ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018021.1| Zea mays clone EL01N0529B09.c mRNA sequence Length = 1270 Score = 149 bits (75), Expect = 1e-32 Identities = 162/191 (84%) Strand = Plus / Minus Query: 359 tcctcctcgtcgcgcgggttctcaagggtggtaacgtgctccttgaaacgagccgcggct 418 |||||||||| ||||| ||||||||| || ||||| ||||||||||||||||||||| Sbjct: 790 tcctcctcgttatgcggggtctcaagggcagtgacgtgatccttgaaacgagccgcggct 731 Query: 419 tcctccctctcgtctaacttgcccaggtggttatacgccatggccttcagatagtacacc 478 ||||||||||| || | |||||| || ||||| || ||||| ||||||||||||||| || Sbjct: 730 tcctccctctcatcaagcttgccgagatggttgtatgccattgccttcagatagtacgcc 671 Query: 479 tctgtcgccatctcgtggtactccaaaacatgcagatcttcagctgcttgatttagaggg 538 |||| |||||||||||||||||||| | ||||| ||||||| ||||| || ||||| Sbjct: 670 tctgctgccatctcgtggtactccaatgcttgcaggtcttcagtggcttggttcagagga 611 Query: 539 tccagaacagc 549 |||| |||||| Sbjct: 610 tccaaaacagc 600
>gb|BC105929.1| Homo sapiens chromosome 10 open reading frame 137, mRNA (cDNA clone IMAGE:40028898), complete cds Length = 4123 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 1015 agcactgggatcttcagaaactgaa 991
>ref|NM_015608.2| Homo sapiens chromosome 10 open reading frame 137 (C10orf137), mRNA Length = 4596 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 1076 agcactgggatcttcagaaactgaa 1052
>gb|BC028715.2| Homo sapiens chromosome 10 open reading frame 137, mRNA (cDNA clone IMAGE:4838997), with apparent retained intron Length = 4181 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 1060 agcactgggatcttcagaaactgaa 1036
>emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chromosome 10 Contains a aldolase A, fructose-bisphosphate pseudogene 2, four novel genes, the gene for erythroid differentiation-related factor 1 (EDRF1), the 3' end of the MMP21 gene for matrix metalloproteinase 21 and one CpG island, complete sequence Length = 174530 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 133029 agcactgggatcttcagaaactgaa 133005
>gb|BC026172.1| Homo sapiens chromosome 10 open reading frame 137, mRNA (cDNA clone MGC:27035 IMAGE:4838438), complete cds Length = 4255 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 1077 agcactgggatcttcagaaactgaa 1053
>emb|CR859321.1| Pongo pygmaeus mRNA; cDNA DKFZp459D1227 (from clone DKFZp459D1227) Length = 4414 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 882 agcactgggatcttcagaaactgaa 858
>dbj|AK091507.1| Homo sapiens cDNA FLJ34188 fis, clone FCBBF3017396, moderately similar to Erythroid differentiation-related factor 1 Length = 3530 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 888 agcactgggatcttcagaaactgaa 864
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 agccgcggcttcctccctctc 429 ||||||||||||||||||||| Sbjct: 24156647 agccgcggcttcctccctctc 24156627 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 394 gtgctccttgaaacgagccgcggcttcctccctctc 429 ||||||||||||| ||| || |||||||||||||| Sbjct: 26804826 gtgctccttgaaagaagctgcagcttcctccctctc 26804861
>emb|BX648348.1|HSM808496 Homo sapiens mRNA; cDNA DKFZp686K23170 (from clone DKFZp686K23170) Length = 4218 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 889 agcactgggatcttcagaaactgaa 865
>emb|AL844869.5| Mouse DNA sequence from clone RP23-437K18 on chromosome X, complete sequence Length = 207432 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 atatacattcattcagcaata 79 ||||||||||||||||||||| Sbjct: 25844 atatacattcattcagcaata 25864
>dbj|AK071485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095G02, full insert sequence Length = 1997 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 agccgcggcttcctccctctc 429 ||||||||||||||||||||| Sbjct: 706 agccgcggcttcctccctctc 726
>dbj|AB071124.1| Macaca fascicularis testis cDNA clone:QtsA-19445, full insert sequence Length = 2030 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 870 agcactgggatcttcagaaactgaa 846
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 agccgcggcttcctccctctc 429 ||||||||||||||||||||| Sbjct: 24084853 agccgcggcttcctccctctc 24084833 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 394 gtgctccttgaaacgagccgcggcttcctccctctc 429 ||||||||||||| ||| || |||||||||||||| Sbjct: 26732996 gtgctccttgaaagaagctgcagcttcctccctctc 26733031
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 agccgcggcttcctccctctc 429 ||||||||||||||||||||| Sbjct: 41338 agccgcggcttcctccctctc 41318
>gb|BC107479.1| Homo sapiens chromosome 10 open reading frame 137, mRNA (cDNA clone MGC:125704 IMAGE:40028896), complete cds Length = 4128 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactgaa 571 ||||| ||||||||||||||||||| Sbjct: 1015 agcactgggatcttcagaaactgaa 991
>gb|AC154728.2| Mus musculus BAC clone RP24-377E6 from chromosome 14, complete sequence Length = 187028 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 ttcagaaactgaaaattctg 578 |||||||||||||||||||| Sbjct: 129623 ttcagaaactgaaaattctg 129642
>ref|XM_954827.1| Neurospora crassa OR74A hypothetical protein (NCU02276.1) partial mRNA Length = 3519 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gaggcgactttgcagaggaa 222 |||||||||||||||||||| Sbjct: 2831 gaggcgactttgcagaggaa 2850
>ref|XM_331051.1| Neurospora crassa OR74A hypothetical protein (NCU02276.1) partial mRNA Length = 3519 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gaggcgactttgcagaggaa 222 |||||||||||||||||||| Sbjct: 2831 gaggcgactttgcagaggaa 2850
>gb|AC119968.9| Mus musculus chromosome 8, clone RP24-473C10, complete sequence Length = 202850 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 554 ggatcttcagaaactgaaaattct 577 ||||||||||||||||| |||||| Sbjct: 143973 ggatcttcagaaactgacaattct 143996
>emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in linkage group 17, complete sequence Length = 155951 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gactgatatacattcattca 73 |||||||||||||||||||| Sbjct: 96565 gactgatatacattcattca 96584
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 cttgatttagagggtccaga 544 |||||||||||||||||||| Sbjct: 924418 cttgatttagagggtccaga 924399
>emb|AL354856.9| Human DNA sequence from clone RP11-290P3 on chromosome 6, complete sequence Length = 113146 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 atcttcagctgcttgattta 533 |||||||||||||||||||| Sbjct: 11381 atcttcagctgcttgattta 11400
>emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287B20 on chromosome 20 Contains part of the gene for KIAA1272 for a protein similar to rat tulip proteins 1 and 2, complete sequence Length = 168545 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 atatacattcattcagcaat 78 |||||||||||||||||||| Sbjct: 45473 atatacattcattcagcaat 45454
>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24 Length = 107482 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gaggcgactttgcagaggaa 222 |||||||||||||||||||| Sbjct: 16886 gaggcgactttgcagaggaa 16905
>gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-219K14, complete sequence Length = 223678 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 ttgcagaggaagtcatggaaggag 235 ||||||||||||||| |||||||| Sbjct: 214779 ttgcagaggaagtcaaggaaggag 214756
>gb|AF368158.1| Callithrix pygmaea lysozyme gene, intron 3 and partial cds Length = 1265 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 183 aaaattctggatcagttaaa 164
>gb|AF368157.1| Callithrix jacchus lysozyme gene, intron 3 and partial cds Length = 1279 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 183 aaaattctggatcagttaaa 164
>gb|AF368156.1| Callimico goeldii lysozyme gene, intron 3 and partial cds Length = 942 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 241 aaaattctggatcagttaaa 222
>gb|AF368153.1| Ateles fusciceps lysozyme gene, intron 3 and partial cds Length = 921 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 242 aaaattctggatcagttaaa 223
>gb|AF489264.1| Saimiri sciureus lysozyme gene, intron 3 and partial cds Length = 927 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 242 aaaattctggatcagttaaa 223
>gb|AF489263.1| Aotus azarai lysozyme gene, intron 3 and partial cds Length = 930 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 242 aaaattctggatcagttaaa 223
>gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, complete sequence Length = 172415 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gaccacccagttgttcttcc 128 |||||||||||||||||||| Sbjct: 77514 gaccacccagttgttcttcc 77533
>gb|AC008170.2| Homo sapiens BAC clone RP11-257N21 from 2, complete sequence Length = 192341 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 agtgctgaaattcagccagt 169 |||||||||||||||||||| Sbjct: 31540 agtgctgaaattcagccagt 31521
>gb|AC124781.4| Homo sapiens BAC clone RP11-219M8 from 7, complete sequence Length = 192653 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 gccgcggcttcctccctctc 429 |||||||||||||||||||| Sbjct: 64995 gccgcggcttcctccctctc 64976
>ref|XM_219414.3| PREDICTED: Rattus norvegicus similar to erythroid differentiation-related factor 1 (predicted) (LOC309069), mRNA Length = 3587 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 agcacagggatcttcagaaactga 570 ||||| |||||||||||||||||| Sbjct: 794 agcactgggatcttcagaaactga 771
>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence Length = 160764 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 ttcagaaactgaaaattctg 578 |||||||||||||||||||| Sbjct: 52283 ttcagaaactgaaaattctg 52264
>gb|AC149887.2| Xenopus tropicalis clone ISB-146F11, complete sequence Length = 91514 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cagtgctgaaattcagccagtgtg 172 ||||||| |||||||||||||||| Sbjct: 4714 cagtgcttaaattcagccagtgtg 4691
>emb|BX324138.6| Zebrafish DNA sequence from clone CH211-127F10 in linkage group 18, complete sequence Length = 173169 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 gaaactgaaaattctggatc 582 |||||||||||||||||||| Sbjct: 106707 gaaactgaaaattctggatc 106688
>emb|CT573340.5| Zebrafish DNA sequence from clone RP71-1M22 in linkage group 18, complete sequence Length = 30343 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 gaaactgaaaattctggatc 582 |||||||||||||||||||| Sbjct: 27889 gaaactgaaaattctggatc 27908
>emb|CR388073.11| Zebrafish DNA sequence from clone CH211-197K16 in linkage group 25, complete sequence Length = 131786 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 ctctgtcgccatctcgtggt 497 |||||||||||||||||||| Sbjct: 46153 ctctgtcgccatctcgtggt 46172
>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete sequence Length = 179661 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gtgctgaaattcagccagtg 170 |||||||||||||||||||| Sbjct: 172631 gtgctgaaattcagccagtg 172612
>emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb0016P08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142370 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 394 gtgctccttgaaacgagccgcggcttcctccctctc 429 ||||||||||||| ||| || |||||||||||||| Sbjct: 8793 gtgctccttgaaagaagctgcagcttcctccctctc 8828
>emb|AL929378.13| Zebrafish DNA sequence from clone CH211-169B18, complete sequence Length = 169874 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 agaaactgaaaattctggat 581 |||||||||||||||||||| Sbjct: 132603 agaaactgaaaattctggat 132622
>gb|U76951.1|ANLZM3 Allenopithecus nigroviridis lysozyme c precursor (LZM) gene, exons 3 and 4 and complete cds Length = 1008 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaattctggatcagttaaa 589 |||||||||||||||||||| Sbjct: 261 aaaattctggatcagttaaa 242
>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete sequence Length = 216754 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 atcttcagaaactgaaaatt 575 |||||||||||||||||||| Sbjct: 78778 atcttcagaaactgaaaatt 78759
>emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-244E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157827 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 atatacattcattcagcaat 78 |||||||||||||||||||| Sbjct: 47993 atatacattcattcagcaat 48012 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,174,610 Number of Sequences: 3902068 Number of extensions: 5174610 Number of successful extensions: 91293 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91117 Number of HSP's gapped (non-prelim): 176 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
