaatggaactatttttgtgaaattaaattgtctcaattc-tcgag 308 Query: 106 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 165 ||| | |||||||||||||||||||| || || |||| |||||||| | ||| || | Sbjct: 307 caactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgctg 248 Query: 166 cattgtcatc 175 |||||||||| Sbjct: 247 cattgtcatc 238
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 65.9 bits (33), Expect = 1e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 281 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 340 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 341 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 400 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 401 ctgaggttgaatcatattatttt 423 |||||||||||||||| ||||| Sbjct: 1141 ttgaggttgaatcatatcatttt 1119
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcatattatttt 423 |||||||||||||||||||||||||||||| ||||| Sbjct: 533 catttaaaagggtctgaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 384 gctacatttaaaagggtctgaggttgaatcatattatttt 423 |||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtctgaggttgaatcatatcatttt 2010
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 345 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 395 |||||||||||||| ||||| ||||| |||||||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 51 acttcaggagctaatgaaactattttggtaaaatt 85 |||||||||||||| ||||| ||||| |||||||| Sbjct: 140167 acttcaggagctaaagaaacaatttttgtaaaatt 140201
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 79 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 121 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 351 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 410 |||||||| |||||||| ||||||||||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgtttgaggttga 16420 Query: 411 atcatatta 419 ||||||||| Sbjct: 16419 atcatatta 16411
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcata 416 ||||||||||||||||||||||||||||| Sbjct: 543 catttaaaagggtctgaggttgaatcata 515
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 395 |||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 395 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 ctttacatgtacgtacaattacagctcg 238 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcat 415 |||||||||||||||||||||||||||| Sbjct: 558 catttaaaagggtctgaggttgaatcat 531
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 395 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 ctttacatgtacgtacaattacagctcg 238 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 345 actcgaatacacatcaattttcgagctccactatt 379 |||||||||||||| ||||| |||||||||||||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 45 tataatacttcaggagctaatgaaactattttggtaaaatt 85 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 2041 tataatacttccggagctaaagaaataatttttgtaaaatt 2001 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 287 tacagcaacaataacatcaccaatacgagcata 319 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 70 ctattttggtaaaattcaattctctcaattc 100 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 345 actcgaatacacatcaattttcgagctccactatt 379 |||||||||||||| ||||| |||||||||||||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 287 tacagcaacaataacatcaccaatacgagcata 319 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 45 tataatacttcaggagctaatgaaactattttggtaaaatt 85 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 52181 tataatacttccggagctaaagaaataatttttgtaaaatt 52221
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 51 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 100 |||||||||||||| || ||||| || |||||||| |||||||| ||||| Sbjct: 5584 acttcaggagctaaagatactatcttagtaaaatttaattctcttaattc 5535 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 cgaatacacatcaattttcgagctccact 376 ||||||||||| ||||| ||||||||||| Sbjct: 5290 cgaatacacattaatttacgagctccact 5262
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 351 atacacatcaattttcgagctccactattgtctgctacatt 391 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 351 atacacatcaattttcgagctccactattgtctgctacatt 391 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 364 ttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 415 |||||||||||||||| || |||||||||||| | |||||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaataagattgaggttgaatcat 94442
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 295 caataacatcaccaatacgagcatatcgctgattaccagc 334 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 295 caataacatcaccaatacgagcatatcgctgattaccagc 334 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaa 411 |||||||||||||||||||||||| Sbjct: 523 catttaaaagggtctgaggttgaa 500
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 295 caataacatcaccaatacgagcatatcgctgattaccagc 334 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 285 attacagcaacaataacatcaccaatacgagcata 319 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 64 atgaaactattttggtaaaattcaatt 90 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 285 attacagcaacaataacatcaccaatacgagcata 319 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 285 attacagcaacaataacatcaccaatacgagcata 319 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 414 atattattttgatttcaatttgttatt 440 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>dbj|AB028608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9 Length = 43500 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 49 atacttcaggagctaatgaaactattt 75 |||| |||||||||||||||||||||| Sbjct: 22874 atacctcaggagctaatgaaactattt 22900
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 389 atttaaaagggtctgaggttgaa 411 ||||||||||||||||||||||| Sbjct: 65424 atttaaaagggtctgaggttgaa 65402
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 450 aaggatgaaagaaatattgtctttcc 475 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 416 attattttgatttcaatttgtt 437 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.47 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcatat 417 |||||||||||| ||||||||||||||||| Sbjct: 528 catttaaaaggg-ctgaggttgaatcatat 500
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.47 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 388 catttaaaagggtctgaggttgaatcatat 417 |||||||||||| ||||||||||||||||| Sbjct: 545 catttaaaaggg-ctgaggttgaatcatat 517
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 450 aaggatgaaagaaatattgtctttcc 475 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 ccttttgggttgcctttttga 149 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 44 ttataatacttcaggagctaatgaaactatttt 76 |||||| ||||||||||||| |||||| ||||| Sbjct: 352059 ttataaaacttcaggagctagtgaaacgatttt 352027
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 439 tttcaatgcaaaaggatgaaagaaa 463 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 atgaaactattttggtaaaat 84 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tgtctttccagaaagaaaaac 487 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 acagcaacaataacatcacca 308 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 456 gaaagaaatattgtctttccagaaa 480 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 atttcaatttgttatttcaat 445 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 aatgaaactattttggtaaaa 83 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactatttt 76 ||||||||||||||| || |||||||| ||||| Sbjct: 109779 ttataatacttcaggtgccaatgaaacgatttt 109811
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 426 tttcaatttgttatttcaatgcaaa 450 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete genome Length = 195867 Score = 42.1 bits (21), Expect = 1.9 Identities = 57/69 (82%) Strand = Plus / Minus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 407 ||||| |||||||||||| || || ||||| || ||||||||||||| || |||||| Sbjct: 31433 cgaatgcacatcaatttttttgcaccgctattatcagctacatttaaaatagtttgaggt 31374 Query: 408 tgaatcata 416 |||||||| Sbjct: 31373 cgaatcata 31365
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 aaaggatgaaagaaatattgt 469 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 ttattttgatttcaatttgtt 437 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 44 ttataatacttcaggagctaatgaaactatttt 76 ||||||||||||||| || |||||||| ||||| Sbjct: 156967 ttataatacttcaggtgccaatgaaacgatttt 156935 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 tattttgatttcaatttgttattt 441 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 attttggtaaaattcaattct 92 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 taaaattcaattctctcaatt 99 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 atttcaatttgttatttcaat 445 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 426 tttcaatttgttatttcaatgcaaa 450 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 44 ttataatacttcaggagctaatgaaactatttt 76 ||||||||||||||| || |||||||| ||||| Sbjct: 1801391 ttataatacttcaggtgccaatgaaacgatttt 1801423
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 atgaaactattttggtaaaat 84 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctac 388 ||||||||||| | ||||| ||| |||||||| |||||||| Sbjct: 100999 cgaatacacattatttttctagcgccactattatctgctac 101039
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 acagcaacaataacatcacca 308 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ttattttgatttcaatttgtt 437 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cagcaacaataacatcacca 308 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cagcaacaataacatcacca 308 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 tattttgatttcaatttgttattt 441 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tctttccagaaagaaaaacc 488 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tactagtatttataatactt 54 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 attttgatttcaatttgtta 438 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tctttgattacagcaacaat 298 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 tattgtctgctacatttaaa 395 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tctgctacatttaaaagggt 400 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gtcttcgcatttgaattctt 213 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tgattacagcaacaataaca 302 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 aaatattgtctttccagaaa 480 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tctttccagaaagaaaaacc 488 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 tcaatgcaaaaggatgaaag 460 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 atgcaaaaggatgaaagaaatatt 467 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ttcctcggcaatcgcgccaa 117 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 aagaaatattgtctttccag 477 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 aatcatattattttgatttc 429 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 accaatacgagcatatcgct 324 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 atttcaatttgttatttcaa 444 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 catttgaattctttacatgt 220 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 atgcaaaaggatgaaagaaatatt 467 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 caattataaccgcagcattgtcat 174 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cagcaacaataacatcacca 308 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 taatgaaactattttggtaaaatt 85 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatt 391 ||||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 15771 cgaatacacattatttttttagcgccactattatctgctacatt 15814
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cagcaacaataacatcacca 308 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 catttgaattctttacatgt 220 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 atgcaaaaggatgaaagaaatatt 467 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 tattttgatttcaatttgttattt 441 ||||||| |||||||||||||||| Sbjct: 28243 tattttgttttcaatttgttattt 28266
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ttcctcggcaatcgcgccaa 117 |||||||||||||||||||| Sbjct: 4645443 ttcctcggcaatcgcgccaa 4645424
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 40.1 bits (20), Expect = 7.3 Identities = 59/72 (81%) Strand = Plus / Minus Query: 351 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 410 |||||||| | |||| ||||||||| || || |||||| ||||| ||||||| |||| Sbjct: 103777 atacacattatttttttagctccactgttatcagctacagttaaataagtctgagtttga 103718 Query: 411 atcatattattt 422 ||||||| |||| Sbjct: 103717 atcatataattt 103706
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ttcctcggcaatcgcgccaa 117 |||||||||||||||||||| Sbjct: 4620428 ttcctcggcaatcgcgccaa 4620409
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 attttggtaaaattcaattc 91 |||||||||||||||||||| Sbjct: 2952252 attttggtaaaattcaattc 2952271
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 tctgctacatttaaaagggt 400 |||||||||||||||||||| Sbjct: 141843 tctgctacatttaaaagggt 141824
>gb|AC158600.17| Mus musculus 10 BAC RP24-211K19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tactagtatttataatactt 54 |||||||||||||||||||| Sbjct: 72121 tactagtatttataatactt 72140 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tactagtatttataatactt 54 |||||||||||||||||||| Sbjct: 19820 tactagtatttataatactt 19801
>emb|CR385050.10| Zebrafish DNA sequence from clone DKEY-22I16 in linkage group 1, complete sequence Length = 145760 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 tattttgatttcaatttgtt 437 |||||||||||||||||||| Sbjct: 109311 tattttgatttcaatttgtt 109292
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 40.1 bits (20), Expect = 7.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 348 cgaatacacatcaattttcgagctccactattgtctgctacatt 391 ||||||||||| | ||| || ||||||||||| ||||| ||||| Sbjct: 84071 cgaatacacataattttacgggctccactattatctgcaacatt 84114 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 207 aattctttacatgtacgtacaattacagctcg 238 ||||||||||| || ||||| ||||||||||| Sbjct: 83933 aattctttacaagtgcgtactattacagctcg 83964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,807,884 Number of Sequences: 3902068 Number of extensions: 5807884 Number of successful extensions: 122470 Number of sequences better than 10.0: 234 Number of HSP's better than 10.0 without gapping: 250 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 119870 Number of HSP's gapped (non-prelim): 2517 length of query: 542 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 519 effective length of database: 17,143,297,704 effective search space: 8897371508376 effective search space used: 8897371508376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
