ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC013410.5| Homo sapiens BAC clone RP11-495I2 from 2, complet... 42 0.39
2emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 1.6
3gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone ... 40 1.6
4gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, com... 40 1.6
5gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 1.6
6emb|AL133231.15| Human DNA sequence from clone RP5-867F11 on chr... 38 6.2
7emb|BX036070.1|CNS08ZZU Single read from an extremity of a full-... 38 6.2
8emb|BX025180.1|CNS08RLC Single read from an extremity of a full-... 38 6.2
9emb|BX019512.1|CNS08N7W Single read from an extremity of a full-... 38 6.2
10emb|BX013422.1|CNS08IIQ Single read from an extremity of a full-... 38 6.2
11emb|BX010150.1|CNS08FZU Single read from an extremity of a full-... 38 6.2
12gb|AC164578.5| Mus musculus BAC RP23-15E20 (Roswell Park Cancer... 38 6.2
13emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 i... 38 6.2
14emb|BX649498.5| Zebrafish DNA sequence from clone DKEY-172F5 in ... 38 6.2
15ref|NM_142847.1| Drosophila melanogaster CG6660-RA (CG6660), mRNA 38 6.2
16gb|BT023370.1| Drosophila melanogaster IP10355 full insert cDNA 38 6.2
17gb|BT023270.1| Drosophila melanogaster IP10055 full insert cDNA 38 6.2
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
19gb|AC008199.4|AC008199 Drosophila melanogaster, chromosome 3R, r... 38 6.2
20dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
21emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 ... 38 6.2
22emb|BX255933.7| Zebrafish DNA sequence from clone DKEY-38L7 in l... 38 6.2
23ref|XM_321707.2| Anopheles gambiae str. PEST ENSANGP00000015783 ... 38 6.2
24gb|AE003741.2| Drosophila melanogaster chromosome 3R, section 79... 38 6.2

>gb|AC013410.5| Homo sapiens BAC clone RP11-495I2 from 2, complete sequence
          Length = 200900

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 92     ggagaatggagcttcacaaagggct 116
              |||||||| ||||||||||||||||
Sbjct: 168218 ggagaatgcagcttcacaaagggct 168194



to top

>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     ataaactaaaccaagcataa 45
              ||||||||||||||||||||
Sbjct: 286089 ataaactaaaccaagcataa 286070



to top

>gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone RP23-75F13, complete
              sequence
          Length = 136268

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tgaactacagacaattaggc 24
              ||||||||||||||||||||
Sbjct: 136006 tgaactacagacaattaggc 135987



to top

>gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, complete sequence
          Length = 196087

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tgaactacagacaattaggc 24
             ||||||||||||||||||||
Sbjct: 34378 tgaactacagacaattaggc 34397



to top

>gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone rp23-71e13, complete
              sequence
          Length = 213482

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tgaactacagacaattaggc 24
              ||||||||||||||||||||
Sbjct: 210525 tgaactacagacaattaggc 210506



to top

>emb|AL133231.15| Human DNA sequence from clone RP5-867F11 on chromosome 20 Contains the
             TCF15 gene for transcription factor 15 (basic
             helix-loop-helix) and a CpG island, complete sequence
          Length = 50488

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    gcataacaaaacaccctaa 58
             |||||||||||||||||||
Sbjct: 50166 gcataacaaaacaccctaa 50148



to top

>emb|BX036070.1|CNS08ZZU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA7CH10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1024

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  aagtgctgcgcaagaagaa 75
           |||||||||||||||||||
Sbjct: 293 aagtgctgcgcaagaagaa 311



to top

>emb|BX025180.1|CNS08RLC Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA38CD11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 976

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  aagtgctgcgcaagaagaa 75
           |||||||||||||||||||
Sbjct: 489 aagtgctgcgcaagaagaa 507



to top

>emb|BX019512.1|CNS08N7W Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA29DB08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 897

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  aagtgctgcgcaagaagaa 75
           |||||||||||||||||||
Sbjct: 277 aagtgctgcgcaagaagaa 295



to top

>emb|BX013422.1|CNS08IIQ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA20AG12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 817

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  aagtgctgcgcaagaagaa 75
           |||||||||||||||||||
Sbjct: 269 aagtgctgcgcaagaagaa 287



to top

>emb|BX010150.1|CNS08FZU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA16BD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 926

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  aagtgctgcgcaagaagaa 75
           |||||||||||||||||||
Sbjct: 267 aagtgctgcgcaagaagaa 285



to top

>gb|AC164578.5| Mus musculus  BAC RP23-15E20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 225564

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 85     gcattggggagaatggagc 103
              |||||||||||||||||||
Sbjct: 170482 gcattggggagaatggagc 170500



to top

>emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 in linkage group 12,
              complete sequence
          Length = 136645

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     tataaactaaaccaagcat 43
              |||||||||||||||||||
Sbjct: 106337 tataaactaaaccaagcat 106319



to top

>emb|BX649498.5| Zebrafish DNA sequence from clone DKEY-172F5 in linkage group 6,
             complete sequence
          Length = 91141

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     actacagacaattaggcta 26
             |||||||||||||||||||
Sbjct: 30084 actacagacaattaggcta 30102



to top

>ref|NM_142847.1| Drosophila melanogaster CG6660-RA (CG6660), mRNA
          Length = 819

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 58  agtgctgcgcaagaagaac 76
           |||||||||||||||||||
Sbjct: 396 agtgctgcgcaagaagaac 414



to top

>gb|BT023370.1| Drosophila melanogaster IP10355 full insert cDNA
          Length = 1207

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 58  agtgctgcgcaagaagaac 76
           |||||||||||||||||||
Sbjct: 595 agtgctgcgcaagaagaac 613



to top

>gb|BT023270.1| Drosophila melanogaster IP10055 full insert cDNA
          Length = 1311

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 58  agtgctgcgcaagaagaac 76
           |||||||||||||||||||
Sbjct: 692 agtgctgcgcaagaagaac 710



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 17       aattaggctataaactaaaccaa 39
                ||||||||||||||| |||||||
Sbjct: 23461346 aattaggctataaaccaaaccaa 23461324



to top

>gb|AC008199.4|AC008199 Drosophila melanogaster, chromosome 3R, region 94D-94D, BAC clone
             BACR01K08, complete sequence
          Length = 177127

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 58    agtgctgcgcaagaagaac 76
             |||||||||||||||||||
Sbjct: 15848 agtgctgcgcaagaagaac 15866



to top

>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025A05
          Length = 154298

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 17    aattaggctataaactaaaccaa 39
             ||||||||||||||| |||||||
Sbjct: 24651 aattaggctataaaccaaaccaa 24629



to top

>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12,
             complete sequence
          Length = 203958

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tataaactaaaccaagcat 43
             |||||||||||||||||||
Sbjct: 99012 tataaactaaaccaagcat 99030



to top

>emb|BX255933.7| Zebrafish DNA sequence from clone DKEY-38L7 in linkage group 6,
             complete sequence
          Length = 231623

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     actacagacaattaggcta 26
             |||||||||||||||||||
Sbjct: 75123 actacagacaattaggcta 75141



to top

>ref|XM_321707.2| Anopheles gambiae str. PEST ENSANGP00000015783 (ENSANGG00000013294),
            partial mRNA
          Length = 1770

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtgctgcgcaagaagaa 75
            |||||||||||||||||||
Sbjct: 1046 aagtgctgcgcaagaagaa 1064



to top

>gb|AE003741.2| Drosophila melanogaster chromosome 3R, section 79 of 118 of the
             complete sequence
          Length = 233356

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 58    agtgctgcgcaagaagaac 76
             |||||||||||||||||||
Sbjct: 43746 agtgctgcgcaagaagaac 43764


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 961,918
Number of Sequences: 3902068
Number of extensions: 961918
Number of successful extensions: 78124
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78065
Number of HSP's gapped (non-prelim): 59
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top