ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13d02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 246 bits (124), Expect = 6e-62 Identities = 346/420 (82%) Strand = Plus / Plus Query: 118 gtcaccgcaaatgtcgctgtctcgagatctgccttaggcctgcttccaggtcttccaatg 177 ||||| |||| || |||||| | ||||||||| | ||||| ||||||||||||||||||| Sbjct: 9513741 gtcactgcaactgccgctgtttggagatctgcttaaggccagcttccaggtcttccaatg 9513800 Query: 178 tgattgtgatcatggtctcagcgtcattgcaactgaaatcaagacgaagatccaagtttt 237 ||||||||||||| || | || || | ||| ||||||||||||| ||||| | || | Sbjct: 9513801 tgattgtgatcatagtattcgcatcgtcgcagttgaaatcaagacgtagatctagattct 9513860 Query: 238 cacgtgcattgacaagaagtgtgtctaccagacctccgttcatctgtttaagccactcct 297 |||| ||||||| || || |||||||| || || || |||||||||||| ||| || | Sbjct: 9513861 cacgggcattgatgagcagcgtgtctacaaggccaccattcatctgtttacgccgctgtt 9513920 Query: 298 cagtagtttccctggcaatcagctctccaacagcacctctggtgcagctctggtgcagcc 357 |||| || ||||||||||||||||||||||| | | || ||||||| ||| |||| Sbjct: 9513921 cagttgtctccctggcaatcagctctccaacgacctcgatgctgcagcttgggtccagct 9513980 Query: 358 tgaacccgtaaagcaaactagtgtcagtcaggctattcatcttcagaagcaatatctccg 417 ||||||| || |||||||| | ||||| || |||||||||||||| | || ||||| | Sbjct: 9513981 tgaacccatacagcaaactgctctcagttgggttattcatcttcagatgtaagatctctg 9514040 Query: 418 ctaattctgtcgtggtgaaatcatcaaaataaaagaacttcgtgaccctcctacagaaac 477 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 9514041 ctaattctgttgtggtgaaatcgtcaaaataaaagaactttgtgaccctcctacagaagc 9514100 Query: 478 catcgttcgacgcaatgacacgcttcatttgcttgcagtacccagcaaatatgacaacta 537 | ||||| || || ||||| ||||||||| ||| ||||| ||||||||||| ||||||| Sbjct: 9514101 cgtcgttggaggcgatgacgcgcttcattggctcacagtatccagcaaatatcacaacta 9514160
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 246 bits (124), Expect = 6e-62 Identities = 346/420 (82%) Strand = Plus / Plus Query: 118 gtcaccgcaaatgtcgctgtctcgagatctgccttaggcctgcttccaggtcttccaatg 177 ||||| |||| || |||||| | ||||||||| | ||||| ||||||||||||||||||| Sbjct: 127302 gtcactgcaactgccgctgtttggagatctgcttaaggccagcttccaggtcttccaatg 127361 Query: 178 tgattgtgatcatggtctcagcgtcattgcaactgaaatcaagacgaagatccaagtttt 237 ||||||||||||| || | || || | ||| ||||||||||||| ||||| | || | Sbjct: 127362 tgattgtgatcatagtattcgcatcgtcgcagttgaaatcaagacgtagatctagattct 127421 Query: 238 cacgtgcattgacaagaagtgtgtctaccagacctccgttcatctgtttaagccactcct 297 |||| ||||||| || || |||||||| || || || |||||||||||| ||| || | Sbjct: 127422 cacgggcattgatgagcagcgtgtctacaaggccaccattcatctgtttacgccgctgtt 127481 Query: 298 cagtagtttccctggcaatcagctctccaacagcacctctggtgcagctctggtgcagcc 357 |||| || ||||||||||||||||||||||| | | || ||||||| ||| |||| Sbjct: 127482 cagttgtctccctggcaatcagctctccaacgacctcgatgctgcagcttgggtccagct 127541 Query: 358 tgaacccgtaaagcaaactagtgtcagtcaggctattcatcttcagaagcaatatctccg 417 ||||||| || |||||||| | ||||| || |||||||||||||| | || ||||| | Sbjct: 127542 tgaacccatacagcaaactgctctcagttgggttattcatcttcagatgtaagatctctg 127601 Query: 418 ctaattctgtcgtggtgaaatcatcaaaataaaagaacttcgtgaccctcctacagaaac 477 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 127602 ctaattctgttgtggtgaaatcgtcaaaataaaagaactttgtgaccctcctacagaagc 127661 Query: 478 catcgttcgacgcaatgacacgcttcatttgcttgcagtacccagcaaatatgacaacta 537 | ||||| || || ||||| ||||||||| ||| ||||| ||||||||||| ||||||| Sbjct: 127662 cgtcgttggaggcgatgacgcgcttcattggctcacagtatccagcaaatatcacaacta 127721
>dbj|AK104958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F10, full insert sequence Length = 1836 Score = 246 bits (124), Expect = 6e-62 Identities = 346/420 (82%) Strand = Plus / Minus Query: 118 gtcaccgcaaatgtcgctgtctcgagatctgccttaggcctgcttccaggtcttccaatg 177 ||||| |||| || |||||| | ||||||||| | ||||| ||||||||||||||||||| Sbjct: 1557 gtcactgcaactgccgctgtttggagatctgcttaaggccagcttccaggtcttccaatg 1498 Query: 178 tgattgtgatcatggtctcagcgtcattgcaactgaaatcaagacgaagatccaagtttt 237 ||||||||||||| || | || || | ||| ||||||||||||| ||||| | || | Sbjct: 1497 tgattgtgatcatagtattcgcatcgtcgcagttgaaatcaagacgtagatctagattct 1438 Query: 238 cacgtgcattgacaagaagtgtgtctaccagacctccgttcatctgtttaagccactcct 297 |||| ||||||| || || |||||||| || || || |||||||||||| ||| || | Sbjct: 1437 cacgggcattgatgagcagcgtgtctacaaggccaccattcatctgtttacgccgctgtt 1378 Query: 298 cagtagtttccctggcaatcagctctccaacagcacctctggtgcagctctggtgcagcc 357 |||| || ||||||||||||||||||||||| | | || ||||||| ||| |||| Sbjct: 1377 cagttgtctccctggcaatcagctctccaacgacctcgatgctgcagcttgggtccagct 1318 Query: 358 tgaacccgtaaagcaaactagtgtcagtcaggctattcatcttcagaagcaatatctccg 417 ||||||| || |||||||| | ||||| || |||||||||||||| | || ||||| | Sbjct: 1317 tgaacccatacagcaaactgctctcagttgggttattcatcttcagatgtaagatctctg 1258 Query: 418 ctaattctgtcgtggtgaaatcatcaaaataaaagaacttcgtgaccctcctacagaaac 477 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 1257 ctaattctgttgtggtgaaatcgtcaaaataaaagaactttgtgaccctcctacagaagc 1198 Query: 478 catcgttcgacgcaatgacacgcttcatttgcttgcagtacccagcaaatatgacaacta 537 | ||||| || || ||||| ||||||||| ||| ||||| ||||||||||| ||||||| Sbjct: 1197 cgtcgttggaggcgatgacgcgcttcattggctcacagtatccagcaaatatcacaacta 1138
>dbj|AK071896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057J17, full insert sequence Length = 1861 Score = 246 bits (124), Expect = 6e-62 Identities = 346/420 (82%) Strand = Plus / Minus Query: 118 gtcaccgcaaatgtcgctgtctcgagatctgccttaggcctgcttccaggtcttccaatg 177 ||||| |||| || |||||| | ||||||||| | ||||| ||||||||||||||||||| Sbjct: 1579 gtcactgcaactgccgctgtttggagatctgcttaaggccagcttccaggtcttccaatg 1520 Query: 178 tgattgtgatcatggtctcagcgtcattgcaactgaaatcaagacgaagatccaagtttt 237 ||||||||||||| || | || || | ||| ||||||||||||| ||||| | || | Sbjct: 1519 tgattgtgatcatagtattcgcatcgtcgcagttgaaatcaagacgtagatctagattct 1460 Query: 238 cacgtgcattgacaagaagtgtgtctaccagacctccgttcatctgtttaagccactcct 297 |||| ||||||| || || |||||||| || || || |||||||||||| ||| || | Sbjct: 1459 cacgggcattgatgagcagcgtgtctacaaggccaccattcatctgtttacgccgctgtt 1400 Query: 298 cagtagtttccctggcaatcagctctccaacagcacctctggtgcagctctggtgcagcc 357 |||| || ||||||||||||||||||||||| | | || ||||||| ||| |||| Sbjct: 1399 cagttgtctccctggcaatcagctctccaacgacctcgatgctgcagcttgggtccagct 1340 Query: 358 tgaacccgtaaagcaaactagtgtcagtcaggctattcatcttcagaagcaatatctccg 417 ||||||| || |||||||| | ||||| || |||||||||||||| | || ||||| | Sbjct: 1339 tgaacccatacagcaaactgctctcagttgggttattcatcttcagatgtaagatctctg 1280 Query: 418 ctaattctgtcgtggtgaaatcatcaaaataaaagaacttcgtgaccctcctacagaaac 477 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 1279 ctaattctgttgtggtgaaatcgtcaaaataaaagaactttgtgaccctcctacagaagc 1220 Query: 478 catcgttcgacgcaatgacacgcttcatttgcttgcagtacccagcaaatatgacaacta 537 | ||||| || || ||||| ||||||||| ||| ||||| ||||||||||| ||||||| Sbjct: 1219 cgtcgttggaggcgatgacgcgcttcattggctcacagtatccagcaaatatcacaacta 1160
>gb|AY107934.1| Zea mays PCO096568 mRNA sequence Length = 638 Score = 155 bits (78), Expect = 2e-34 Identities = 306/382 (80%) Strand = Plus / Minus Query: 156 cctgcttccaggtcttccaatgtgattgtgatcatggtctcagcgtcattgcaactgaaa 215 ||||| |||||||||||||| ||||| |||||||| || || || || ||||| ||||| Sbjct: 447 cctgcctccaggtcttccaacgtgatcgtgatcatagtatcggcatcgttgcagttgaaa 388 Query: 216 tcaagacgaagatccaagttttcacgtgcattgacaagaagtgtgtctaccagacctccg 275 ||||| || ||||| ||| || || ||||||| || || |||||||| || ||||| Sbjct: 387 tcaagccgcgaatccaggttctcgcgggcattgatgagcagcgtgtctacaaggcctcca 328 Query: 276 ttcatctgtttaagccactcctcagtagtttccctggcaatcagctctccaacagcacct 335 |||||||| || | ||| ||||| |||||||||||||||||||||||| || | Sbjct: 327 ttcatctgcttcctctgctcttcagtgatttccctggcaatcagctctccaatggcttca 268 Query: 336 ctggtgcagctctggtgcagcctgaacccgtaaagcaaactagtgtcagtcaggctattc 395 || ||||||| |||||||| | |||||||||||||| ||| |||| | | || ||| Sbjct: 267 atgctgcagcttgggtgcagcttaaacccgtaaagcaagctacagtcacttggactcttc 208 Query: 396 atcttcagaagcaatatctccgctaattctgtcgtggtgaaatcatcaaaataaaagaac 455 ||||||| | | | ||||| |||| ||||||||| |||||||||| ||||| ||||| Sbjct: 207 atcttcatatgtaggatctctgctagttctgtcgtactgaaatcatcgaaatagaagaat 148 Query: 456 ttcgtgaccctcctacagaaaccatcgttcgacgcaatgacacgcttcatttgcttgcag 515 |||||||||| ||| ||||| ||||| ||||| || ||||| ||||||||| ||| ||| Sbjct: 147 ttcgtgacccgcctgcagaagccatcattcgaggcgatgactcgcttcattggctcacag 88 Query: 516 tacccagcaaatatgacaacta 537 ||||||||||||| |||||||| Sbjct: 87 tacccagcaaatacgacaacta 66
>gb|AC117657.11| Mus musculus chromosome 15, clone RP23-299O23, complete sequence Length = 198005 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 gcctgcttccaggtcttccaat 176 |||||||||||||||||||||| Sbjct: 178486 gcctgcttccaggtcttccaat 178465
>gb|AC084292.23|AC084292 Mus musculus 1 BAC RP23-254E8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 192003 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 437 atcatcaaaataaaagaacttc 458 |||||||||||||||||||||| Sbjct: 86293 atcatcaaaataaaagaacttc 86314
>emb|AL928714.15| Zebrafish DNA sequence from clone CH211-46G6 in linkage group 10, complete sequence Length = 170509 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 tcgtggtgaaatcatcaaaat 447 ||||||||||||||||||||| Sbjct: 59775 tcgtggtgaaatcatcaaaat 59755
>gb|BT013947.1| Lycopersicon esculentum clone 132970F, mRNA sequence Length = 1304 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aatgtgattgtgatcatggt 193 |||||||||||||||||||| Sbjct: 736 aatgtgattgtgatcatggt 717
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 cttccaatgtgattgtgatcatgg 192 |||||||||||||||||| ||||| Sbjct: 345333 cttccaatgtgattgtgaacatgg 345356
>emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in linkage group 5, complete sequence Length = 198695 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 tcatcaaaataaaagaactt 457 |||||||||||||||||||| Sbjct: 133124 tcatcaaaataaaagaactt 133105
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 ctcctacagaaaccatcgtt 484 |||||||||||||||||||| Sbjct: 3274019 ctcctacagaaaccatcgtt 3274038
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atcctcctaggaggggtcac 122 |||||||||||||||||||| Sbjct: 8928314 atcctcctaggaggggtcac 8928333
>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0045M11 Length = 159148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atcctcctaggaggggtcac 122 |||||||||||||||||||| Sbjct: 88621 atcctcctaggaggggtcac 88640
>dbj|AB094487.1| Triticum aestivum TaHd1-1 gene for Hd1-like protein, complete cds Length = 2215 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tgcgtttctttgtattgaaa 83 |||||||||||||||||||| Sbjct: 1504 tgcgtttctttgtattgaaa 1523
>emb|AL833804.16| Mouse DNA sequence from clone RP23-20A6 on chromosome 2, complete sequence Length = 200521 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 gcttcatttgcttgcagtacccag 522 |||||||||||||||||| ||||| Sbjct: 177223 gcttcatttgcttgcagtgcccag 177200
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 ctcctacagaaaccatcgtt 484 |||||||||||||||||||| Sbjct: 1020034 ctcctacagaaaccatcgtt 1020015
>gb|AC125143.4| Mus musculus BAC clone RP24-342H13 from 17, complete sequence Length = 219259 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 agtgtgtctaccagacctcc 274 |||||||||||||||||||| Sbjct: 145287 agtgtgtctaccagacctcc 145268
>emb|CR405701.20| Zebrafish DNA sequence from clone CH211-45M20 in linkage group 5, complete sequence Length = 125284 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tcatcaaaataaaagaactt 457 |||||||||||||||||||| Sbjct: 64327 tcatcaaaataaaagaactt 64346 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tcatcaaaataaaagaactt 457 |||||||||||||||||||| Sbjct: 63961 tcatcaaaataaaagaactt 63980
>gb|AC168090.3| Mus musculus BAC clone RP24-272N5 from chromosome 17, complete sequence Length = 157940 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 agtgtgtctaccagacctcc 274 |||||||||||||||||||| Sbjct: 30250 agtgtgtctaccagacctcc 30231
>emb|AL808117.6| Mouse DNA sequence from clone RP23-240N3 on chromosome 2, complete sequence Length = 245266 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 gtgcattgacaagaagtgtgtcta 264 ||||||| |||||||||||||||| Sbjct: 11400 gtgcattcacaagaagtgtgtcta 11377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,534,616 Number of Sequences: 3902068 Number of extensions: 4534616 Number of successful extensions: 88089 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87944 Number of HSP's gapped (non-prelim): 144 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
