ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13d15 |
|---|---|
| Clone Library Name | barley_pub |
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 34.7 bits (78), Expect = 0.21 Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 28/119 (23%) Frame = +2 Query: 170 PGGDTRPQRHRSAHSPGCCSPPAGGVVAGTH--LRSTIRDSSTTDW-QSRHVRTAKASRG 340 P +PQR H+PG S VAG+ LR DS+ W + R A + G Sbjct: 100 PQPQPQPQRPSVCHTPGAGSSEPVAAVAGSGEALRGGEEDSAAAAWGRVERPRAASSGGG 159 Query: 341 S--CQTGHRWWRM---CP------ARRTASPSPP--------------GEGSCRRPSST 442 S C G R R CP + SP+PP G SC P ST Sbjct: 160 SDACPEGPRAVRRPCGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGRASCSAPGST 218
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 32.7 bits (73), Expect = 0.81 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Frame = -3 Query: 563 EMSSVGSPGRFSRGSLADPEMMASASTPGR---FNSTDRYYGDGYSRAYDMSPLQGAREM 393 +MS G G +SR AS S PG ++ ++ +G G S+ PL M Sbjct: 830 QMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLG---RM 886 Query: 392 QFSSLDTYATNGGLSDMSPSKPWLYGHGG 306 + + G +S M+PS P + GG Sbjct: 887 PSAGMQNRPFPGNMSSMTPSSPGMSQQGG 915
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 31.2 bits (69), Expect = 2.3 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -3 Query: 359 GGLSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSN 219 GG+SDMSP G+ A+PS+ A G P QH Q G +N Sbjct: 700 GGVSDMSPYPHHYPGYSYQASPSN------GAPGTPGQHGQYGSGAN 740
>Y308_MYCPN (P75472) Hypothetical protein MPN308 (F10_orf565)| Length = 565 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +1 Query: 256 NPFALNDPRFIDDGLAEPPCPYSQGFEGLMSDRPPLVAYV 375 N FAL PRF++D LA+ P+ + +G ++ P+V + Sbjct: 332 NGFALWAPRFVEDLLAQGDLPFWKQVQGRLNPNKPVVGVI 371
>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine zipper protein| ATHB-10) (HD-ZIP protein ATHB-10) Length = 745 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 128 AAASYHRITSVRCSPGGDTRPQRHRSAHSPGCCSPPAGGVVAGT 259 AA+SYH+ T + G D R ++ H PG P G +V + Sbjct: 526 AASSYHQWTKITTKTGQDMRVSSRKNLHDPG---EPTGVIVCAS 566
>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1 (EC| 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 30.8 bits (68), Expect = 3.1 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 22/117 (18%) Frame = -3 Query: 488 STPGRFNSTDRYY-GDGYSRAYDMSP----------LQGAREMQFS---SLDTYATNGG- 354 STPG +T+R + GD + D P L+ AR Q S S++ + G Sbjct: 850 STPGEPEATERSHPGDFCPPSKDGDPSGPRATNDLVLRRARHQQLSGDLSVEKRPSRTGG 909 Query: 353 -------LSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSNLVSGL 204 + +S P + HGGS S M+ SLS+N + DYS VSGL Sbjct: 910 KVIKSASATALSVMIPAVDPHGGSPLASPMSPRSLSSNPSSRDSSPSRDYSPAVSGL 966
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 30.4 bits (67), Expect = 4.0 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 9/97 (9%) Frame = +2 Query: 317 RTAKASRGSCQTGHRWWRMCPARRTASPSPPGEGSCRRPSSTH--RHSTGQWN*TDRECW 490 R +K +RG Q +W P R + +P G S RP S H H T + W Sbjct: 292 RCSKEARGDMQASTQW----PLRGVKTETPQGHDSSGRPDSRHPSPHPTSDLLPWTDQAW 347 Query: 491 QKPSSPDLPGCLC*TAQDC-------RQKTSRNLPSS 580 + +S C + C R+K+ + PSS Sbjct: 348 RIAASSSAVVCSPFPMEACSHKHHDLREKSHYSPPSS 384
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -3 Query: 362 NGGLSDMSPSKPWLYGHGGSAN--PSSMNLGSLSANG 258 N G+ ++S S P G GG A P+S N+ SLSA G Sbjct: 83 NPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMG 119
>GPV_RAT (O08770) Platelet glycoprotein V precursor (GPV) (CD42D antigen)| Length = 567 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 353 GHRWWRMCPARRTASPSPPGEGSCRRPSSTHRHSTGQ 463 G +W CP+ R P PP E + + P T R ++ Q Sbjct: 468 GDQW---CPSSRGLPPDPPTENALKAPDPTQRPNSSQ 501
>UCP3_SCHPO (O74345) UBA domain-containing protein 3| Length = 601 Score = 30.0 bits (66), Expect = 5.2 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Frame = -3 Query: 509 PEMMASAST---PGRFNSTDRYYGDGYSRAYDMSPLQGAREMQFSSLDTYATNGGLSDMS 339 P M S +T P + Y + S + +PLQ AR + Y TN +S S Sbjct: 306 PSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSSPS 365 Query: 338 PSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSNLVSGL 204 + P+ S+ N + + G+P + + Y N G+ Sbjct: 366 VTNPFF-----DVGSSTQNASLMGSTGYPSSANNV-YYENSYQGV 404
>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 572 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +1 Query: 79 HLLQQALFSSTVRLYTGCSIISSHYQRPLFAWRRYAAAETPFSPLTRLL*SPSWWCCCGN 258 HLL ALF + + + G I + + + R+ + F PLT + + S C CG Sbjct: 295 HLLTHALFKALLFMCAGSMIHNLRDSQDI----RFMGSIIHFMPLTSICFNVSSLCLCGM 350 Query: 259 PF 264 PF Sbjct: 351 PF 352
>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)| Length = 220 Score = 29.6 bits (65), Expect = 6.8 Identities = 35/135 (25%), Positives = 54/135 (40%) Frame = -3 Query: 587 SRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQ 408 S GN + S SS S G GSL+ +S+S +S+ R DG S + S Sbjct: 65 SAGNSSGS--SSSNSSGSSGIGSLSRNSSSSSSSQAAGSSSSRRVSADGSSSSSSASN-S 121 Query: 407 GAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGD 228 A + SS +T +G ++ S S +A S+ ++A+G Sbjct: 122 AAAQNSASSSETINADGSENESSSSS------SSAAQNSATRSQVINADGSQSSSSSSSS 175 Query: 227 YSNLVSGLNGVSAAA 183 SN S + S +A Sbjct: 176 ASNQASATSSSSVSA 190
>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor| Length = 632 Score = 29.6 bits (65), Expect = 6.8 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Frame = -3 Query: 578 NLADSEMSSVGSPGRFSRGSLADPEM----MASASTPGR-FNSTDRYYGDGYSRAYDMSP 414 N + E V S R+ R S D + +TP + FNS G + + +P Sbjct: 143 NYTEEENFPVNSFRRYGRDSPHDNQFDNYGAPGGNTPVQSFNSYSTNTPGGSGQFTNYAP 202 Query: 413 LQGAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQL 234 ++ F+S + T GG D YG+ G+A S NG Q Sbjct: 203 GSNVPDLHFTSYSDHGT-GGEQDFKS-----YGNDGNAGQQSFKSYGKDGNGADSQFTTY 256 Query: 233 GDYSNL 216 G+ +N+ Sbjct: 257 GNNTNV 262
>RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = -3 Query: 587 SRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQ 408 + G ++ +G P R + G + + + +A T G + T + G SR +DM Q Sbjct: 1051 ANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQ 1110 Query: 407 GARE 396 G E Sbjct: 1111 GLPE 1114
>RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = -3 Query: 587 SRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQ 408 + G ++ +G P R + G + + + +A T G + T + G SR +DM Q Sbjct: 1051 ANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQ 1110 Query: 407 GARE 396 G E Sbjct: 1111 GLPE 1114
>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = -3 Query: 587 SRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQ 408 + G ++ +G P R + G + + + +A T G + T + G SR +DM Q Sbjct: 1051 ANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQ 1110 Query: 407 GARE 396 G E Sbjct: 1111 GLPE 1114
>LCE1A_HUMAN (Q5T7P2) Late cornified envelope protein 1A (Late envelope protein| 1) Length = 110 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 8/35 (22%) Frame = +2 Query: 164 CSPGGD----TRPQRHRS----AHSPGCCSPPAGG 244 CS GG + +RHRS S GCCS P+GG Sbjct: 60 CSSGGGGCCLSHHRRHRSHRHRLQSSGCCSQPSGG 94
>DCR1C_BRARE (Q5RGE5) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C| protein) Length = 639 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 380 ARRTASPSPPGEGSCRRPSSTHRHSTGQWN*TDRECWQK 496 A +T + +PP S +P S H HS + + CW+K Sbjct: 466 AEQTPAAAPP-PSSTEKPCSKHTHSDSSLTSSTQPCWEK 503 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,793,908 Number of Sequences: 219361 Number of extensions: 2528753 Number of successful extensions: 7714 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 7174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7710 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
