>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
 Frame = -3

Query: 619 PRMRDVPKLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARPQHSENSQRPNSSE 440
           PR+ +VP L PLV  ++  + L+ L F  + I+T C+EGLI  WARP  +   +    +E
Sbjct: 561 PRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDE---ETE 617

Query: 439 LAAGNAISKDKMITSPNKA---GASSSSFKQPSSVI 341
             AG A        SP+K+   G SS     PS  +
Sbjct: 618 AQAGQA----SWPRSPSKSVVEGISSQPGSSPSGTV 649

>WDR20_MOUSE (Q9D5R2) WD-repeat protein 20|
          Length = 567

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = -3

Query: 619 PRMRDVPKLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARP 479
           PRM DVP L PL+  ++  + L+ L F  + IVT C+EG I  WARP
Sbjct: 513 PRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARP 559

>WDR20_HUMAN (Q8TBZ3) WD-repeat protein 20 (DMR protein)|
          Length = 569

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = -3

Query: 619 PRMRDVPKLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARP 479
           PRM DVP L PL+  ++  + L+ L F  + IVT C+EG I  W RP
Sbjct: 515 PRMEDVPLLEPLICKKIAHERLTVLIFLEDCIVTACQEGFICTWGRP 561

>DMWD_HUMAN (Q09019) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein) (Protein 59) (Fragment)
          Length = 553

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 28/93 (30%), Positives = 42/93 (45%)
 Frame = -3

Query: 619 PRMRDVPKLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARPQHSENSQRPNSSE 440
           PR+ +VP L PLV  ++  + L+ L F  + I+T C+EGLI  W RP  +   +   +  
Sbjct: 464 PRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWPRPGKAFTDEETEAQT 523

Query: 439 LAAGNAISKDKMITSPNKAGASSSSFKQPSSVI 341
                  S  K +      G SS     PS  +
Sbjct: 524 GEGSWPRSPSKSVVE----GISSQPGNSPSGTV 552

>CREC_EMENI (Q9P4R5) Catabolite repression protein creC|
          Length = 630

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 595 LSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARPQH--SENSQRPNSSE 440
           L P+++  V  DP+  L F  ++I+T   EG I+ W RP+   S+N     SSE
Sbjct: 559 LPPIMSKAVGEDPICWLGFQEDTIMTSSLEGHIRTWDRPRENISDNYGDQKSSE 612

>YDE3_SCHPO (Q10437) Hypothetical WD-repeat protein C12B10.03 in chromosome I|
          Length = 543

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 604 VPKLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARP 479
           +P +SP+  + V   PLS + F  + ++T    G I+ W RP
Sbjct: 502 IPVISPITIYDVDDSPLSSVFFDPDCMITCATNGRIRTWQRP 543

>PSD_DICD3 (Q9EV04) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 304

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 607 DVPKLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARPQHSENS 461
           D P   P+V   V A  +  +E     +VT  REG+IK WA P   E +
Sbjct: 190 DTP-FGPMVQILVGATIVGSIETVWAGVVTPPREGIIKRWAYPMEGEGA 237

>ASB10_HUMAN (Q8WXI3) Ankyrin repeat and SOCS box protein 10 (ASB-10)|
          Length = 429

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 498 LKSGPGHNTVKTASGQILLSWQLVM 424
           LKSGPG    +TASG  L  WQ V+
Sbjct: 39  LKSGPGPIVTRTASGPALAFWQAVL 63

>YTM1_SCHPO (Q9URY0) Microtubule-associated protein ytm1|
          Length = 440

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 568 HADPLSGLEFTSESIVTICREGLIKIW 488
           H D +SG++ TS++I+T   +G+ ++W
Sbjct: 103 HDDWISGIQLTSDTILTSSYDGIARVW 129

>PSD_ERWCT (Q6D035) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 341

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -3

Query: 598 KLSPLVAHRVHADPLSGLEFTSESIVTICREGLIKIWARPQHSENSQRPNSSELAAGNAI 419
           +  PL    V A  +  +E     +VT  REG+IK W  PQ  E      +  LA G  +
Sbjct: 192 EFGPLAQILVGATIVGSIETVWAGVVTPPREGIIKRWTYPQAGEE----GAVVLAKGEEM 247

Query: 418 SKDKM 404
            + K+
Sbjct: 248 GRFKL 252

>COQ9_BOVIN (Q2NL34) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 319

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 317 LHFYHACSAMATHILSLTWRLVTQGFAGKSASDR 216
           LHF   C+A  TH+L    +LV  G A K  +D+
Sbjct: 148 LHFVTQCNARLTHVLEEEQKLVQLGQAEKKKTDK 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,886,415
Number of Sequences: 219361
Number of extensions: 1955544
Number of successful extensions: 5056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5054
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)