ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12o19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUTS_PROMM (Q7V978) DNA mismatch repair protein mutS 30 5.8
2MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domai... 30 7.6
3MB21_ARATH (O80998) Myrosinase-binding protein-like At2g25980 29 10.0

>MUTS_PROMM (Q7V978) DNA mismatch repair protein mutS|
          Length = 927

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 313 DMKHRQTFLHFGKGRKLTDRTTIQMGTAIYISVNLGMIIGE--ASEFTDRTTTAFHFHNL 486
           +M      LH    R L     I  GTA +  +++   + E  A++   RT  A H+H L
Sbjct: 784 EMAETANILHHASDRSLVLLDEIGRGTATFDGLSIAWAVSEHLATDLRSRTVFATHYHEL 843



to top

>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1229

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = -3

Query: 329  CRCFIS*VGSARSSGC---LYGPGRENACTCL 243
            CRC     GS    GC    YGPG E  C CL
Sbjct: 956  CRCPPGFTGSGCEQGCPPGRYGPGCEQLCGCL 987



to top

>MB21_ARATH (O80998) Myrosinase-binding protein-like At2g25980|
          Length = 449

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 277 YKQPLDRADPTYDMKHRQTFLHFGKGRKL 363
           +K   DR  PTY  K  +TF+   KGR L
Sbjct: 246 FKTSKDRTSPTYGRKSERTFVFESKGRAL 274


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,798,461
Number of Sequences: 219361
Number of extensions: 1849551
Number of successful extensions: 3502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3501
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top