ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104371.1| Zea mays PCO121406 mRNA sequence 230 4e-57
2gb|AY111082.1| Zea mays CL35819_1 mRNA sequence 202 9e-49
3ref|XM_550488.1| Oryza sativa (japonica cultivar-group), mRNA 90 9e-15
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
5dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 90 9e-15
6dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
7dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
8dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
9dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
10gb|AC183492.1| Brassica oleracea Contig G, complete sequence 62 2e-06
11emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 54 5e-04
12emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 54 5e-04
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
14dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
15gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence 52 0.002
16gb|AY105917.1| Zea mays PCO144852 mRNA sequence 44 0.50
17gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 42 2.0
18gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 2.0
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.0
20gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence 42 2.0
21emb|AL161550.2|ATCHRIV50 Arabidopsis thaliana DNA chromosome 4, ... 42 2.0
22emb|AL022580.1|ATT5K18 Arabidopsis thaliana DNA chromosome 4, BA... 42 2.0
23emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in ... 42 2.0
24gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold 42 2.0
25gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 42 2.0
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
27gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33... 42 2.0
28ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA 42 2.0
29gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 42 2.0
30dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
31emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 42 2.0
32dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 42 2.0
33dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, compl... 42 2.0
34gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 7.8
35gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome... 40 7.8
36gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, com... 40 7.8
37gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 7.8
38ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 7.8
39gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 7.8
40ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase ... 40 7.8
41gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete s... 40 7.8
42gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.8
43emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.8
44emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in... 40 7.8
45emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chr... 40 7.8
46emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 ... 40 7.8
47dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.8
48gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (ni... 40 7.8
49gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS... 40 7.8
50emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in ... 40 7.8
51gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, co... 40 7.8
52gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, com... 40 7.8
53gb|AC084193.5| Homo sapiens BAC clone RP11-545M11 from 2, comple... 40 7.8
54gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cance... 40 7.8
55emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in... 40 7.8
56emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in... 40 7.8
57emb|CR381551.19| Zebrafish DNA sequence from clone DKEY-203A12 i... 40 7.8
58emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in ... 40 7.8
59gb|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 ma... 40 7.8
60dbj|AP001102.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.8
61dbj|AP000811.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.8
62gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome... 40 7.8
63gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome 40 7.8
64emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chr... 40 7.8
65emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section... 40 7.8 
>gb|AY104371.1| Zea mays PCO121406 mRNA sequence
          Length = 1266

 Score =  230 bits (116), Expect = 4e-57
 Identities = 176/196 (89%)
 Strand = Plus / Minus

                                                                       
Query: 376 ccggagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatct 435
           ||||||||||| || ||||||||||| | |||||||||||| |||||||| ||||| || 
Sbjct: 920 ccggagcccttgtgatgctcctcggcggccatcttctccttggtcatcgtcccgacgtcc 861

                                                                       
Query: 436 gtggcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagaca 495
           ||||||| |||||||||||||  |||||||||||| ||||||||||||| ||||||||||
Sbjct: 860 gtggcggtcttggcgaccttgttgaacgcgctggtgacccatgacgcgccggtgaagaca 801

                                                                       
Query: 496 tacctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagc 555
           |||||||||||||||||||||||||||||  |||||||| |||||||||| ||||| || 
Sbjct: 800 tacctgttcttcatgatggcagacccggcactgctcaccttctgctcggcggcagcgagt 741

                           
Query: 556 gctgacttggtcttgt 571
           || |||||||||||||
Sbjct: 740 gcggacttggtcttgt 725
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>gb|AY111082.1| Zea mays CL35819_1 mRNA sequence
          Length = 588

 Score =  202 bits (102), Expect = 9e-49
 Identities = 168/190 (88%)
 Strand = Plus / Plus

                                                                       
Query: 380 agcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtgg 439
           |||||||||||||||||||||||| |||||||||||| ||||| || ||||| || ||||
Sbjct: 383 agcccttctgctgctcctcggccgccatcttctccttggtcattgtcccgacgtccgtgg 442

                                                                       
Query: 440 cggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatacc 499
           | |||||||||||||||  |||||||| ||| ||||| ||||||| ||||||||| ||||
Sbjct: 443 cagccttggcgaccttgttgaacgcgccggtgacccacgacgcgccggtgaagacgtacc 502

                                                                       
Query: 500 tgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgctg 559
           |||||||||||||||||||||||||  |||||||| |||||||||| || || | |||||
Sbjct: 503 tgttcttcatgatggcagacccggcactgctcaccttctgctcggcagcggcgaacgctg 562

                     
Query: 560 acttggtctt 569
           |||| |||||
Sbjct: 563 actttgtctt 572
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>ref|XM_550488.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1027

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                       
Query: 379 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 864 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 805

                                                                       
Query: 439 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 804 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 745

                                                                       
Query: 499 ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
           || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 744 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 685

                        
Query: 559 gacttggtcttgt 571
           |||||||||||||
Sbjct: 684 gacttggtcttgt 672
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                          
Query: 379    gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
              |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 700886 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 700827

                                                                          
Query: 439    gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
              || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 700826 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 700767

                                                                          
Query: 499    ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
              || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 700766 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 700707

                           
Query: 559    gacttggtcttgt 571
              |||||||||||||
Sbjct: 700706 gacttggtcttgt 700694
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>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                          
Query: 379    gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
              |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 107314 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 107255

                                                                          
Query: 439    gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
              || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 107254 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 107195

                                                                          
Query: 499    ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
              || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 107194 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 107135

                           
Query: 559    gacttggtcttgt 571
              |||||||||||||
Sbjct: 107134 gacttggtcttgt 107122
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>dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A08, full
           insert sequence
          Length = 1143

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                       
Query: 379 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 864 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 805

                                                                       
Query: 439 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 804 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 745

                                                                       
Query: 499 ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
           || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 744 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 685

                        
Query: 559 gacttggtcttgt 571
           |||||||||||||
Sbjct: 684 gacttggtcttgt 672
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>dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H22, full
           insert sequence
          Length = 1193

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                       
Query: 379 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 867 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 808

                                                                       
Query: 439 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 807 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 748

                                                                       
Query: 499 ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
           || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 747 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 688

                        
Query: 559 gacttggtcttgt 571
           |||||||||||||
Sbjct: 687 gacttggtcttgt 675
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>dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C18, full
           insert sequence
          Length = 1026

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                       
Query: 379 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 863 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 804

                                                                       
Query: 439 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 803 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 744

                                                                       
Query: 499 ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
           || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 743 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 684

                        
Query: 559 gacttggtcttgt 571
           |||||||||||||
Sbjct: 683 gacttggtcttgt 671
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>dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H08, full
           insert sequence
          Length = 1147

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 156/193 (80%)
 Strand = Plus / Minus

                                                                       
Query: 379 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 438
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 868 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 809

                                                                       
Query: 439 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 498
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 808 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 749

                                                                       
Query: 499 ctgttcttcatgatggcagacccggcgttgctcaccgtctgctcggccgcagccagcgct 558
           || ||||||||||| ||||| || ||  |||||||| |||| || || ||||| |  || 
Sbjct: 748 ctattcttcatgatagcagatccagcagtgctcaccttctgttcagcagcagcgaatgca 689

                        
Query: 559 gacttggtcttgt 571
           |||||||||||||
Sbjct: 688 gacttggtcttgt 676
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>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 496   tacctgttcttcatgatggcagacccggcgttgctcaccgtctgctc 542
             ||||||||||||||||| || || || ||||||||||||||||||||
Sbjct: 45161 tacctgttcttcatgatagccgagcccgcgttgctcaccgtctgctc 45207
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>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 492   gacatacctgttcttcatgatggcaga 518
             |||||||||||||||||||||||||||
Sbjct: 60392 gacatacctgttcttcatgatggcaga 60418
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
              complete sequence
          Length = 179644

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 492    gacatacctgttcttcatgatggcaga 518
              |||||||||||||||||||||||||||
Sbjct: 157462 gacatacctgttcttcatgatggcaga 157488
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 492      gacatacctgttcttcatgatggcaga 518
                |||||||||||||||||||||||||||
Sbjct: 30020710 gacatacctgttcttcatgatggcaga 30020736
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>dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A03, full
           insert sequence
          Length = 1318

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 492 gacatacctgttcttcatgatggcaga 518
           |||||||||||||||||||||||||||
Sbjct: 714 gacatacctgttcttcatgatggcaga 688
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>gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence
          Length = 1011

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 493 acatacctgttcttcatgatggcagacccggcgttgctcaccgtctgctc 542
           ||||| |||||||||||||||||||| || ||  |||| |||||||||||
Sbjct: 648 acatatctgttcttcatgatggcagatccagcagtgctaaccgtctgctc 599
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>gb|AY105917.1| Zea mays PCO144852 mRNA sequence
          Length = 478

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 493 acatacctgttcttcatgatggcaga 518
           |||||||||||||||||||| |||||
Sbjct: 223 acatacctgttcttcatgatagcaga 198
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 438    ggcggccttggcgaccttgcc 458
              |||||||||||||||||||||
Sbjct: 952416 ggcggccttggcgaccttgcc 952436
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    cttctacaaagagaaacaaaa 217
              |||||||||||||||||||||
Sbjct: 181908 cttctacaaagagaaacaaaa 181888
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 270      atatatctaaagttgttttct 290
                |||||||||||||||||||||
Sbjct: 30304582 atatatctaaagttgttttct 30304562
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>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence
          Length = 120464

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 403   gacatcttctccttcgtcatcgtgc 427
             |||||||||||||||| ||||||||
Sbjct: 50751 gacatcttctccttcggcatcgtgc 50727
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>emb|AL161550.2|ATCHRIV50 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 50
          Length = 199382

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    cttccacaacttaaaaaagta 125
              |||||||||||||||||||||
Sbjct: 179342 cttccacaacttaaaaaagta 179322
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>emb|AL022580.1|ATT5K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T5K18 (ESSA project)
          Length = 90551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   cttccacaacttaaaaaagta 125
             |||||||||||||||||||||
Sbjct: 73291 cttccacaacttaaaaaagta 73271
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>emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in linkage group 1,
             complete sequence
          Length = 148544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   tacaaagagaaacaaaatcct 221
             |||||||||||||||||||||
Sbjct: 75788 tacaaagagaaacaaaatcct 75768
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>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold
          Length = 360990

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    caataaataatacaacatggc 318
              |||||||||||||||||||||
Sbjct: 106868 caataaataatacaacatggc 106848
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
             sequence
          Length = 130359

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   atatatctaaagttgttttct 290
             |||||||||||||||||||||
Sbjct: 96262 atatatctaaagttgttttct 96242
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 270      atatatctaaagttgttttct 290
                |||||||||||||||||||||
Sbjct: 30396004 atatatctaaagttgttttct 30395984
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>gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33 of 107 of the
            complete sequence
          Length = 14876

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 438  ggcggccttggcgaccttgcc 458
            |||||||||||||||||||||
Sbjct: 5349 ggcggccttggcgaccttgcc 5329
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>ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA
          Length = 2796

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 403  gacatcttctccttcgtcatcgtgc 427
            |||||||||||||||| ||||||||
Sbjct: 1649 gacatcttctccttcggcatcgtgc 1673
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 438    ggcggccttggcgaccttgcc 458
              |||||||||||||||||||||
Sbjct: 264777 ggcggccttggcgaccttgcc 264757
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>dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full
            insert sequence
          Length = 2829

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  atatatctaaagttgttttct 290
            |||||||||||||||||||||
Sbjct: 2302 atatatctaaagttgttttct 2322
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 438    ggcggccttggcgaccttgcc 458
              |||||||||||||||||||||
Sbjct: 264846 ggcggccttggcgaccttgcc 264826
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>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12,
             complete sequence
          Length = 106763

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 264   tgttctatatatctaaagttgtttt 288
             |||||||||||||| ||||||||||
Sbjct: 31206 tgttctatatatctgaagttgtttt 31230
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>dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, complete cds
          Length = 2796

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 403  gacatcttctccttcgtcatcgtgc 427
            |||||||||||||||| ||||||||
Sbjct: 1649 gacatcttctccttcggcatcgtgc 1673
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 155   attttgtaataacatgtaaaaccccaag 182
             ||||||| |||||||||||| |||||||
Sbjct: 73913 attttgtgataacatgtaaagccccaag 73940
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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 526    ttgctcaccgtctgctcggc 545
              ||||||||||||||||||||
Sbjct: 151946 ttgctcaccgtctgctcggc 151927
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>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence
          Length = 175566

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 526    ttgctcaccgtctgctcggc 545
              ||||||||||||||||||||
Sbjct: 167820 ttgctcaccgtctgctcggc 167839
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>gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section 89 of 121 of the
            complete plasmid sequence
          Length = 10765

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  tggcgatcagcggatgggcg 361
            ||||||||||||||||||||
Sbjct: 4163 tggcgatcagcggatgggcg 4182
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>ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01867.1)
           partial mRNA
          Length = 1851

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 394 tcctcggccgacatcttctccttc 417
           |||||||||||| |||||||||||
Sbjct: 423 tcctcggccgacttcttctccttc 446
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    ctgctcggccgcagccagcg 556
              ||||||||||||||||||||
Sbjct: 739499 ctgctcggccgcagccagcg 739480
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>ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase (48.t00015)  partial
           mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 accaataaataatacaacat 315
           ||||||||||||||||||||
Sbjct: 255 accaataaataatacaacat 236
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>gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete sequence
          Length = 141672

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   cttccacaacttaaaaaagtaaaa 128
             ||||||||| ||||||||||||||
Sbjct: 61353 cttccacaaattaaaaaagtaaaa 61330
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   ctcggccgcagccagcgctg 559
             ||||||||||||||||||||
Sbjct: 31655 ctcggccgcagccagcgctg 31636
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    tgccgaacgcgctggtcacc 474
              ||||||||||||||||||||
Sbjct: 265269 tgccgaacgcgctggtcacc 265250
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>emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in linkage group 24,
              complete sequence
          Length = 167553

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    ttctacaaagagaaacaaaa 217
              ||||||||||||||||||||
Sbjct: 158163 ttctacaaagagaaacaaaa 158144
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>emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chromosome 4, complete
             sequence
          Length = 152376

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   tccaccaataaataatacaa 312
             ||||||||||||||||||||
Sbjct: 41603 tccaccaataaataatacaa 41584
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>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7,
             complete sequence
          Length = 79440

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   tcggccgcagccagcgctga 560
             ||||||||||||||||||||
Sbjct: 49975 tcggccgcagccagcgctga 49956
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     tggcggccttggcgaccttg 456
               ||||||||||||||||||||
Sbjct: 2824116 tggcggccttggcgaccttg 2824097
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>gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 454 ttgccgaacgcgctggtcacccat 477
           ||||||| ||||||||||||||||
Sbjct: 290 ttgccgagcgcgctggtcacccat 267
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>gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 454 ttgccgaacgcgctggtcacccat 477
           ||||||| ||||||||||||||||
Sbjct: 290 ttgccgagcgcgctggtcacccat 267
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>emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in linkage group 5,
             complete sequence
          Length = 117265

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   tcggccgcagccagcgctga 560
             ||||||||||||||||||||
Sbjct: 52883 tcggccgcagccagcgctga 52902
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>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    tacagcatccttccacaact 115
             ||||||||||||||||||||
Sbjct: 88100 tacagcatccttccacaact 88119
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>gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, complete sequence
          Length = 74925

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tattacagcatccttccaca 112
             ||||||||||||||||||||
Sbjct: 10540 tattacagcatccttccaca 10559
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>gb|AC084193.5| Homo sapiens BAC clone RP11-545M11 from 2, complete sequence
          Length = 185671

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    ccacaacttaaaaaagtaaa 127
              ||||||||||||||||||||
Sbjct: 103589 ccacaacttaaaaaagtaaa 103570
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>gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202028

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ttccacaacttaaaaaagta 125
              ||||||||||||||||||||
Sbjct: 101014 ttccacaacttaaaaaagta 100995
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>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
              complete sequence
          Length = 208279

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    ttctacaaagagaaacaaaa 217
              ||||||||||||||||||||
Sbjct: 169736 ttctacaaagagaaacaaaa 169755
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>emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in linkage group 13,
             complete sequence
          Length = 47008

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   tcggccgcagccagcgctga 560
             ||||||||||||||||||||
Sbjct: 23369 tcggccgcagccagcgctga 23350
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>emb|CR381551.19| Zebrafish DNA sequence from clone DKEY-203A12 in linkage group 14,
             complete sequence
          Length = 156476

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   tcggccgcagccagcgctga 560
             ||||||||||||||||||||
Sbjct: 91258 tcggccgcagccagcgctga 91239
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>emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in linkage group 11,
             complete sequence
          Length = 48855

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tatatatctaaagttgtttt 288
             ||||||||||||||||||||
Sbjct: 39021 tatatatctaaagttgtttt 39002
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>gb|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 map 4q25, complete sequence
          Length = 127098

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   accattttgtaataacatgt 171
             ||||||||||||||||||||
Sbjct: 16849 accattttgtaataacatgt 16830
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>dbj|AP001102.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-680L20, complete
             sequences
          Length = 72000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ttgtgtactagtatgattat 42
             ||||||||||||||||||||
Sbjct: 70941 ttgtgtactagtatgattat 70960
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>dbj|AP000811.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-777F6, complete
            sequences
          Length = 176953

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   ttgtgtactagtatgattat 42
            ||||||||||||||||||||
Sbjct: 1838 ttgtgtactagtatgattat 1857
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>gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome 17, complete sequence
          Length = 234088

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   aaagagaaacaaaatcctgg 223
             ||||||||||||||||||||
Sbjct: 77675 aaagagaaacaaaatcctgg 77656
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>gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome
          Length = 134416

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    gaacaacacaacgctaccaa 89
             ||||||||||||||||||||
Sbjct: 10537 gaacaacacaacgctaccaa 10556
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>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete
              sequence
          Length = 196737

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    agagaaacaaaatcctgggt 225
              ||||||||||||||||||||
Sbjct: 191580 agagaaacaaaatcctgggt 191561
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>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to
             2409180
          Length = 201375

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    gaacaacacaacgctaccaa 89
             ||||||||||||||||||||
Sbjct: 67303 gaacaacacaacgctaccaa 67284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,688,939
Number of Sequences: 3902068
Number of extensions: 5688939
Number of successful extensions: 120481
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120040
Number of HSP's gapped (non-prelim): 441
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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