ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111782.1| Zea mays CL38420_1 mRNA sequence 72 2e-09
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
3dbj|AK101515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 64 6e-07
5emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041... 64 6e-07
6emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119... 64 6e-07
7gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.14
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
9dbj|AK105568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.14
11gb|AC165304.8| Mus musculus chromosome 1, clone RP23-138D5, comp... 42 2.2
12gb|AC004499.1| Homo sapiens chromosome 20, BAC clone 104 (LBNL H... 42 2.2
13gb|AC113277.8| Mus musculus chromosome 3, clone RP23-386C15, com... 42 2.2
14gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence 42 2.2
15emb|AL391097.13| Human DNA sequence from clone RP11-15M15 on chr... 42 2.2
16gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold 42 2.2
17gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, co... 42 2.2
18gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 42 2.2
19emb|BX890558.11| Zebrafish DNA sequence from clone CH211-66I8 in... 40 8.6
20gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosom... 40 8.6
21ref|XM_948247.1| Theileria annulata strain Ankara hypothetical p... 40 8.6
22gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 40 8.6
23emb|Z84479.1|HS398G5 Human DNA sequence from clone LA16c-398G5 o... 40 8.6
24emb|AL356608.23| Human DNA sequence from clone RP11-724N1 on chr... 40 8.6
25emb|AL158048.35| Human DNA sequence from clone RP5-963K15 on chr... 40 8.6
26emb|AL137803.15| Human DNA sequence from clone RP5-819F18 on chr... 40 8.6
27emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.6
28gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8 40 8.6
29gb|AC087516.12| Homo sapiens chromosome 15, clone RP11-475A13, c... 40 8.6
30dbj|AK128777.1| Homo sapiens cDNA FLJ45421 fis, clone BRHIP3036371 40 8.6
31gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, co... 40 8.6
32gb|AC023162.41| Homo sapiens 3 BAC RP11-263I1 (Roswell Park Canc... 40 8.6
33gb|AC013722.8| Homo sapiens BAC clone RP11-299H21 from 2, comple... 40 8.6
34gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, compl... 40 8.6
35emb|CR925763.5| Zebrafish DNA sequence from clone CH211-267K22 i... 40 8.6
36gb|AC102506.9| Mus musculus chromosome 1, clone RP24-139E15, com... 40 8.6
37gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, comp... 40 8.6
38gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 8.6
39emb|AL449213.4|HS344J2 Homo sapiens chromosome 3 sequence from B... 40 8.6
40emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on ch... 40 8.6 
>gb|AY111782.1| Zea mays CL38420_1 mRNA sequence
          Length = 620

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 332 tcatgagaaaataacagatgatggttgcttgaagctagagctggatgcgcctgctttgtt 391
           ||||| ||||| ||||||||  |||||||||||||| |||||| | || |||||||| ||
Sbjct: 436 tcatgtgaaaagaacagatggcggttgcttgaagctggagctgaaagcacctgctttatt 495

                                   
Query: 392 tggtgatgttatcatcttatcctt 415
           ||  ||||||| ||||||||||||
Sbjct: 496 tgacgatgttaacatcttatcctt 519



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                       
Query: 441 tcagaagaatttggccgctggctgttttcactgtgttgtggcctggcccagattttaatt 500
           |||||||||| |||| ||||| |||||||||| ||    || | |||||| ||||| |||
Sbjct: 545 tcagaagaatctggctgctggttgttttcactatggatgggtcgggcccaaattttgatt 604

                           
Query: 501 agcccctcacggcata 516
           ||||||||||||||||
Sbjct: 605 agcccctcacggcata 620



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 159 tgtacaggagcaagttccgttatt 182
           ||||||||||||||||| ||||||
Sbjct: 185 tgtacaggagcaagttctgttatt 208
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                       
Query: 567     tgtactctgtgtgcaacaaggggtgagagctttggtacgtctcgcatccgtggaga 622
               ||||||| ||| ||||||||||||||||||||||| || |||||||| | ||||||
Sbjct: 3672538 tgtactcggtgggcaacaaggggtgagagctttggcacatctcgcattcttggaga 3672593
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>dbj|AK101515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F12, full
            insert sequence
          Length = 2211

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 567  tgtactctgtgtgcaacaaggggtgagagctttggtacgtctcgcatccgtggaga 622
            ||||||| ||| ||||||||||||||||||||||| || |||||||| | ||||||
Sbjct: 1742 tgtactcggtgggcaacaaggggtgagagctttggcacatctcgcattcttggaga 1687
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                       
Query: 567     tgtactctgtgtgcaacaaggggtgagagctttggtacgtctcgcatccgtggaga 622
               ||||||| ||| ||||||||||||||||||||||| || |||||||| | ||||||
Sbjct: 3672512 tgtactcggtgggcaacaaggggtgagagctttggcacatctcgcattcttggaga 3672567
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>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104421

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 567   tgtactctgtgtgcaacaaggggtgagagctttggtacgtctcgcatccgtggaga 622
             ||||||| ||| ||||||||||||||||||||||| || |||||||| | ||||||
Sbjct: 77135 tgtactcggtgggcaacaaggggtgagagctttggcacatctcgcattcttggaga 77080
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>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122128

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 567   tgtactctgtgtgcaacaaggggtgagagctttggtacgtctcgcatccgtggaga 622
             ||||||| ||| ||||||||||||||||||||||| || |||||||| | ||||||
Sbjct: 16861 tgtactcggtgggcaacaaggggtgagagctttggcacatctcgcattcttggaga 16806
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09
              map S1559, complete sequence
          Length = 190721

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 588    ggtgagagctttggtacgtctcgcatccgtggaga 622
              ||||||||||||||||| ||| ||| |||||||||
Sbjct: 141593 ggtgagagctttggtacttcttgcagccgtggaga 141559
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 588     ggtgagagctttggtacgtctcgcatccgtggaga 622
               ||||||||||||||||| ||| ||| |||||||||
Sbjct: 3773921 ggtgagagctttggtacttcttgcagccgtggaga 3773887
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>dbj|AK105568.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C10, full
            insert sequence
          Length = 1721

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 588  ggtgagagctttggtacgtctcgcatccgtggaga 622
            ||||||||||||||||| ||| ||| |||||||||
Sbjct: 1431 ggtgagagctttggtacttcttgcagccgtggaga 1397
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 588     ggtgagagctttggtacgtctcgcatccgtggaga 622
               ||||||||||||||||| ||| ||| |||||||||
Sbjct: 3782615 ggtgagagctttggtacttcttgcagccgtggaga 3782581
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>gb|AC165304.8| Mus musculus chromosome 1, clone RP23-138D5, complete sequence
          Length = 204924

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 477    tgtggcctggcccagatttta 497
              |||||||||||||||||||||
Sbjct: 142379 tgtggcctggcccagatttta 142399
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>gb|AC004499.1| Homo sapiens chromosome 20, BAC clone 104 (LBNL H109), complete
             sequence
          Length = 100452

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 436   ccagctcagaagaatttggcc 456
             |||||||||||||||||||||
Sbjct: 47925 ccagctcagaagaatttggcc 47905
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>gb|AC113277.8| Mus musculus chromosome 3, clone RP23-386C15, complete sequence
          Length = 210390

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 458    ctggctgttttcactgtgttg 478
              |||||||||||||||||||||
Sbjct: 164715 ctggctgttttcactgtgttg 164695
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>gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence
          Length = 114691

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 406   tcttatcctttgagatggcat 426
             |||||||||||||||||||||
Sbjct: 23657 tcttatcctttgagatggcat 23677
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>emb|AL391097.13| Human DNA sequence from clone RP11-15M15 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 125201

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 436   ccagctcagaagaatttggcc 456
             |||||||||||||||||||||
Sbjct: 70544 ccagctcagaagaatttggcc 70564
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>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold
          Length = 584809

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 406    tcttatcctttgagatggcat 426
              |||||||||||||||||||||
Sbjct: 348216 tcttatcctttgagatggcat 348236
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>gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, complete sequence
          Length = 197109

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 477  tgtggcctggcccagatttta 497
            |||||||||||||||||||||
Sbjct: 3621 tgtggcctggcccagatttta 3641
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 377     tgcgcctgctttgtttggtga 397
               |||||||||||||||||||||
Sbjct: 1970623 tgcgcctgctttgtttggtga 1970603
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>emb|BX890558.11| Zebrafish DNA sequence from clone CH211-66I8 in linkage group 6,
             complete sequence
          Length = 132028

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   catgagaaaataacagatga 352
             ||||||||||||||||||||
Sbjct: 59394 catgagaaaataacagatga 59375
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>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete
             sequence
          Length = 184128

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   tcatcttatcctttgagatg 422
             ||||||||||||||||||||
Sbjct: 41747 tcatcttatcctttgagatg 41766
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>ref|XM_948247.1| Theileria annulata strain Ankara hypothetical protein (TA10430)
           partial mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 81  gttatggaagaccagccaaatgat 104
           ||||||| ||||||||||||||||
Sbjct: 346 gttatgggagaccagccaaatgat 369
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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    tcatcttatcctttgagatg 422
              ||||||||||||||||||||
Sbjct: 140954 tcatcttatcctttgagatg 140973
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>emb|Z84479.1|HS398G5 Human DNA sequence from clone LA16c-398G5 on chromosome 16, complete
             sequence
          Length = 31697

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   agcaagttccgttattcttt 186
             ||||||||||||||||||||
Sbjct: 27708 agcaagttccgttattcttt 27689
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>emb|AL356608.23| Human DNA sequence from clone RP11-724N1 on chromosome 10 Contains the 5'
              end of the CNNM2 gene for cyclin M2 and a CpG island,
              complete sequence
          Length = 161053

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    tggctgttttcactgtgttg 478
              ||||||||||||||||||||
Sbjct: 146599 tggctgttttcactgtgttg 146580
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>emb|AL158048.35| Human DNA sequence from clone RP5-963K15 on chromosome 1p36.21-36.33
            Contains the SLC2A5 gene for solute carrier family 2
            (facilitated glucose/fructose transporter) member 5, two
            novel genes and two CpG islands, complete sequence
          Length = 139111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 32   ataccattaatatgcaaagnaat 54
            ||||||||||||||||||| |||
Sbjct: 6777 ataccattaatatgcaaagcaat 6799
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>emb|AL137803.15| Human DNA sequence from clone RP5-819F18 on chromosome 1, complete
            sequence
          Length = 59723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  agaaaataacagatgatggt 356
            ||||||||||||||||||||
Sbjct: 6645 agaaaataacagatgatggt 6664
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>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6
          Length = 93443

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   ttctttttggcacatagaca 200
             ||||||||||||||||||||
Sbjct: 27539 ttctttttggcacatagaca 27520
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>gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8
          Length = 256073

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    agcaagttccgttattcttt 186
              ||||||||||||||||||||
Sbjct: 104605 agcaagttccgttattcttt 104586
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>gb|AC087516.12| Homo sapiens chromosome 15, clone RP11-475A13, complete sequence
          Length = 187299

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   cctgctttgtttggtgatgt 400
             ||||||||||||||||||||
Sbjct: 28969 cctgctttgtttggtgatgt 28988
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>dbj|AK128777.1| Homo sapiens cDNA FLJ45421 fis, clone BRHIP3036371
          Length = 4876

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  agcaagttccgttattcttt 186
            ||||||||||||||||||||
Sbjct: 3129 agcaagttccgttattcttt 3110
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>gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, complete sequence
          Length = 192400

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   cctgctttgtttggtgatgt 400
             ||||||||||||||||||||
Sbjct: 27738 cctgctttgtttggtgatgt 27719
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>gb|AC023162.41| Homo sapiens 3 BAC RP11-263I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95579

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   taggccagaaaggggatcag 564
             ||||||||||||||||||||
Sbjct: 26569 taggccagaaaggggatcag 26550
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>gb|AC013722.8| Homo sapiens BAC clone RP11-299H21 from 2, complete sequence
          Length = 207576

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   catggtaaaaatgcaagcaa 321
             ||||||||||||||||||||
Sbjct: 90892 catggtaaaaatgcaagcaa 90911
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>gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, complete sequence
          Length = 210315

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 307   taaaaatgcaagcaaaagcctttg 330
             ||||||||||||||| ||||||||
Sbjct: 79325 taaaaatgcaagcaagagcctttg 79302
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>emb|CR925763.5| Zebrafish DNA sequence from clone CH211-267K22 in linkage group 19,
             complete sequence
          Length = 109265

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   tgttttcactgtgttgtggc 482
             ||||||||||||||||||||
Sbjct: 66220 tgttttcactgtgttgtggc 66239



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   tgttttcactgtgttgtggc 482
             ||||||||||||||||||||
Sbjct: 65670 tgttttcactgtgttgtggc 65689
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>gb|AC102506.9| Mus musculus chromosome 1, clone RP24-139E15, complete sequence
          Length = 151816

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    gtgaattctaggccagaaag 556
              ||||||||||||||||||||
Sbjct: 136545 gtgaattctaggccagaaag 136526
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>gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, complete sequence
          Length = 202770

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 537  gtgaattctaggccagaaag 556
            ||||||||||||||||||||
Sbjct: 4463 gtgaattctaggccagaaag 4444
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     cagctcagaagaatttggcc 456
               ||||||||||||||||||||
Sbjct: 2636106 cagctcagaagaatttggcc 2636087
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>emb|AL449213.4|HS344J2 Homo sapiens chromosome 3 sequence from BAC 344J2 map 3q21 region
             D3S3607-D3S1587, complete sequence
          Length = 98356

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   taggccagaaaggggatcag 564
             ||||||||||||||||||||
Sbjct: 78279 taggccagaaaggggatcag 78298
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>emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on chromosome 4, complete
              sequence
          Length = 174305

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    tttttggcacatagacatct 203
              ||||||||||||||||||||
Sbjct: 156926 tttttggcacatagacatct 156907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,271,870
Number of Sequences: 3902068
Number of extensions: 5271870
Number of successful extensions: 96006
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95784
Number of HSP's gapped (non-prelim): 222
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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