ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13b22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
2ref|NM_192811.1| Oryza sativa (japonica cultivar-group), predic... 363 5e-97
3gb|AY105958.1| Zea mays PCO114043 mRNA sequence 341 2e-90
4gb|AY109071.1| Zea mays PCO122073 mRNA sequence 291 1e-75
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
6dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
7dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-09
8ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative... 52 0.002
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 52 0.002
11dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
14ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/1... 44 0.58
15gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, com... 44 0.58
16emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.58
17gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, co... 44 0.58
18gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, co... 42 2.3
19gb|AC114986.13| Mus musculus chromosome 1, clone RP23-242G7, com... 42 2.3
20ref|XM_544750.2| PREDICTED: Canis familiaris similar to acheron ... 42 2.3
21gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, comple... 42 2.3
22dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 2.3
23gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, comple... 42 2.3
24emb|AL772323.8| Mouse DNA sequence from clone RP23-370F9 on chro... 42 2.3
25gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome... 40 9.1
26gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 9.1
27ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family... 40 9.1
28gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, co... 40 9.1
29ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin reco... 40 9.1
30ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical pro... 40 9.1
31ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG400... 40 9.1
32gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, ... 40 9.1
33emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (f... 40 9.1
34emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal bra... 40 9.1
35dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE10076... 40 9.1
36gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, com... 40 9.1
37gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, ... 40 9.1
38gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, ... 40 9.1
39gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 40 9.1
40gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, co... 40 9.1
41gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome... 40 9.1
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
43gb|AC009269.6|AC009269 Homo sapiens chromosome 15, clone RP11-13... 40 9.1
44gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Canc... 40 9.1
45gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, c... 40 9.1
46gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, c... 40 9.1
47gb|AF443829.1| Homo sapiens acheron mRNA, complete cds 40 9.1
48gb|AF443828.1| Homo sapiens acheron mRNA, complete cds 40 9.1
49dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059 40 9.1
50dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
51dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 40 9.1
52emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal... 40 9.1
53gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complet... 40 9.1
54gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complet... 40 9.1
55emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 40 9.1
56emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chro... 40 9.1 
>dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091N11, full
            insert sequence
          Length = 1327

 Score =  385 bits (194), Expect = e-103
 Identities = 407/478 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 245
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1149 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1090

                                                                        
Query: 246  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 305
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1089 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 1030

                                                                        
Query: 306  catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 365
            |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 1029 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 970

                                                                        
Query: 366  ttgtccctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagct 425
            |||| |||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 969  ttgttcctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagct 910

                                                                        
Query: 426  gagcagggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgt 485
            ||||||||||||| ||||||||||||||||| |||||| ||||||||||||| || || |
Sbjct: 909  gagcagggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttat 850

                                                                        
Query: 486  tcttctccaggttttcagcagaaaaacgtggatggcctttcagactagattcagcagaca 545
            |||||||||  |||||||||||||| |||||||| |||| || | |||||||||||||||
Sbjct: 849  tcttctccaaattttcagcagaaaatcgtggatgtccttgcaaattagattcagcagaca 790

                                                                        
Query: 546  cttgttgtgtcactccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaa 605
             ||||| ||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 789  attgttctgtcactcctctccctccgaaaaacccgcgggcgatagggctgtagggaacaa 730

                                                                      
Query: 606  ttgcaatccctagttctctgcagagaggcacaatctcgggctcgatgtcgcgtgccca 663
            || |||| || |  || |||||||| |||||||| ||||| || ||||| || |||||
Sbjct: 729  ttccaatgcccaactccctgcagagcggcacaatttcgggttcaatgtcacgagccca 672
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>ref|NM_192811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 888

 Score =  363 bits (183), Expect = 5e-97
 Identities = 357/415 (86%)
 Strand = Plus / Minus

                                                                       
Query: 198 acttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttc 257
           ||||||| ||||| || ||||| ||||||||| | |  |||||||| ||||| || ||||
Sbjct: 886 acttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgaggtatactgtcttc 827

                                                                       
Query: 258 caccggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtga 317
           |||| || |||||||||||||||| ||   |    |||||||| |||||||| || ||||
Sbjct: 826 caccagcgacatcttcttcgcgtacctggctagagatctctttcaggtcatcatccgtga 767

                                                                       
Query: 318 gcttcacctttaaggagtcaatgttggagtctagattcttgatcttagttgtccctggta 377
           | |||||||||||||||||||||||||  ||||| || || ||||| ||||| |||||||
Sbjct: 766 ggttcacctttaaggagtcaatgttggcatctaggttttttatcttggttgttcctggta 707

                                                                       
Query: 378 tcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagcagggctgc 437
           | || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 706 ttgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagcagggctgc 647

                                                                       
Query: 438 aatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttctccaggt 497
           | ||||||||||||||||| |||||| ||||||||||||| || || ||||||||||  |
Sbjct: 646 actggtgcttcttggccagctcttccgttttcagataaagctgtttattcttctccaaat 587

                                                                       
Query: 498 tttcagcagaaaaacgtggatggcctttcagactagattcagcagacacttgttgtgtca 557
           ||||||||||||| |||||||| |||| || | ||||||||||||||| ||||| |||||
Sbjct: 586 tttcagcagaaaatcgtggatgtccttgcaaattagattcagcagacaattgttctgtca 527

                                                                  
Query: 558 ctccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaattgcaat 612
           |||| || || ||||||||||| ||||| || |||||||||||||||||| ||||
Sbjct: 526 ctcctctccctccgaaaaacccgcgggcgatagggctgtagggaacaattccaat 472
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>gb|AY105958.1| Zea mays PCO114043 mRNA sequence
          Length = 1434

 Score =  341 bits (172), Expect = 2e-90
 Identities = 389/460 (84%), Gaps = 1/460 (0%)
 Strand = Plus / Minus

                                                                        
Query: 199  cttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttcc 258
            |||||| |||||||| || || |||||||||   |  |||||||||||  |||| |||||
Sbjct: 1115 cttctttggcgtatcagcgtacttccaggtggtatgtgcaaatgaagtgaattgtcttcc 1056

                                                                        
Query: 259  accggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtgag 318
            ||| |||||||||||||| |||||||   |||  || ||||| || || || ||||| ||
Sbjct: 1055 accagccacatcttcttcccgtatctggctgcccatttctttcagatcttcgtctgtcag 996

                                                                        
Query: 319  cttcacctttaaggagtcaatgttggagtctagattcttgatcttag-ttgtccctggta 377
             |||||||| ||||||||||||||||| |||||||||||||| || | ||||||||||||
Sbjct: 995  tttcaccttcaaggagtcaatgttggaatctagattcttgattttgggttgtccctggta 936

                                                                        
Query: 378  tcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagcagggctgc 437
            | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 935  taggaaccacatcatctccttgatgcagaacccatgctaaagctagctgagcagggctgc 876

                                                                        
Query: 438  aatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttctccaggt 497
            | |||||||| ||||||||||||||||||  || ||||| |||||||||||||||||  |
Sbjct: 875  actggtgcttattggccagttcttccattcgcaaataaatttgcttgttcttctccaaat 816

                                                                        
Query: 498  tttcagcagaaaaacgtggatggcctttcagactagattcagcagacacttgttgtgtca 557
            |||| | || ||| | |||    || | |||| ||||||||||||||||||||| | |||
Sbjct: 815  tttctggagcaaaccttgggatcccatgcagattagattcagcagacacttgttctttca 756

                                                                        
Query: 558  ctccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaattgcaatcccta 617
            |||| |||||||| |||||||||||| |||  || ||||| || |||||| |||| || |
Sbjct: 755  ctcctcttccaccaaaaaacccacggccaagaggactgtatggtacaattccaatgccca 696

                                                    
Query: 618  gttctctgcagagaggcacaatctcgggctcgatgtcgcg 657
             |||||||||||| |||||||| |||||||| ||||||||
Sbjct: 695  attctctgcagagcggcacaatttcgggctcaatgtcgcg 656
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>gb|AY109071.1| Zea mays PCO122073 mRNA sequence
          Length = 1331

 Score =  291 bits (147), Expect = 1e-75
 Identities = 342/407 (84%)
 Strand = Plus / Minus

                                                                        
Query: 248  tattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggtca 307
            ||||| |||||||| |||||||||||| | |||||||   ||| ||| || || ||||| 
Sbjct: 1123 tattgtcttccaccagccacatcttctgcacgtatctggctgccaatttccttcaggtcc 1064

                                                                        
Query: 308  tcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttagtt 367
            ||  |||||||||||||||| |||||||||| |||||  ||||| |||||  | || |||
Sbjct: 1063 tcagctgtgagcttcaccttcaaggagtcaacgttggcatctaggttcttcgtttttgtt 1004

                                                                        
Query: 368  gtccctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctga 427
            ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1003 gtccctggtataggaaccacatcatccccttgacgcagaacccaggctagagctagctga 944

                                                                        
Query: 428  gcagggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttc 487
            || |||||||| |||| |||||| ||||  ||||| |||||||| ||||  |||||||||
Sbjct: 943  gctgggctgcactggtacttcttcgccaaatcttctattttcaggtaaatctgcttgttc 884

                                                                        
Query: 488  ttctccaggttttcagcagaaaaacgtggatggcctttcagactagattcagcagacact 547
            ||||||| | |||| |  | ||| | |||||| | || |||||||||||||| ||| |||
Sbjct: 883  ttctccaagctttctgttgtaaatcttggatgcctttgcagactagattcagaagaaact 824

                                                                        
Query: 548  tgttgtgtcactccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaatt 607
            || ||| ||||||| |||||||| ||||| |||||| |||| || ||||| |  ||||||
Sbjct: 823  tgctgtatcactcctcttccaccaaaaaatccacggccaattggactgtaagccacaatt 764

                                                           
Query: 608  gcaatccctagttctctgcagagaggcacaatctcgggctcgatgtc 654
             ||||||| | |||||||||||| ||||| |||||||||||||||||
Sbjct: 763  ccaatccccaattctctgcagagtggcacgatctcgggctcgatgtc 717
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  194 bits (98), Expect = 3e-46
 Identities = 140/154 (90%)
 Strand = Plus / Plus

                                                                            
Query: 371      cctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagca 430
                |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 24576720 cctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagca 24576779

                                                                            
Query: 431      gggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttc 490
                |||||||| ||||||||||||||||| |||||| ||||||||||||| || || ||||||
Sbjct: 24576780 gggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttattcttc 24576839

                                                  
Query: 491      tccaggttttcagcagaaaaacgtggatggcctt 524
                ||||  |||||||||||||| |||||||| ||||
Sbjct: 24576840 tccaaattttcagcagaaaatcgtggatgtcctt 24576873



 Score =  105 bits (53), Expect = 2e-19
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                            
Query: 186      ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 245
                |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 24575936 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 24575995

                                                                            
Query: 246      tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 305
                |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 24575996 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 24576055

                                                                            
Query: 306      catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 365
                |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 24576056 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 24576115

                         
Query: 366      ttgtccctg 374
                |||| ||||
Sbjct: 24576116 ttgttcctg 24576124



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                            
Query: 531      tagattcagcagacacttgttgtgtcactccccttccaccgaaaaacccacgggcaatcg 590
                ||||||||||||||| ||||| ||||||||| || || ||||||||||| ||||| || |
Sbjct: 24576969 tagattcagcagacaattgttctgtcactcctctccctccgaaaaacccgcgggcgatag 24577028

                                      
Query: 591      ggctgtagggaacaattgcaat 612
                ||||||||||||||||| ||||
Sbjct: 24577029 ggctgtagggaacaattccaat 24577050
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score =  194 bits (98), Expect = 3e-46
 Identities = 140/154 (90%)
 Strand = Plus / Plus

                                                                        
Query: 371  cctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagca 430
            |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 2683 cctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagca 2742

                                                                        
Query: 431  gggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttc 490
            |||||||| ||||||||||||||||| |||||| ||||||||||||| || || ||||||
Sbjct: 2743 gggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttattcttc 2802

                                              
Query: 491  tccaggttttcagcagaaaaacgtggatggcctt 524
            ||||  |||||||||||||| |||||||| ||||
Sbjct: 2803 tccaaattttcagcagaaaatcgtggatgtcctt 2836



 Score =  105 bits (53), Expect = 2e-19
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                        
Query: 186  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 245
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1899 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1958

                                                                        
Query: 246  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 305
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1959 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 2018

                                                                        
Query: 306  catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 365
            |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 2019 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 2078

                     
Query: 366  ttgtccctg 374
            |||| ||||
Sbjct: 2079 ttgttcctg 2087



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                        
Query: 531  tagattcagcagacacttgttgtgtcactccccttccaccgaaaaacccacgggcaatcg 590
            ||||||||||||||| ||||| ||||||||| || || ||||||||||| ||||| || |
Sbjct: 2932 tagattcagcagacaattgttctgtcactcctctccctccgaaaaacccgcgggcgatag 2991

                                  
Query: 591  ggctgtagggaacaattgcaat 612
            ||||||||||||||||| ||||
Sbjct: 2992 ggctgtagggaacaattccaat 3013
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                          
Query: 186    ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 245
              |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 156320 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 156379

                                                  
Query: 246    tatattgccttccaccggccacatcttcttcgcgta 281
              |||| || |||||||| || ||||||||||||||||
Sbjct: 156380 tatactgtcttccaccagcgacatcttcttcgcgta 156415
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>ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative polyprotein
           (OSJNBa0006I13.8), mRNA
          Length = 1305

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 380 ggaaccacatcatccccttgatgcagaacccagg 413
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 839 ggaacaacatcatccccttgatgaagaacccagg 806
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 380      ggaaccacatcatccccttgatgcagaacccagg 413
                ||||| ||||||||||||||||| ||||||||||
Sbjct: 14220328 ggaacaacatcatccccttgatgaagaacccagg 14220295
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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
             complete sequence
          Length = 142737

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 380   ggaaccacatcatccccttgatgcagaacccagg 413
             ||||| ||||||||||||||||| ||||||||||
Sbjct: 92401 ggaacaacatcatccccttgatgaagaacccagg 92368
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>dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145C18, full
           insert sequence
          Length = 1334

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 380 ggaaccacatcatccccttgatgcagaacccagg 413
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 920 ggaacaacatcatccccttgatgaagaacccagg 887
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>dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H09, full
           insert sequence
          Length = 1355

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 380 ggaaccacatcatccccttgatgcagaacccagg 413
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 935 ggaacaacatcatccccttgatgaagaacccagg 902
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 380      ggaaccacatcatccccttgatgcagaacccagg 413
                ||||| ||||||||||||||||| ||||||||||
Sbjct: 14228570 ggaacaacatcatccccttgatgaagaacccagg 14228537
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>ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/130) (FYB), mRNA
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 168  atcactgtctccacaatctttt 189
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, complete sequence
          Length = 146346

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 310    ttctgtgagcttcacctttaaggagtcaat 339
              |||||||| ||| |||||||||||||||||
Sbjct: 114836 ttctgtgaccttgacctttaaggagtcaat 114865
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>emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clone 32b13
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 168  atcactgtctccacaatctttt 189
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence
          Length = 179495

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 310  ttctgtgagcttcacctttaaggagtcaat 339
            |||||||| ||| |||||||||||||||||
Sbjct: 5189 ttctgtgaccttgacctttaaggagtcaat 5160
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>gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, complete sequence
          Length = 196891

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 464    attttcagataaagttgcttgttct 488
              |||||||||||| ||||||||||||
Sbjct: 153846 attttcagataatgttgcttgttct 153870
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>gb|AC114986.13| Mus musculus chromosome 1, clone RP23-242G7, complete sequence
          Length = 195146

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 464    attttcagataaagttgcttgttct 488
              |||||||||||| ||||||||||||
Sbjct: 192475 attttcagataatgttgcttgttct 192499
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>ref|XM_544750.2| PREDICTED: Canis familiaris similar to acheron isoform 1
           (LOC487625), mRNA
          Length = 2254

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 487 cttctccaggttttcagcagaaaaa 511
           |||||||||||||||| ||||||||
Sbjct: 633 cttctccaggttttcatcagaaaaa 609
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>gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, complete sequence
          Length = 183554

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    cttccaccggccacatcttct 274
              |||||||||||||||||||||
Sbjct: 138871 cttccaccggccacatcttct 138851
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 501     cagcagaaaaacgtggatggc 521
               |||||||||||||||||||||
Sbjct: 3013634 cagcagaaaaacgtggatggc 3013614
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>gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, complete sequence
          Length = 256632

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    cttccaccggccacatcttct 274
              |||||||||||||||||||||
Sbjct: 151824 cttccaccggccacatcttct 151844
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>emb|AL772323.8| Mouse DNA sequence from clone RP23-370F9 on chromosome 2, complete
             sequence
          Length = 212243

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 422   agctgagcagggctgcaatgg 442
             |||||||||||||||||||||
Sbjct: 66863 agctgagcagggctgcaatgg 66883
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>gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome 16, complete sequence
          Length = 189550

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   cacaatcttttttagtttca 198
             ||||||||||||||||||||
Sbjct: 33342 cacaatcttttttagtttca 33361
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 553   tgtcactccccttccaccgaaaaa 576
             ||||||||||||||||| ||||||
Sbjct: 61497 tgtcactccccttccacagaaaaa 61474
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>ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family, member 6 (LARP6),
           transcript variant 1, mRNA
          Length = 2065

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 404 cttctccaggttttcatcagaaaa 381
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>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence
          Length = 211576

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 543    acacttgttgtgtcactccc 562
              ||||||||||||||||||||
Sbjct: 102479 acacttgttgtgtcactccc 102498
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>ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin recognition complex
           subunit 2 (PY03235) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  gacaattcacaagatgaaga 110
           ||||||||||||||||||||
Sbjct: 106 gacaattcacaagatgaaga 125
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>ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical protein (PB000518.03.0)
            partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   gacaattcacaagatgaaga 110
            ||||||||||||||||||||
Sbjct: 1078 gacaattcacaagatgaaga 1097
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>ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG40084-PC.3 (LOC657784),
           mRNA
          Length = 2787

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 cacatcatccccttgatgca 404
           ||||||||||||||||||||
Sbjct: 858 cacatcatccccttgatgca 839
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>gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:20301
           IMAGE:4127153), complete cds
          Length = 2022

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 361 cttctccaggttttcatcagaaaa 338
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>emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (from clone DKFZp762N186)
          Length = 2024

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 364 cttctccaggttttcatcagaaaa 341
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>emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal brain of Homo sapiens
           (human)
          Length = 2004

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 393 cttctccaggttttcatcagaaaa 370
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>dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE1007688, weakly similar
           to LA PROTEIN HOMOLOG
          Length = 2061

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 404 cttctccaggttttcatcagaaaa 381
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>gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, complete sequence
          Length = 183890

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   cttctccaggttttcagcagaaaa 510
             |||||||||||||||| |||||||
Sbjct: 69564 cttctccaggttttcatcagaaaa 69541
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>gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:15884
           IMAGE:3529516), complete cds
          Length = 2018

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 357 cttctccaggttttcatcagaaaa 334
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>gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:12583
           IMAGE:2961587), complete cds
          Length = 2018

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 357 cttctccaggttttcatcagaaaa 334
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     acaagatgaagatacaggga 118
              ||||||||||||||||||||
Sbjct: 123845 acaagatgaagatacaggga 123864
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>gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, complete cds
          Length = 15549

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   tcttctgtgagcttcacctt 327
             ||||||||||||||||||||
Sbjct: 11337 tcttctgtgagcttcacctt 11356
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>gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome 13, complete
            sequence
          Length = 199707

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 309  cttctgtgagcttcacctttaagg 332
            |||||||||||||||| |||||||
Sbjct: 6929 cttctgtgagcttcacttttaagg 6952
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 557      actccccttccaccgaaaaaccca 580
                ||||||| ||||||||||||||||
Sbjct: 29425059 actccccctccaccgaaaaaccca 29425036
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>gb|AC009269.6|AC009269 Homo sapiens chromosome 15, clone RP11-138H8, complete sequence
          Length = 172850

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   cttctccaggttttcagcagaaaa 510
             |||||||||||||||| |||||||
Sbjct: 13177 cttctccaggttttcatcagaaaa 13154
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>gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144820

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   agatgaagatacagggagca 121
             ||||||||||||||||||||
Sbjct: 64196 agatgaagatacagggagca 64177
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>gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, complete sequence
          Length = 118172

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  tgatcttagttgtccctggt 376
            ||||||||||||||||||||
Sbjct: 7153 tgatcttagttgtccctggt 7134
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>gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   tgatcttagttgtccctggt 376
             ||||||||||||||||||||
Sbjct: 19005 tgatcttagttgtccctggt 19024
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>gb|AF443829.1| Homo sapiens acheron mRNA, complete cds
          Length = 2057

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 403 cttctccaggttttcatcagaaaa 380
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>gb|AF443828.1| Homo sapiens acheron mRNA, complete cds
          Length = 2057

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 403 cttctccaggttttcatcagaaaa 380
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>dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059
          Length = 1537

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 487 cttctccaggttttcagcagaaaa 510
           |||||||||||||||| |||||||
Sbjct: 304 cttctccaggttttcatcagaaaa 281
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 557   actccccttccaccgaaaaaccca 580
             ||||||| ||||||||||||||||
Sbjct: 87981 actccccctccaccgaaaaaccca 87958
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
             sequence
          Length = 157927

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    acaagatgaagatacaggga 118
             ||||||||||||||||||||
Sbjct: 80102 acaagatgaagatacaggga 80121
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>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    cttcttggccagttcttcca 464
              ||||||||||||||||||||
Sbjct: 104212 cttcttggccagttcttcca 104193
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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    tcttctgtgagcttcacctt 327
              ||||||||||||||||||||
Sbjct: 183078 tcttctgtgagcttcacctt 183097
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>gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complete sequence
          Length = 177652

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tcttctgtgagcttcacctt 327
              ||||||||||||||||||||
Sbjct: 149502 tcttctgtgagcttcacctt 149483
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>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
              sequence
          Length = 162143

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 309    cttctgtgagcttcacctttaagg 332
              |||||||||||||||| |||||||
Sbjct: 113971 cttctgtgagcttcacttttaagg 113994
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>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete
             sequence
          Length = 244653

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   cttggccagttcttccattt 467
             ||||||||||||||||||||
Sbjct: 11820 cttggccagttcttccattt 11801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,222,695
Number of Sequences: 3902068
Number of extensions: 6222695
Number of successful extensions: 137400
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137136
Number of HSP's gapped (non-prelim): 260
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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