ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock prote... 101 6e-19
2gb|AY118856.1| Drosophila melanogaster GM21245 full insert cDNA 40 1.8
3ref|NM_175980.1| Drosophila melanogaster CG7102-RA (CG7102), mRNA 40 1.8
4gb|AY051920.1| Drosophila melanogaster LD40565 full length cDNA 40 1.8
5gb|AC008329.3|AC008329 Drosophila melanogaster, chromosome 2L, r... 40 1.8
6gb|AE003619.3| Drosophila melanogaster chromosome 2L, section 28... 40 1.8
7gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell... 38 7.2
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
9dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
10gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 ... 38 7.2

>gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock protein (TaHSP70d) mRNA, complete
            cds
          Length = 2311

 Score =  101 bits (51), Expect = 6e-19
 Identities = 105/123 (85%), Gaps = 4/123 (3%)
 Strand = Plus / Minus

                                                                        
Query: 11   actccatccaaccactattactacttcctgctacatgacacgacgacaaacgactgacac 70
            |||||||| ||| |||| |||||||||| |||| ||||||| |||||| |||||||||||
Sbjct: 2212 actccatcgaacgactactactacttccagctagatgacacaacgacagacgactgacac 2153

                                                                        
Query: 71   caccgagcagcatncaaaggac----accgaaacagaacacccatcaagttgcgcgcaga 126
            |||||||| |||| ||||||||    ||||| ||||   ||||||||||| |||||||||
Sbjct: 2152 caccgagcggcatccaaaggacggacaccgagacagcgaacccatcaagtagcgcgcaga 2093

               
Query: 127  ccg 129
            |||
Sbjct: 2092 ccg 2090



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>gb|AY118856.1| Drosophila melanogaster GM21245 full insert cDNA
          Length = 1153

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  ccactattactacttcctgc 41
           ||||||||||||||||||||
Sbjct: 978 ccactattactacttcctgc 959



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>ref|NM_175980.1| Drosophila melanogaster CG7102-RA (CG7102), mRNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   ccactattactacttcctgc 41
            ||||||||||||||||||||
Sbjct: 1894 ccactattactacttcctgc 1875



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>gb|AY051920.1| Drosophila melanogaster LD40565 full length cDNA
          Length = 2089

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   ccactattactacttcctgc 41
            ||||||||||||||||||||
Sbjct: 1894 ccactattactacttcctgc 1875



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>gb|AC008329.3|AC008329 Drosophila melanogaster, chromosome 2L, region 28C-28D, BAC clone
             BACR31D05, complete sequence
          Length = 172633

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ccactattactacttcctgc 41
             ||||||||||||||||||||
Sbjct: 92109 ccactattactacttcctgc 92128



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>gb|AE003619.3| Drosophila melanogaster chromosome 2L, section 28 of 83 of the complete
             sequence
          Length = 289516

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ccactattactacttcctgc 41
             ||||||||||||||||||||
Sbjct: 62499 ccactattactacttcctgc 62518



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>gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 183105

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 43     acatgacacgacgacaaacgact 65
              |||||||| ||||||||||||||
Sbjct: 146525 acatgacaagacgacaaacgact 146547



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 4        caaaacaactccatccaac 22
                |||||||||||||||||||
Sbjct: 15576301 caaaacaactccatccaac 15576319



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>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0644G05
          Length = 143119

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      caaaacaactccatccaac 22
              |||||||||||||||||||
Sbjct: 103861 caaaacaactccatccaac 103879



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>gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 of 74 of the complete
              sequence
          Length = 285949

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 43     acatgacacgacgacaaacgact 65
              |||||||| ||||||||||||||
Sbjct: 145323 acatgacaagacgacaaacgact 145301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 911,637
Number of Sequences: 3902068
Number of extensions: 911637
Number of successful extensions: 65002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64975
Number of HSP's gapped (non-prelim): 27
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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