Clone Information

BLAST Search Result

Clone Name	rbags12n17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470426.1\| Oryza sativa (japonica cultivar-group), mRNA	410	e-111
2	dbj\|AK102145.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	410	e-111
3	dbj\|AK059105.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	410	e-111
4	gb\|AY107030.1\| Zea mays PCO111338 mRNA sequence	214	3e-52
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	139	1e-29
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
7	gb\|AC096688.4\| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom...	139	1e-29
8	ref\|NM_128110.2\| Arabidopsis thaliana ATPase AT2G25530 mRNA, com...	56	2e-04
9	gb\|AC130714.3\| Mus musculus BAC clone RP23-367L18 from chromosom...	50	0.009
10	gb\|AC006300.4\| Arabidopsis thaliana chromosome 2 clone F13B15 ma...	50	0.009
11	gb\|AC147220.3\| Mus musculus BAC clone RP23-51A20 from chromosome...	50	0.009
12	ref\|NM_146982.1\| Mus musculus olfactory receptor 1257 (Olfr1257)...	44	0.58
13	gb\|AY318459.1\| Mus musculus olfactory receptor Olfr1257 (Olfr125...	44	0.58
14	gb\|AC125146.3\| Mus musculus BAC clone RP24-348B1 from chromosome...	44	0.58
15	gb\|AC112257.5\| Mus musculus BAC clone RP23-43A18 from 16, comple...	44	0.58
16	ref\|NM_001000572.1\| Rattus norvegicus olfactory receptor 722 (pr...	44	0.58
17	gb\|AY073106.1\| Mus musculus olfactory receptor MOR232-1 gene, co...	44	0.58
18	gb\|AC156038.2\| Mus musculus BAC clone RP23-250I2 from 16, comple...	44	0.58
19	emb\|AL953900.7\| Mouse DNA sequence from clone RP24-166A20 on chr...	44	0.58
20	gb\|CP000114.1\| Streptococcus agalactiae A909, complete genome	42	2.3
21	gb\|AY256959.1\| Streptococcus agalactiae 1,6-alpha-glucosidase (d...	42	2.3
22	gb\|AE014278.1\| Streptococcus agalactiae 2603V/R section 88 of 10...	42	2.3
23	emb\|AL766854.1\|SAG766854 Streptococcus agalactiae NEM316 complet...	42	2.3
24	gb\|AC154830.2\| Mus musculus BAC clone RP24-553I3 from chromosome...	42	2.3
25	gb\|AC154869.3\| Monodelphis domestica, clone XX-216E9, complete s...	42	2.3
26	gb\|AC151843.3\| Mus musculus BAC clone RP23-88K14 from chromosome...	40	9.0
27	gb\|AC124573.4\| Mus musculus BAC clone RP23-159F13 from 10, compl...	40	9.0
28	ref\|XM_724243.1\| Plasmodium yoelii yoelii str. 17XNL m1-family a...	40	9.0
29	gb\|AC073095.4\| Homo sapiens BAC clone RP11-384A20 from 7, comple...	40	9.0
30	ref\|XM_739947.1\| Plasmodium chabaudi chabaudi m1-family aminopep...	40	9.0
31	emb\|AL445650.9\| Human DNA sequence from clone RP11-152K20 on chr...	40	9.0
32	gb\|AC158585.3\| Mus musculus chromosome 5, clone RP24-250F5, comp...	40	9.0
33	emb\|BX908798.1\| Parachlamydia-related symbiont UWE25, complete g...	40	9.0
34	emb\|CR450778.7\| Zebrafish DNA sequence from clone DKEY-14I6 in l...	40	9.0
35	gb\|AC120128.17\| Mus musculus chromosome 5, clone RP23-181F22, co...	40	9.0
36	dbj\|AK125720.1\| Homo sapiens cDNA FLJ43732 fis, clone TESTI1000491	40	9.0
37	gb\|AC073370.7\| Homo sapiens chromosome 10 clone RP11-472G21, com...	40	9.0
38	gb\|AC137894.5\| Homo sapiens chromosome 11, clone RP13-46H24, com...	40	9.0
39	gb\|AC009299.5\| Homo sapiens BAC clone RP11-26B22 from 2, complet...	40	9.0
40	gb\|AC119998.13\| Mus musculus chromosome 17, clone RP24-128A6, co...	40	9.0
41	emb\|BX004774.4\| Zebrafish DNA sequence from clone CH211-133L5, c...	40	9.0
42	gb\|AC127581.4\| Mus musculus BAC clone RP24-88B13 from 9, complet...	40	9.0
43	gb\|AC139108.3\| Mus musculus BAC clone RP23-93M1 from 9, complete...	40	9.0
44	emb\|AL844225.9\| Mouse DNA sequence from clone RP23-119M24 on chr...	40	9.0
45	gb\|U73630.1\|U73630 Human Chromosome 11 Overlapping Cosmids cSRL1...	40	9.0

>ref|XM_470426.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2223

 Score =  410 bits (207), Expect = e-111
 Identities = 366/419 (87%)
 Strand = Plus / Minus

                                                                        
Query: 242  cgctcgagatacaacggggtctgcatttctatgagccgagatatcgcccttcggaacgca 301
            ||||| |||||||  | |||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 2135 cgctccagatacagtgaggtctgcatttctatgagacgggatatcgccctacggaatgca 2076

                                                                        
Query: 302  aacatctcttcttgaccagacagcattgacactagacctttagtagagggtcctacacca 361
            |||||||||||||| |||||||  |||| |||||| ||| ||| ||| ||  || |||||
Sbjct: 2075 aacatctcttcttggccagacaaaattgccactaggcctgtaggagaaggcgctgcacca 2016

                                                                        
Query: 362  acattgccttctgcggaaacatccctccttaactttgacccttccgcttcagtttcaaac 421
            ||||| ||||||||  ||||||||||||| | ||||| |||||| ||||||  ||| |||
Sbjct: 2015 acattaccttctgctaaaacatccctcctaagctttgccccttcagcttcaccttcgaac 1956

                                                                        
Query: 422  tggaaactctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatcaatg 481
            || |||||||| || ||||||||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 1955 tgaaaactctccaagtcaaaaagaggtccttcatcagttccttgaaaaagatcatcaatg 1896

                                                                        
Query: 482  ggtaaggtagctaaacatataaggcggcagtgatgattgtacatctcatcaataagggtg 541
            | | ||| ||||| ||||| ||| ||||||||||||||||| | ||||||||||||||||
Sbjct: 1895 gatgaggcagctagacatacaagacggcagtgatgattgtagagctcatcaataagggtg 1836

                                                                        
Query: 542  atgaatcttcttgccttgtcacggatcttcatactcatagctggaaggtctgatatgaaa 601
            || ||||||||||| |||||||| ||||||||||||||||||||||  || |||||||||
Sbjct: 1835 ataaatcttcttgctttgtcacgaatcttcatactcatagctggaatatccgatatgaaa 1776

                                                                       
Query: 602  attgtatggtagttcctggctattgctatataatctgcagctccgactgggcgtccaca 660
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1775 attgtatggtagttcctggctattgctatatagtctgcagctccaactgggcggccaca 1717

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>dbj|AK102145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086B08, full
            insert sequence
          Length = 2103

 Score =  410 bits (207), Expect = e-111
 Identities = 366/419 (87%)
 Strand = Plus / Minus

                                                                        
Query: 242  cgctcgagatacaacggggtctgcatttctatgagccgagatatcgcccttcggaacgca 301
            ||||| |||||||  | |||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 1850 cgctccagatacagtgaggtctgcatttctatgagacgggatatcgccctacggaatgca 1791

                                                                        
Query: 302  aacatctcttcttgaccagacagcattgacactagacctttagtagagggtcctacacca 361
            |||||||||||||| |||||||  |||| |||||| ||| ||| ||| ||  || |||||
Sbjct: 1790 aacatctcttcttggccagacaaaattgccactaggcctgtaggagaaggcgctgcacca 1731

                                                                        
Query: 362  acattgccttctgcggaaacatccctccttaactttgacccttccgcttcagtttcaaac 421
            ||||| ||||||||  ||||||||||||| | ||||| |||||| ||||||  ||| |||
Sbjct: 1730 acattaccttctgctaaaacatccctcctaagctttgccccttcagcttcaccttcgaac 1671

                                                                        
Query: 422  tggaaactctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatcaatg 481
            || |||||||| || ||||||||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 1670 tgaaaactctccaagtcaaaaagaggtccttcatcagttccttgaaaaagatcatcaatg 1611

                                                                        
Query: 482  ggtaaggtagctaaacatataaggcggcagtgatgattgtacatctcatcaataagggtg 541
            | | ||| ||||| ||||| ||| ||||||||||||||||| | ||||||||||||||||
Sbjct: 1610 gatgaggcagctagacatacaagacggcagtgatgattgtagagctcatcaataagggtg 1551

                                                                        
Query: 542  atgaatcttcttgccttgtcacggatcttcatactcatagctggaaggtctgatatgaaa 601
            || ||||||||||| |||||||| ||||||||||||||||||||||  || |||||||||
Sbjct: 1550 ataaatcttcttgctttgtcacgaatcttcatactcatagctggaatatccgatatgaaa 1491

                                                                       
Query: 602  attgtatggtagttcctggctattgctatataatctgcagctccgactgggcgtccaca 660
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1490 attgtatggtagttcctggctattgctatatagtctgcagctccaactgggcggccaca 1432

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>dbj|AK059105.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D06, full
            insert sequence
          Length = 1485

 Score =  410 bits (207), Expect = e-111
 Identities = 366/419 (87%)
 Strand = Plus / Minus

                                                                        
Query: 242  cgctcgagatacaacggggtctgcatttctatgagccgagatatcgcccttcggaacgca 301
            ||||| |||||||  | |||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 1196 cgctccagatacagtgaggtctgcatttctatgagacgggatatcgccctacggaatgca 1137

                                                                        
Query: 302  aacatctcttcttgaccagacagcattgacactagacctttagtagagggtcctacacca 361
            |||||||||||||| |||||||  |||| |||||| ||| ||| ||| ||  || |||||
Sbjct: 1136 aacatctcttcttggccagacaaaattgccactaggcctgtaggagaaggcgctgcacca 1077

                                                                        
Query: 362  acattgccttctgcggaaacatccctccttaactttgacccttccgcttcagtttcaaac 421
            ||||| ||||||||  ||||||||||||| | ||||| |||||| ||||||  ||| |||
Sbjct: 1076 acattaccttctgctaaaacatccctcctaagctttgccccttcagcttcaccttcgaac 1017

                                                                        
Query: 422  tggaaactctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatcaatg 481
            || |||||||| || ||||||||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 1016 tgaaaactctccaagtcaaaaagaggtccttcatcagttccttgaaaaagatcatcaatg 957

                                                                        
Query: 482  ggtaaggtagctaaacatataaggcggcagtgatgattgtacatctcatcaataagggtg 541
            | | ||| ||||| ||||| ||| ||||||||||||||||| | ||||||||||||||||
Sbjct: 956  gatgaggcagctagacatacaagacggcagtgatgattgtagagctcatcaataagggtg 897

                                                                        
Query: 542  atgaatcttcttgccttgtcacggatcttcatactcatagctggaaggtctgatatgaaa 601
            || ||||||||||| |||||||| ||||||||||||||||||||||  || |||||||||
Sbjct: 896  ataaatcttcttgctttgtcacgaatcttcatactcatagctggaatatccgatatgaaa 837

                                                                       
Query: 602  attgtatggtagttcctggctattgctatataatctgcagctccgactgggcgtccaca 660
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 836  attgtatggtagttcctggctattgctatatagtctgcagctccaactgggcggccaca 778

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>gb|AY107030.1| Zea mays PCO111338 mRNA sequence
          Length = 488

 Score =  214 bits (108), Expect = 3e-52
 Identities = 210/244 (86%)
 Strand = Plus / Minus

                                                                       
Query: 239 acacgctcgagatacaacggggtctgcatttctatgagccgagatatcgcccttcggaac 298
           |||||||| ||||||| |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 265 acacgctccagatacagcggggtctgcatctcgataagccgtgatatcgccctgcggaac 206

                                                                       
Query: 299 gcaaacatctcttcttgaccagacagcattgacactagacctttagtagagggtcctaca 358
           |||||||||||||||||||||||||  || | ||| || ||  ||||||| ||||||   
Sbjct: 205 gcaaacatctcttcttgaccagacaatatcgccacaaggccggtagtagatggtcctgag 146

                                                                       
Query: 359 ccaacattgccttctgcggaaacatccctccttaactttgacccttccgcttcagtttca 418
           ||| |||||||||| ||  ||||||||||||| | ||||| |||||| |  || ||||||
Sbjct: 145 ccagcattgccttccgccaaaacatccctcctcagctttgtcccttcggactcggtttca 86

                                                                       
Query: 419 aactggaaactctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatca 478
           ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 85  aactgaaaactctctaaatcaaaaagaggtccttcctcagttccttgaaaaagatcatca 26

               
Query: 479 atgg 482
           ||||
Sbjct: 25  atgg 22

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  139 bits (70), Expect = 1e-29
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                            
Query: 428      ctctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatcaatgggtaag 487
                ||||| || ||||||||||| ||||| |||||||||||||| |||| |||||||| | ||
Sbjct: 35566286 ctctccaagtcaaaaagaggtccttcatcagttccttgaaaaagatcatcaatggatgag 35566345

                                                                            
Query: 488      gtagctaaacatataaggcggcagtgatgattgtacatctcatcaataagggtgatgaat 547
                | ||||| ||||| ||| ||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 35566346 gcagctagacatacaagacggcagtgatgattgtagagctcatcaataagggtgataaat 35566405

                          
Query: 548      cttcttgcct 557
                ||||||||||
Sbjct: 35566406 cttcttgcct 35566415



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                            
Query: 557      ttgtcacggatcttcatactcatagctggaaggtctgatatgaaaattgtatggtagttc 616
                |||||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 35566781 ttgtcacgaatcttcatactcatagctggaatatccgatatgaaaattgtatggtagttc 35566840

                                             
Query: 617      ctggctattgctatataatctgcagctcc 645
                ||||||||||||||||| |||||||||||
Sbjct: 35566841 ctggctattgctatatagtctgcagctcc 35566869



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 120/144 (83%)
 Strand = Plus / Plus

                                                                            
Query: 286      cgcccttcggaacgcaaacatctcttcttgaccagacagcattgacactagacctttagt 345
                |||||| ||||| ||||||||||||||||| |||||||  |||| |||||| ||| ||| 
Sbjct: 35566016 cgccctacggaatgcaaacatctcttcttggccagacaaaattgccactaggcctgtagg 35566075

                                                                            
Query: 346      agagggtcctacaccaacattgccttctgcggaaacatccctccttaactttgacccttc 405
                ||| ||  || |||||||||| ||||||||  ||||||||||||| | ||||| ||||||
Sbjct: 35566076 agaaggcgctgcaccaacattaccttctgctaaaacatccctcctaagctttgccccttc 35566135

                                        
Query: 406      cgcttcagtttcaaactggaaact 429
                 ||||||  ||| ||||| |||||
Sbjct: 35566136 agcttcaccttcgaactgaaaact 35566159



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 242      cgctcgagatacaacggggtctgcatttctatgagccgagatatc 286
                ||||| |||||||  | |||||||||||||||||| || ||||||
Sbjct: 35565100 cgctccagatacagtgaggtctgcatttctatgagacgggatatc 35565144

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  139 bits (70), Expect = 1e-29
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                            
Query: 428      ctctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatcaatgggtaag 487
                ||||| || ||||||||||| ||||| |||||||||||||| |||| |||||||| | ||
Sbjct: 35656358 ctctccaagtcaaaaagaggtccttcatcagttccttgaaaaagatcatcaatggatgag 35656417

                                                                            
Query: 488      gtagctaaacatataaggcggcagtgatgattgtacatctcatcaataagggtgatgaat 547
                | ||||| ||||| ||| ||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 35656418 gcagctagacatacaagacggcagtgatgattgtagagctcatcaataagggtgataaat 35656477

                          
Query: 548      cttcttgcct 557
                ||||||||||
Sbjct: 35656478 cttcttgcct 35656487



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                            
Query: 557      ttgtcacggatcttcatactcatagctggaaggtctgatatgaaaattgtatggtagttc 616
                |||||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 35656853 ttgtcacgaatcttcatactcatagctggaatatccgatatgaaaattgtatggtagttc 35656912

                                             
Query: 617      ctggctattgctatataatctgcagctcc 645
                ||||||||||||||||| |||||||||||
Sbjct: 35656913 ctggctattgctatatagtctgcagctcc 35656941



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 120/144 (83%)
 Strand = Plus / Plus

                                                                            
Query: 286      cgcccttcggaacgcaaacatctcttcttgaccagacagcattgacactagacctttagt 345
                |||||| ||||| ||||||||||||||||| |||||||  |||| |||||| ||| ||| 
Sbjct: 35656088 cgccctacggaatgcaaacatctcttcttggccagacaaaattgccactaggcctgtagg 35656147

                                                                            
Query: 346      agagggtcctacaccaacattgccttctgcggaaacatccctccttaactttgacccttc 405
                ||| ||  || |||||||||| ||||||||  ||||||||||||| | ||||| ||||||
Sbjct: 35656148 agaaggcgctgcaccaacattaccttctgctaaaacatccctcctaagctttgccccttc 35656207

                                        
Query: 406      cgcttcagtttcaaactggaaact 429
                 ||||||  ||| ||||| |||||
Sbjct: 35656208 agcttcaccttcgaactgaaaact 35656231



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 242      cgctcgagatacaacggggtctgcatttctatgagccgagatatc 286
                ||||| |||||||  | |||||||||||||||||| || ||||||
Sbjct: 35655172 cgctccagatacagtgaggtctgcatttctatgagacgggatatc 35655216

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>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete
             sequence
          Length = 145290

 Score =  139 bits (70), Expect = 1e-29
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                         
Query: 428   ctctctaaatcaaaaagaggcccttcctcagttccttgaaacagattatcaatgggtaag 487
             ||||| || ||||||||||| ||||| |||||||||||||| |||| |||||||| | ||
Sbjct: 99249 ctctccaagtcaaaaagaggtccttcatcagttccttgaaaaagatcatcaatggatgag 99308

                                                                         
Query: 488   gtagctaaacatataaggcggcagtgatgattgtacatctcatcaataagggtgatgaat 547
             | ||||| ||||| ||| ||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 99309 gcagctagacatacaagacggcagtgatgattgtagagctcatcaataagggtgataaat 99368

                       
Query: 548   cttcttgcct 557
             ||||||||||
Sbjct: 99369 cttcttgcct 99378



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                         
Query: 557   ttgtcacggatcttcatactcatagctggaaggtctgatatgaaaattgtatggtagttc 616
             |||||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 99744 ttgtcacgaatcttcatactcatagctggaatatccgatatgaaaattgtatggtagttc 99803

                                          
Query: 617   ctggctattgctatataatctgcagctcc 645
             ||||||||||||||||| |||||||||||
Sbjct: 99804 ctggctattgctatatagtctgcagctcc 99832



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 120/144 (83%)
 Strand = Plus / Plus

                                                                         
Query: 286   cgcccttcggaacgcaaacatctcttcttgaccagacagcattgacactagacctttagt 345
             |||||| ||||| ||||||||||||||||| |||||||  |||| |||||| ||| ||| 
Sbjct: 98979 cgccctacggaatgcaaacatctcttcttggccagacaaaattgccactaggcctgtagg 99038

                                                                         
Query: 346   agagggtcctacaccaacattgccttctgcggaaacatccctccttaactttgacccttc 405
             ||| ||  || |||||||||| ||||||||  ||||||||||||| | ||||| ||||||
Sbjct: 99039 agaaggcgctgcaccaacattaccttctgctaaaacatccctcctaagctttgccccttc 99098

                                     
Query: 406   cgcttcagtttcaaactggaaact 429
              ||||||  ||| ||||| |||||
Sbjct: 99099 agcttcaccttcgaactgaaaact 99122



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 242   cgctcgagatacaacggggtctgcatttctatgagccgagatatc 286
             ||||| |||||||  | |||||||||||||||||| || ||||||
Sbjct: 98063 cgctccagatacagtgaggtctgcatttctatgagacgggatatc 98107

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>ref|NM_128110.2| Arabidopsis thaliana ATPase AT2G25530 mRNA, complete cds
          Length = 2128

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 103/128 (80%)
 Strand = Plus / Minus

                                                                        
Query: 512  tgatgattgtacatctcatcaataagggtgatgaatcttcttgccttgtcacggatcttc 571
            ||||| ||||| | |||||| | |||||| || || || | ||||||||| || |||| |
Sbjct: 1658 tgatggttgtataactcatctacaagggttataaacctacgtgccttgtcgcgtatctcc 1599

                                                                        
Query: 572  atactcatagctggaaggtctgatatgaaaattgtatggtagttcctggctattgctata 631
            || ||||| |||||||  || ||||| ||||||||||| |||||  |||| | ||| |||
Sbjct: 1598 atgctcattgctggaatatcagatataaaaattgtatgatagtttttggccactgcgata 1539

                    
Query: 632  taatctgc 639
            ||||||||
Sbjct: 1538 taatctgc 1531

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>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete
             sequence
          Length = 193184

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 415   ttcaaactggaaactctctaaatca 439
             |||||||||||||||||||||||||
Sbjct: 48249 ttcaaactggaaactctctaaatca 48273

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>gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B15 map mi238, complete
             sequence
          Length = 88770

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                         
Query: 555   ccttgtcacggatcttcatactcatagctggaaggtctgatatgaaaattgtatggtagt 614
             ||||||| || |||| ||| ||||| |||||||  || ||||| ||||||||||| ||||
Sbjct: 64907 ccttgtcgcgtatctccatgctcattgctggaatatcagatataaaaattgtatgatagt 64848

                                      
Query: 615   tcctggctattgctatataatctgc 639
             |  |||| | ||| |||||||||||
Sbjct: 64847 ttttggccactgcgatataatctgc 64823

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>gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome 18, complete sequence
          Length = 208705

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 415   ttcaaactggaaactctctaaatca 439
             |||||||||||||||||||||||||
Sbjct: 25892 ttcaaactggaaactctctaaatca 25868

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>ref|NM_146982.1| Mus musculus olfactory receptor 1257 (Olfr1257), mRNA
          Length = 930

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 473 ttatcaatgggtaaggtagcta 494
           ||||||||||||||||||||||
Sbjct: 800 ttatcaatgggtaaggtagcta 779

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>gb|AY318459.1| Mus musculus olfactory receptor Olfr1257 (Olfr1257) gene, complete
           cds
          Length = 930

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 473 ttatcaatgggtaaggtagcta 494
           ||||||||||||||||||||||
Sbjct: 800 ttatcaatgggtaaggtagcta 779

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>gb|AC125146.3| Mus musculus BAC clone RP24-348B1 from chromosome 2, complete sequence
          Length = 212563

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 473   ttatcaatgggtaaggtagcta 494
             ||||||||||||||||||||||
Sbjct: 95264 ttatcaatgggtaaggtagcta 95285

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>gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, complete sequence
          Length = 199117

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 595   tatgaaaattgtatggtagttc 616
             ||||||||||||||||||||||
Sbjct: 65842 tatgaaaattgtatggtagttc 65863

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>ref|NM_001000572.1| Rattus norvegicus olfactory receptor 722 (predicted)
           (Olr722_predicted), mRNA
          Length = 930

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 473 ttatcaatgggtaaggtagcta 494
           ||||||||||||||||||||||
Sbjct: 800 ttatcaatgggtaaggtagcta 779

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>gb|AY073106.1| Mus musculus olfactory receptor MOR232-1 gene, complete cds
          Length = 930

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 473 ttatcaatgggtaaggtagcta 494
           ||||||||||||||||||||||
Sbjct: 800 ttatcaatgggtaaggtagcta 779

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>gb|AC156038.2| Mus musculus BAC clone RP23-250I2 from 16, complete sequence
          Length = 202844

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 595    tatgaaaattgtatggtagttc 616
              ||||||||||||||||||||||
Sbjct: 171236 tatgaaaattgtatggtagttc 171257

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>emb|AL953900.7| Mouse DNA sequence from clone RP24-166A20 on chromosome 2, complete
             sequence
          Length = 131582

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 473   ttatcaatgggtaaggtagcta 494
             ||||||||||||||||||||||
Sbjct: 30622 ttatcaatgggtaaggtagcta 30601

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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 463     ttgaaacagattatcaatggg 483
               |||||||||||||||||||||
Sbjct: 1881204 ttgaaacagattatcaatggg 1881224

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>gb|AY256959.1| Streptococcus agalactiae 1,6-alpha-glucosidase (dexB) gene, partial
            cds; UDP glucose 4-epimerase (galE), DNA-binding
            activator protein (rheB), sensor histidine kinase (rheA),
            and L-malate permease (malP) genes, complete cds; and
            S-malate:NAD+ oxidoreductase (malO) gene, partial cds
          Length = 6131

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 463  ttgaaacagattatcaatggg 483
            |||||||||||||||||||||
Sbjct: 2656 ttgaaacagattatcaatggg 2636

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>gb|AE014278.1| Streptococcus agalactiae 2603V/R section 88 of 100 of the complete
             genome
          Length = 20610

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   ttgaaacagattatcaatggg 483
             |||||||||||||||||||||
Sbjct: 10747 ttgaaacagattatcaatggg 10767

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>emb|AL766854.1|SAG766854 Streptococcus agalactiae NEM316 complete genome, segment 12
          Length = 98050

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   ttgaaacagattatcaatggg 483
             |||||||||||||||||||||
Sbjct: 59316 ttgaaacagattatcaatggg 59336

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>gb|AC154830.2| Mus musculus BAC clone RP24-553I3 from chromosome 13, complete sequence
          Length = 178942

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 599   aaaattgtatggtagttcctg 619
             |||||||||||||||||||||
Sbjct: 74163 aaaattgtatggtagttcctg 74143

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>gb|AC154869.3| Monodelphis domestica, clone XX-216E9, complete sequence
          Length = 159803

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    acttgtgttacatacatatac 43
             |||||||||||||||||||||
Sbjct: 38098 acttgtgttacatacatatac 38078

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>gb|AC151843.3| Mus musculus BAC clone RP23-88K14 from chromosome 10, complete sequence
          Length = 268516

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tgaagcccagaagaatggac 231
             ||||||||||||||||||||
Sbjct: 66469 tgaagcccagaagaatggac 66488

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>gb|AC124573.4| Mus musculus BAC clone RP23-159F13 from 10, complete sequence
          Length = 191206

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tgaagcccagaagaatggac 231
              ||||||||||||||||||||
Sbjct: 121923 tgaagcccagaagaatggac 121942

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>ref|XM_724243.1| Plasmodium yoelii yoelii str. 17XNL m1-family aminopeptidase
            (PY01557) partial mRNA
          Length = 3195

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  ataagggtgatgaatcttct 552
            ||||||||||||||||||||
Sbjct: 1603 ataagggtgatgaatcttct 1584

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>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence
          Length = 70276

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  tccttaactttgacccttcc 406
            ||||||||||||||||||||
Sbjct: 7591 tccttaactttgacccttcc 7610

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>ref|XM_739947.1| Plasmodium chabaudi chabaudi m1-family aminopeptidase (PC001408.02.0)
            partial mRNA
          Length = 2688

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  ataagggtgatgaatcttct 552
            ||||||||||||||||||||
Sbjct: 1096 ataagggtgatgaatcttct 1077

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>emb|AL445650.9| Human DNA sequence from clone RP11-152K20 on chromosome 1 Contains the
             5' end of the USH2A gene for Usher syndrome 2A (autosomal
             recessive, mild) and the 3' end of the ESRRG gene for
             estrogen-related receptor gamma, complete sequence
          Length = 153705

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   aaaattgtatggtagttcct 618
             ||||||||||||||||||||
Sbjct: 73973 aaaattgtatggtagttcct 73954

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>gb|AC158585.3| Mus musculus chromosome 5, clone RP24-250F5, complete sequence
          Length = 158066

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ctgctgttgttgaagcccag 221
            ||||||||||||||||||||
Sbjct: 6031 ctgctgttgttgaagcccag 6012

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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     attatttttacaggaacgaa 128
               ||||||||||||||||||||
Sbjct: 2008601 attatttttacaggaacgaa 2008582

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>emb|CR450778.7| Zebrafish DNA sequence from clone DKEY-14I6 in linkage group 8,
             complete sequence
          Length = 120755

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   ctgatatgaaaattgtatgg 610
             ||||||||||||||||||||
Sbjct: 75276 ctgatatgaaaattgtatgg 75295

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>gb|AC120128.17| Mus musculus chromosome 5, clone RP23-181F22, complete sequence
          Length = 213246

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ctgctgttgttgaagcccag 221
             ||||||||||||||||||||
Sbjct: 58008 ctgctgttgttgaagcccag 58027

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>dbj|AK125720.1| Homo sapiens cDNA FLJ43732 fis, clone TESTI1000491
          Length = 3097

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 418 aaactggaaactctctaaat 437
           ||||||||||||||||||||
Sbjct: 656 aaactggaaactctctaaat 637

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>gb|AC073370.7| Homo sapiens chromosome 10 clone RP11-472G21, complete sequence
          Length = 178253

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 451    ttcctcagttccttgaaaca 470
              ||||||||||||||||||||
Sbjct: 115488 ttcctcagttccttgaaaca 115507

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>gb|AC137894.5| Homo sapiens chromosome 11, clone RP13-46H24, complete sequence
          Length = 165000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   aaactggaaactctctaaat 437
             ||||||||||||||||||||
Sbjct: 97534 aaactggaaactctctaaat 97515

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>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence
          Length = 169697

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   aaagaggcccttcctcagtt 460
             ||||||||||||||||||||
Sbjct: 42310 aaagaggcccttcctcagtt 42329

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>gb|AC119998.13| Mus musculus chromosome 17, clone RP24-128A6, complete sequence
          Length = 172124

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gctgttgttgaagcccagaa 223
             ||||||||||||||||||||
Sbjct: 85633 gctgttgttgaagcccagaa 85652

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>emb|BX004774.4| Zebrafish DNA sequence from clone CH211-133L5, complete sequence
          Length = 186380

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 591    ctgatatgaaaattgtatgg 610
              ||||||||||||||||||||
Sbjct: 130334 ctgatatgaaaattgtatgg 130353

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>gb|AC127581.4| Mus musculus BAC clone RP24-88B13 from 9, complete sequence
          Length = 204684

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    actgagagacagtgctctgt 181
              ||||||||||||||||||||
Sbjct: 136929 actgagagacagtgctctgt 136948

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>gb|AC139108.3| Mus musculus BAC clone RP23-93M1 from 9, complete sequence
          Length = 269739

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    actgagagacagtgctctgt 181
              ||||||||||||||||||||
Sbjct: 265277 actgagagacagtgctctgt 265296

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>emb|AL844225.9| Mouse DNA sequence from clone RP23-119M24 on chromosome 2, complete
              sequence
          Length = 137220

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 588    ggtctgatatgaaaattgta 607
              ||||||||||||||||||||
Sbjct: 117235 ggtctgatatgaaaattgta 117216

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>gb|U73630.1|U73630 Human Chromosome 11 Overlapping Cosmids cSRL125c1 and cSRL135f4,
            complete sequence
          Length = 43105

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  aaactggaaactctctaaat 437
            ||||||||||||||||||||
Sbjct: 7261 aaactggaaactctctaaat 7242


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,718,255
Number of Sequences: 3902068
Number of extensions: 5718255
Number of successful extensions: 101303
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101172
Number of HSP's gapped (non-prelim): 130
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result