>ref|XM_476397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3884

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 183  tgcactcctacttgaggtttctgcattgc 211
            |||| |||||||| |||||||||||||||
Sbjct: 3823 tgcattcctacttcaggtttctgcattgc 3795

>gb|AC161228.7| Mus musculus chromosome 3, clone RP24-77I5, complete sequence
          Length = 222551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   gcctatgtacctcctctcttc 271
             |||||||||||||||||||||
Sbjct: 61657 gcctatgtacctcctctcttc 61637

>gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complete sequence
          Length = 200088

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   gcctatgtacctcctctcttc 271
             |||||||||||||||||||||
Sbjct: 12071 gcctatgtacctcctctcttc 12091

>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 119     ctggtttaaaaacaactatat 139
               |||||||||||||||||||||
Sbjct: 1450904 ctggtttaaaaacaactatat 1450924

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 183    tgcactcctacttgaggtttctgcattgc 211
              |||| |||||||| |||||||||||||||
Sbjct: 520855 tgcattcctacttcaggtttctgcattgc 520827

>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0585H11
          Length = 149371

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 183    tgcactcctacttgaggtttctgcattgc 211
              |||| |||||||| |||||||||||||||
Sbjct: 123019 tgcattcctacttcaggtttctgcattgc 122991

>dbj|AK070584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062J01, full
            insert sequence
          Length = 3885

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 183  tgcactcctacttgaggtttctgcattgc 211
            |||| |||||||| |||||||||||||||
Sbjct: 3824 tgcattcctacttcaggtttctgcattgc 3796

>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1567_G09
          Length = 121388

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 183   tgcactcctacttgaggtttctgcattgc 211
             |||| |||||||| |||||||||||||||
Sbjct: 74767 tgcattcctacttcaggtttctgcattgc 74739

>gb|AC140352.3| Mus musculus BAC clone RP23-223L7 from chromosome 18, complete sequence
          Length = 165504

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   aagttaacatttggaataacttgt 165
             |||||||| |||||||||||||||
Sbjct: 98159 aagttaacctttggaataacttgt 98136

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    tttctgcattgcccacactc 219
              ||||||||||||||||||||
Sbjct: 567219 tttctgcattgcccacactc 567238

>gb|AC006218.4| Arabidopsis thaliana chromosome 2 clone F17L24 map GPC6, complete
             sequence
          Length = 90161

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   tttaaaaacaactatatata 142
             ||||||||||||||||||||
Sbjct: 43668 tttaaaaacaactatatata 43649

>emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in linkage group 2, complete
              sequence
          Length = 155396

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    atgtctggtttaaaaacaac 134
              ||||||||||||||||||||
Sbjct: 118776 atgtctggtttaaaaacaac 118757

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 123      tttaaaaacaactatatataagtt 146
                |||||||| |||||||||||||||
Sbjct: 26332508 tttaaaaaaaactatatataagtt 26332531

>emb|AL592214.14| Mouse DNA sequence from clone RP23-212I24 on chromosome 1, complete
              sequence
          Length = 194720

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tttaaaaacaactatatata 142
              ||||||||||||||||||||
Sbjct: 173707 tttaaaaacaactatatata 173726

>gb|AC127285.4| Mus musculus BAC clone RP23-336P20 from chromosome 8, complete sequence
          Length = 232127

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   gatgtctggtttaaaaacaa 133
             ||||||||||||||||||||
Sbjct: 85925 gatgtctggtttaaaaacaa 85906

>emb|BX005065.10| Zebrafish DNA sequence from clone CH211-163B2 in linkage group 8,
              complete sequence
          Length = 175016

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tttaaaaacaactatatata 142
              ||||||||||||||||||||
Sbjct: 154946 tttaaaaacaactatatata 154965

>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085J13
          Length = 130185

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 123   tttaaaaacaactatatataagtt 146
             |||||||| |||||||||||||||
Sbjct: 30235 tttaaaaaaaactatatataagtt 30258

>gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, complete sequence
          Length = 213575

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    tctcttcagacaagccaaat 284
              ||||||||||||||||||||
Sbjct: 140112 tctcttcagacaagccaaat 140131

>dbj|AK116323.1| Ciona intestinalis cDNA, clone:citb033a05, full insert sequence
          Length = 1367

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 123  tttaaaaacaactatatataagtt 146
            ||||||||||| ||||||||||||
Sbjct: 1294 tttaaaaacaaatatatataagtt 1271

>gb|AC159269.3| Mus musculus BAC clone RP23-426N14 from chromosome 12, complete
             sequence
          Length = 184137

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   acaactatatataagttaacattt 153
             |||| |||||||||||||||||||
Sbjct: 82301 acaaatatatataagttaacattt 82324

>dbj|AB039578.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 949
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039577.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 807
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039576.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 806
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039575.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 667
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039572.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 3183
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039570.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 2645
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039569.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 2644
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039567.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 247
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039564.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 2380
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039559.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:NCPPB 1689
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039543.1| Pseudomonas marginalis rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:HRI 20
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039542.1| Pseudomonas marginata rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:HRI 17
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429

>dbj|AB039536.1| Pseudomonas fluorescens rpoD gene for DNA-directed RNA polymerase
           subunit D, partial cds, strain:ATCC 17816
          Length = 807

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagctcagccagcgccagc 248
           ||||||||||||||||||||
Sbjct: 448 acagctcagccagcgccagc 429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,427,932
Number of Sequences: 3902068
Number of extensions: 2427932
Number of successful extensions: 45459
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45375
Number of HSP's gapped (non-prelim): 84
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)