ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12n06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: P... 34 0.14
2THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BT... 34 0.14
3THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: L... 34 0.14
4THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contain... 30 2.6

>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf|
           thionin; Acidic protein]
          Length = 137

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -3

Query: 51  CRTXVCDNMXNVSRXQE 1
           CRT VCDNM NVSR QE
Sbjct: 94  CRTSVCDNMDNVSRGQE 110



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>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic|
           protein]
          Length = 137

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -3

Query: 51  CRTXVCDNMXNVSRXQE 1
           CRT VCDNM NVSR QE
Sbjct: 94  CRTSVCDNMDNVSRGQE 110



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>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific|
           thionin; Acidic protein]
          Length = 137

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -3

Query: 51  CRTXVCDNMXNVSRXQE 1
           CRT VCDNM NVSR QE
Sbjct: 94  CRTSVCDNMDNVSRGQE 110



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>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:|
           Leaf-specific thionin DB4; Acidic protein]
          Length = 137

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  CRTXVCDNMXNVSRXQE 1
           CR  VCDNM NV R QE
Sbjct: 94  CRNSVCDNMDNVFRGQE 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,398,005
Number of Sequences: 219361
Number of extensions: 5922
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 80,573,946
effective HSP length: 0
effective length of database: 80,573,946
effective search space used: 1933774704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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