ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
2dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
3dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4ref|NM_183835.1| Oryza sativa (japonica cultivar-group), predic... 115 2e-22
5ref|NM_100129.2| Arabidopsis thaliana unknown protein AT1G02475 ... 50 0.009
6gb|AY063040.1| Arabidopsis thaliana unknown protein (At1g02475) ... 50 0.009
7gb|AF370292.1| Arabidopsis thaliana unknown protein (At1g02475) ... 50 0.009
8gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BAC T14... 50 0.009
9dbj|AK176092.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 50 0.009
10ref|NM_001036495.1| Arabidopsis thaliana unknown protein AT4G018... 48 0.036
11gb|DQ108702.1| Arabidopsis thaliana clone 11468 mRNA sequence 48 0.036
12gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete se... 44 0.57
13gb|AC044860.11| Homo sapiens chromosome 15, clone RP11-561C5, co... 44 0.57
14gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromo... 44 0.57
15gb|AC012064.3|AC012064 Homo sapiens BAC clone RP11-123N1 from 15... 44 0.57
16emb|BX817365.1|CNS0ACR0 Arabidopsis thaliana Full-length cDNA Co... 44 0.57
17gb|AC146099.3| Pan troglodytes BAC clone RP43-5L2 from chromosom... 44 0.57
18gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, c... 44 0.57
19dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 44 0.57
20emb|CT009580.9| Mouse DNA sequence from clone RP23-133F14 on chr... 44 0.57
21gb|AC166114.5| Mus musculus BAC clone RP23-63J20 from chromosome... 42 2.2
22gb|AC124423.3| Mus musculus BAC clone RP24-328B20 from chromosom... 42 2.2
23gb|AC142526.5| Medicago truncatula clone mth2-34h20, complete se... 42 2.2
24gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosom... 42 2.2
25gb|AC154529.2| Mus musculus BAC clone RP23-463N16 from 16, compl... 42 2.2
26gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete... 40 8.9
27ref|XM_642922.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.9
28gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, comp... 40 8.9
29gb|AC104010.21| Homo sapiens chromosome 11, clone RP11-244C20, c... 40 8.9
30emb|CR354543.13| Zebrafish DNA sequence from clone DKEY-14M15 in... 40 8.9
31gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell ... 40 8.9
32gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer... 40 8.9
33gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell... 40 8.9
34gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell... 40 8.9
35ref|NM_167000.1| Drosophila melanogaster CG32778-RA (CG32778), mRNA 40 8.9
36emb|BX828192.1|CNS0A2YJ Arabidopsis thaliana Full-length cDNA Co... 40 8.9
37gb|AC007946.6|AC007946 Drosophila melanogaster, chromosome 3R, r... 40 8.9
38gb|AC084556.1|CBRG35F02 Caenorhabditis briggsae cosmid G35F02, c... 40 8.9
39gb|AC007679.4| Homo sapiens BAC clone RP11-273D4 from 2, complet... 40 8.9
40gb|AC152169.2| Mus musculus BAC clone RP23-79L13 from chromosome... 40 8.9
41emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 ... 40 8.9
42gb|AE003752.2| Drosophila melanogaster chromosome 3R, section 90... 40 8.9
43gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 ... 40 8.9
44emb|AL773565.17| Mouse DNA sequence from clone RP23-76A20 on chr... 40 8.9
45gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complet... 40 8.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                            
Query: 467      accttgacagttgatatgaatggcatccactgaggaatagtctcacgttcggagtaacac 526
                |||||||||| ||| || ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 12634717 accttgacagatgagataaatggcatccattgaggaatggtctcacgttctgagtaacac 12634658

                                                            
Query: 527      tggtaggccactgaacatggaacatcaacttcaatctcagtgct 570
                || || ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 12634657 tgataagccactgaacagggaacatcgacttcaatctcggtgct 12634614



 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                            
Query: 374      gtcatgtttcgggcaagccaagaaaattctacatcctgaccaagtatcgcatacttcaaa 433
                ||||||||||| || ||||| ||||||||||||||  ||||||||||| |||||||||||
Sbjct: 12636084 gtcatgtttcgagctagccacgaaaattctacatctcgaccaagtatctcatacttcaaa 12636025

                                                  
Query: 434      gtccaacgggaaagatctggtttatcttcaagga 467
                |||||||| ||  |||||||||||||||||||||
Sbjct: 12636024 gtccaacgtgattgatctggtttatcttcaagga 12635991



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                            
Query: 141      tcttgctatagcgctccttcgcaaacgtcacaaaacgttctagcccattgaaaagcaaac 200
                |||||||||| || ||||||||||||||| | ||||||||||  || |  | |||||  |
Sbjct: 12636900 tcttgctatatcgttccttcgcaaacgtcgcgaaacgttctaaaccttgcataagcagcc 12636841

                                   
Query: 201      cttccagaaatggtttcag 219
                ||||||||||||| |||||
Sbjct: 12636840 cttccagaaatggcttcag 12636822



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 327      gaagaccttcaagagatcgccagtgaatcttctgatttttagt 369
                |||||||||||||||||||||| || ||||| || ||||||||
Sbjct: 12636208 gaagaccttcaagagatcgccaatggatcttttggtttttagt 12636166



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 569      ctgcactcctgccactccatggcccgaggggagaa 603
                ||||||||||||||||||||||||  |||||||||
Sbjct: 12633751 ctgcactcctgccactccatggccacaggggagaa 12633717



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 272      tgtactctacaagaggatgaactcttagggaagaatcggacagcgcccct 321
                |||||||| ||||||||||| || ||||| ||||| || ||||| |||||
Sbjct: 12636573 tgtactctgcaagaggatgagcttttaggaaagaaacgaacagcacccct 12636524



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 241      aatttcaggaacttcataggccactgttagctg 273
                |||||||||||||||||| ||||| || |||||
Sbjct: 12636699 aatttcaggaacttcataagccaccgtcagctg 12636667
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0537A05
          Length = 152396

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                          
Query: 467    accttgacagttgatatgaatggcatccactgaggaatagtctcacgttcggagtaacac 526
              |||||||||| ||| || ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 146327 accttgacagatgagataaatggcatccattgaggaatggtctcacgttctgagtaacac 146268

                                                          
Query: 527    tggtaggccactgaacatggaacatcaacttcaatctcagtgct 570
              || || ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 146267 tgataagccactgaacagggaacatcgacttcaatctcggtgct 146224



 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                          
Query: 374    gtcatgtttcgggcaagccaagaaaattctacatcctgaccaagtatcgcatacttcaaa 433
              ||||||||||| || ||||| ||||||||||||||  ||||||||||| |||||||||||
Sbjct: 147694 gtcatgtttcgagctagccacgaaaattctacatctcgaccaagtatctcatacttcaaa 147635

                                                
Query: 434    gtccaacgggaaagatctggtttatcttcaagga 467
              |||||||| ||  |||||||||||||||||||||
Sbjct: 147634 gtccaacgtgattgatctggtttatcttcaagga 147601



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                          
Query: 141    tcttgctatagcgctccttcgcaaacgtcacaaaacgttctagcccattgaaaagcaaac 200
              |||||||||| || ||||||||||||||| | ||||||||||  || |  | |||||  |
Sbjct: 148510 tcttgctatatcgttccttcgcaaacgtcgcgaaacgttctaaaccttgcataagcagcc 148451

                                 
Query: 201    cttccagaaatggtttcag 219
              ||||||||||||| |||||
Sbjct: 148450 cttccagaaatggcttcag 148432



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 327    gaagaccttcaagagatcgccagtgaatcttctgatttttagt 369
              |||||||||||||||||||||| || ||||| || ||||||||
Sbjct: 147818 gaagaccttcaagagatcgccaatggatcttttggtttttagt 147776



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 569    ctgcactcctgccactccatggcccgaggggagaa 603
              ||||||||||||||||||||||||  |||||||||
Sbjct: 145361 ctgcactcctgccactccatggccacaggggagaa 145327



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 272    tgtactctacaagaggatgaactcttagggaagaatcggacagcgcccct 321
              |||||||| ||||||||||| || ||||| ||||| || ||||| |||||
Sbjct: 148183 tgtactctgcaagaggatgagcttttaggaaagaaacgaacagcacccct 148134



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 241    aatttcaggaacttcataggccactgttagctg 273
              |||||||||||||||||| ||||| || |||||
Sbjct: 148309 aatttcaggaacttcataagccaccgtcagctg 148277
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0554D10
          Length = 158723

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                        
Query: 467  accttgacagttgatatgaatggcatccactgaggaatagtctcacgttcggagtaacac 526
            |||||||||| ||| || ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1746 accttgacagatgagataaatggcatccattgaggaatggtctcacgttctgagtaacac 1687

                                                        
Query: 527  tggtaggccactgaacatggaacatcaacttcaatctcagtgct 570
            || || ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1686 tgataagccactgaacagggaacatcgacttcaatctcggtgct 1643



 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                        
Query: 374  gtcatgtttcgggcaagccaagaaaattctacatcctgaccaagtatcgcatacttcaaa 433
            ||||||||||| || ||||| ||||||||||||||  ||||||||||| |||||||||||
Sbjct: 3113 gtcatgtttcgagctagccacgaaaattctacatctcgaccaagtatctcatacttcaaa 3054

                                              
Query: 434  gtccaacgggaaagatctggtttatcttcaagga 467
            |||||||| ||  |||||||||||||||||||||
Sbjct: 3053 gtccaacgtgattgatctggtttatcttcaagga 3020



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                        
Query: 141  tcttgctatagcgctccttcgcaaacgtcacaaaacgttctagcccattgaaaagcaaac 200
            |||||||||| || ||||||||||||||| | ||||||||||  || |  | |||||  |
Sbjct: 3929 tcttgctatatcgttccttcgcaaacgtcgcgaaacgttctaaaccttgcataagcagcc 3870

                               
Query: 201  cttccagaaatggtttcag 219
            ||||||||||||| |||||
Sbjct: 3869 cttccagaaatggcttcag 3851



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 327  gaagaccttcaagagatcgccagtgaatcttctgatttttagt 369
            |||||||||||||||||||||| || ||||| || ||||||||
Sbjct: 3237 gaagaccttcaagagatcgccaatggatcttttggtttttagt 3195



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 569 ctgcactcctgccactccatggcccgaggggagaa 603
           ||||||||||||||||||||||||  |||||||||
Sbjct: 780 ctgcactcctgccactccatggccacaggggagaa 746



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 272  tgtactctacaagaggatgaactcttagggaagaatcggacagcgcccct 321
            |||||||| ||||||||||| || ||||| ||||| || ||||| |||||
Sbjct: 3602 tgtactctgcaagaggatgagcttttaggaaagaaacgaacagcacccct 3553



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 241  aatttcaggaacttcataggccactgttagctg 273
            |||||||||||||||||| ||||| || |||||
Sbjct: 3728 aatttcaggaacttcataagccaccgtcagctg 3696
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>ref|NM_183835.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 279

 Score =  115 bits (58), Expect = 2e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                       
Query: 374 gtcatgtttcgggcaagccaagaaaattctacatcctgaccaagtatcgcatacttcaaa 433
           ||||||||||| || ||||| ||||||||||||||  ||||||||||| |||||||||||
Sbjct: 134 gtcatgtttcgagctagccacgaaaattctacatctcgaccaagtatctcatacttcaaa 75

                                             
Query: 434 gtccaacgggaaagatctggtttatcttcaagga 467
           |||||||| ||  |||||||||||||||||||||
Sbjct: 74  gtccaacgtgattgatctggtttatcttcaagga 41



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 103/124 (83%)
 Strand = Plus / Minus

                                                                       
Query: 141 tcttgctatagcgctccttcgcaaacgtcacaaaacgttctagcccattgaaaagcaaac 200
           |||||||||| || ||||||||||||||| | ||||||||||  || |  | |||||  |
Sbjct: 265 tcttgctatatcgttccttcgcaaacgtcgcgaaacgttctaaaccttgcataagcagcc 206

                                                                       
Query: 201 cttccagaaatggtttcagggctgatgcaaccgggttcagaatttcaggaacttcatagg 260
           ||||||||||||| ||||| ||||| ||||| ||   || |||||||||||||||||| |
Sbjct: 205 cttccagaaatggcttcagtgctgacgcaacaggtgccaaaatttcaggaacttcataag 146

               
Query: 261 ccac 264
           ||||
Sbjct: 145 ccac 142
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>ref|NM_100129.2| Arabidopsis thaliana unknown protein AT1G02475 mRNA, complete cds
          Length = 795

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 323 ttaggaagaccttcaagagatcgccagtgaatcttctgatt 363
           |||||||||||||||||||||| ||| || || ||||||||
Sbjct: 497 ttaggaagaccttcaagagatctccaatggattttctgatt 457
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>gb|AY063040.1| Arabidopsis thaliana unknown protein (At1g02475) mRNA, complete cds
          Length = 690

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 323 ttaggaagaccttcaagagatcgccagtgaatcttctgatt 363
           |||||||||||||||||||||| ||| || || ||||||||
Sbjct: 485 ttaggaagaccttcaagagatctccaatggattttctgatt 445
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>gb|AF370292.1| Arabidopsis thaliana unknown protein (At1g02475) mRNA, complete cds
          Length = 812

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 323 ttaggaagaccttcaagagatcgccagtgaatcttctgatt 363
           |||||||||||||||||||||| ||| || || ||||||||
Sbjct: 497 ttaggaagaccttcaagagatctccaatggattttctgatt 457
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>gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete
              sequence
          Length = 121668

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 323    ttaggaagaccttcaagagatcgccagtgaatcttctgatt 363
              |||||||||||||||||||||| ||| || || ||||||||
Sbjct: 103282 ttaggaagaccttcaagagatctccaatggattttctgatt 103242
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>dbj|AK176092.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-86-K15
          Length = 896

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 323 ttaggaagaccttcaagagatcgccagtgaatcttctgatt 363
           |||||||||||||||||||||| ||| || || ||||||||
Sbjct: 526 ttaggaagaccttcaagagatctccaatggattttctgatt 486
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>ref|NM_001036495.1| Arabidopsis thaliana unknown protein AT4G01883 mRNA, complete cds
          Length = 675

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 299 gggaagaatcggacagcgcccctgttaggaagaccttcaagaga 342
           ||||| || ||||||| |||| |||||||||| |||||||||||
Sbjct: 515 gggaaaaaccggacagtgcccttgttaggaagcccttcaagaga 472
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>gb|DQ108702.1| Arabidopsis thaliana clone 11468 mRNA sequence
          Length = 943

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 299 gggaagaatcggacagcgcccctgttaggaagaccttcaagaga 342
           ||||| || ||||||| |||| |||||||||| |||||||||||
Sbjct: 582 gggaaaaaccggacagtgcccttgttaggaagcccttcaagaga 539
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>gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete sequence
          Length = 106528

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 319   cctgttaggaagaccttcaagagatcgccagtgaatcttctgattt 364
             |||||| |||||||| || ||||||||||| || || |||||||||
Sbjct: 25334 cctgttgggaagaccatccagagatcgccaatggattttctgattt 25379
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>gb|AC044860.11| Homo sapiens chromosome 15, clone RP11-561C5, complete sequence
          Length = 233775

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 237    tcagaatttcaggaacttcata 258
              ||||||||||||||||||||||
Sbjct: 165094 tcagaatttcaggaacttcata 165115
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>gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromosome 15, complete
             sequence
          Length = 150565

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 237   tcagaatttcaggaacttcata 258
             ||||||||||||||||||||||
Sbjct: 47542 tcagaatttcaggaacttcata 47563
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>gb|AC012064.3|AC012064 Homo sapiens BAC clone RP11-123N1 from 15, complete sequence
          Length = 170520

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 237    tcagaatttcaggaacttcata 258
              ||||||||||||||||||||||
Sbjct: 108780 tcagaatttcaggaacttcata 108759
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>emb|BX817365.1|CNS0ACR0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL18ZF02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 367

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 323 ttaggaagaccttcaagagatc 344
           ||||||||||||||||||||||
Sbjct: 28  ttaggaagaccttcaagagatc 7
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>gb|AC146099.3| Pan troglodytes BAC clone RP43-5L2 from chromosome 7, complete sequence
          Length = 196770

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 237    tcagaatttcaggaacttcata 258
              ||||||||||||||||||||||
Sbjct: 119023 tcagaatttcaggaacttcata 119002
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>gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, complete sequence
          Length = 174192

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 237    tcagaatttcaggaacttcata 258
              ||||||||||||||||||||||
Sbjct: 128934 tcagaatttcaggaacttcata 128955
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 615     tcgcccttgccgtgctgctgct 636
               ||||||||||||||||||||||
Sbjct: 2151439 tcgcccttgccgtgctgctgct 2151460
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>emb|CT009580.9| Mouse DNA sequence from clone RP23-133F14 on chromosome 17, complete
              sequence
          Length = 191260

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 286    ggatgaactcttagggaagaat 307
              ||||||||||||||||||||||
Sbjct: 141638 ggatgaactcttagggaagaat 141659
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>gb|AC166114.5| Mus musculus BAC clone RP23-63J20 from chromosome 16, complete sequence
          Length = 207146

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 288    atgaactcttagggaagaatc 308
              |||||||||||||||||||||
Sbjct: 177888 atgaactcttagggaagaatc 177868
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>gb|AC124423.3| Mus musculus BAC clone RP24-328B20 from chromosome 8, complete sequence
          Length = 171403

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 561   tctcagtgctgcactcctgcc 581
             |||||||||||||||||||||
Sbjct: 60973 tctcagtgctgcactcctgcc 60953
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>gb|AC142526.5| Medicago truncatula clone mth2-34h20, complete sequence
          Length = 113622

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 86    aatgaaattgaaattcttggtgttg 110
             |||||| ||||||||||||||||||
Sbjct: 68121 aatgaagttgaaattcttggtgttg 68097
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>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 239   agaatttcaggaacttcatag 259
             |||||||||||||||||||||
Sbjct: 90694 agaatttcaggaacttcatag 90714
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>gb|AC154529.2| Mus musculus BAC clone RP23-463N16 from 16, complete sequence
          Length = 177958

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    atgaactcttagggaagaatc 308
              |||||||||||||||||||||
Sbjct: 142673 atgaactcttagggaagaatc 142693
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>gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete sequence
          Length = 161996

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   aatgaaattgaaattcttgg 105
            ||||||||||||||||||||
Sbjct: 6661 aatgaaattgaaattcttgg 6642
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>ref|XM_642922.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (628.t00001)
           partial mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 626 gtgctgctgctattggtgct 645
           ||||||||||||||||||||
Sbjct: 953 gtgctgctgctattggtgct 972
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>gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, complete sequence
          Length = 149157

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 597    gggagaacaaggcaggcctcgccc 620
              ||||||||||||||||||| ||||
Sbjct: 103370 gggagaacaaggcaggcctggccc 103347
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>gb|AC104010.21| Homo sapiens chromosome 11, clone RP11-244C20, complete sequence
          Length = 63480

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 594   gaggggagaacaaggcaggc 613
             ||||||||||||||||||||
Sbjct: 39138 gaggggagaacaaggcaggc 39157
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>emb|CR354543.13| Zebrafish DNA sequence from clone DKEY-14M15 in linkage group 13,
             complete sequence
          Length = 140709

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 147   tatagcgctccttcgcaaacgtca 170
             |||||||||||||| |||||||||
Sbjct: 93453 tatagcgctccttctcaaacgtca 93476
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>gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165928

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 620    cttgccgtgctgctgctattggtgctgc 647
              ||||||||||||||||| ||| ||||||
Sbjct: 112269 cttgccgtgctgctgctgttgttgctgc 112296
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>gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 118301

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ccagtgaatcttctgatttt 365
              ||||||||||||||||||||
Sbjct: 107816 ccagtgaatcttctgatttt 107797
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>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172784

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 620    cttgccgtgctgctgctattggtgctgc 647
              ||||||||||||||||| ||| ||||||
Sbjct: 147279 cttgccgtgctgctgctgttgttgctgc 147306
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>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181831

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 620    cttgccgtgctgctgctattggtgctgc 647
              ||||||||||||||||| ||| ||||||
Sbjct: 156588 cttgccgtgctgctgctgttgttgctgc 156561
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>ref|NM_167000.1| Drosophila melanogaster CG32778-RA (CG32778), mRNA
          Length = 2838

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 620  cttgccgtgctgctgctattggtgctgc 647
            ||||||||||||||||| ||| ||||||
Sbjct: 1593 cttgccgtgctgctgctgttgttgctgc 1566
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>emb|BX828192.1|CNS0A2YJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH61ZH09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1094

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 299 gggaagaatcggacagcgcccctgttaggaagaccttcaagaga 342
           ||||| || |||||||  ||| |||||||||| |||||||||||
Sbjct: 750 gggaaaaaccggacagtccccttgttaggaagcccttcaagaga 707
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>gb|AC007946.6|AC007946 Drosophila melanogaster, chromosome 3R, region 96E-96F, BAC clone
             BACR03O03, complete sequence
          Length = 132168

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aatgaaattgaaattcttgg 105
             ||||||||||||||||||||
Sbjct: 38087 aatgaaattgaaattcttgg 38106
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>gb|AC084556.1|CBRG35F02 Caenorhabditis briggsae cosmid G35F02, complete sequence
          Length = 41330

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 530  taggccactgaacatggaac 549
            ||||||||||||||||||||
Sbjct: 2510 taggccactgaacatggaac 2491
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>gb|AC007679.4| Homo sapiens BAC clone RP11-273D4 from 2, complete sequence
          Length = 170033

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 627   tgctgctgctattggtgctgccgc 650
             |||||||||||||| |||||||||
Sbjct: 84890 tgctgctgctattgctgctgccgc 84913
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>gb|AC152169.2| Mus musculus BAC clone RP23-79L13 from chromosome 14, complete sequence
          Length = 236748

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 520    gtaacactggtaggccactgaaca 543
              |||| |||||||||||||||||||
Sbjct: 110333 gtaagactggtaggccactgaaca 110356
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>emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 in linkage group 20,
              complete sequence
          Length = 161957

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    agtgaatcttctgattttta 367
              ||||||||||||||||||||
Sbjct: 143278 agtgaatcttctgattttta 143297
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>gb|AE003752.2| Drosophila melanogaster chromosome 3R, section 90 of 118 of the
             complete sequence
          Length = 188285

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aatgaaattgaaattcttgg 105
             ||||||||||||||||||||
Sbjct: 48601 aatgaaattgaaattcttgg 48620
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>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
              sequence
          Length = 326403

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 620    cttgccgtgctgctgctattggtgctgc 647
              ||||||||||||||||| ||| ||||||
Sbjct: 317142 cttgccgtgctgctgctgttgttgctgc 317115
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>emb|AL773565.17| Mouse DNA sequence from clone RP23-76A20 on chromosome X, complete
             sequence
          Length = 132915

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 627   tgctgctgctattggtgctg 646
             ||||||||||||||||||||
Sbjct: 78531 tgctgctgctattggtgctg 78550



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 627   tgctgctgctattggtgctg 646
             ||||||||||||||||||||
Sbjct: 60055 tgctgctgctattggtgctg 60036



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 627   tgctgctgctattggtgctg 646
             ||||||||||||||||||||
Sbjct: 23084 tgctgctgctattggtgctg 23065
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>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence
          Length = 217530

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   aggggagaacaaggcaggcc 614
             ||||||||||||||||||||
Sbjct: 91050 aggggagaacaaggcaggcc 91069


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,486,658
Number of Sequences: 3902068
Number of extensions: 5486658
Number of successful extensions: 161172
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161040
Number of HSP's gapped (non-prelim): 128
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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