ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC146111.3| Pan troglodytes BAC clone RP43-38O16 from 7, comp... 46 0.13
2gb|AC004990.1| Homo sapiens PAC clone RP5-1185I7 from 7, complet... 46 0.13
3gb|AC167229.4| Mus musculus BAC RP24-337D17 (Roswell Park Cance... 44 0.52
4gb|AC164627.4| Mus musculus 10 BAC RP23-382A18 (Roswell Park Can... 44 0.52
5emb|AL357513.8| Human DNA sequence from clone RP11-100A16 on chr... 42 2.0
6emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 42 2.0
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
8gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cance... 42 2.0
9gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14... 42 2.0
10dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
11gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Can... 42 2.0
12emb|AL731779.12| Mouse DNA sequence from clone RP23-48D8 on chro... 42 2.0
13gb|AC102749.10| Mus musculus chromosome 5, clone RP24-478I4, com... 40 8.1
14gb|AC102717.11| Mus musculus chromosome 5, clone RP24-576B5, com... 40 8.1
15ref|XM_637108.1| Dictyostelium discoideum hypothetical protein (... 40 8.1
16ref|XM_631485.1| Dictyostelium discoideum hook family protein (D... 40 8.1
17gb|BT018516.1| Zea mays clone EL01N0430F11.d mRNA sequence 40 8.1
18gb|U28943.2| Caenorhabditis elegans cosmid E04F6, complete sequence 40 8.1
19gb|AE017263.1| Mesoplasma florum L1 complete genome 40 8.1
20ref|XM_866943.1| PREDICTED: Bos taurus similar to Protein C21orf... 40 8.1
21ref|XM_718372.1| Candida albicans SC5314 putative MFS-MDR transp... 40 8.1
22ref|XM_718183.1| Candida albicans SC5314 putative MFS-MDR transp... 40 8.1
23gb|AC104868.8| Mus musculus chromosome 1, clone RP24-532K6, comp... 40 8.1
24gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete se... 40 8.1
25gb|AC124774.4| Mus musculus BAC clone RP23-49E5 from 15, complet... 40 8.1
26gb|AC116584.2| Mus musculus BAC clone RP23-353J13 from 15, compl... 40 8.1
27ref|XM_547622.2| PREDICTED: Canis familiaris similar to Desmogle... 40 8.1
28gb|U61958.1| Caenorhabditis elegans cosmid C25A8, complete sequence 40 8.1
29emb|AL138847.14| Human DNA sequence from clone RP5-849H19 on chr... 40 8.1
30emb|AL138801.20| Human DNA sequence from clone RP5-898J17 on chr... 40 8.1
31emb|AL022318.2|HS150C2 Human DNA sequence from clone CTA-150C2 o... 40 8.1
32gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 8.1
33emb|CR450726.6| Zebrafish DNA sequence from clone CH211-149F21 i... 40 8.1
34emb|BX548160.13| Zebrafish DNA sequence from clone DKEY-25G11 in... 40 8.1
35emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in... 40 8.1
36gb|AC011647.9| Homo sapiens chromosome 11, clone RP11-15D18, com... 40 8.1
37gb|AC015691.6| Homo sapiens chromosome , clone RP11-54F1, comple... 40 8.1
38gb|AC116156.3| Homo sapiens chromosome 11, clone RP11-44D14, com... 40 8.1
39gb|AC093258.2| Homo sapiens chromosome 5 clone RP11-1E3, complet... 40 8.1
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
41gb|AC009410.3| Homo sapiens BAC clone RP11-335M11 from 2, comple... 40 8.1
42gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Ca... 40 8.1
43gb|AC062021.7| Homo sapiens BAC clone RP11-171N8 from 2, complet... 40 8.1
44gb|AC124139.9| Mus musculus chromosome 1, clone RP24-78G8, compl... 40 8.1
45gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.1
46emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in... 40 8.1
47emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 40 8.1
48emb|CR931648.1| Streptococcus pneumoniae strain 980/68 (serotype... 40 8.1
49emb|CR931645.1| Streptococcus pneumoniae strain Wilder (serotype... 40 8.1
50gb|AF402095.1| Streptococcus pneumoniae serotype 9V capsular pol... 40 8.1
51gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 8.1
52gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
53emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb... 40 8.1
54emb|BX005189.9| Mouse DNA sequence from clone RP23-170L24 on chr... 40 8.1
55gb|AC130211.3| Mus musculus BAC clone RP24-261D2 from 1, complet... 40 8.1
56gb|AC134907.5| Mus musculus BAC clone RP23-362K17 from 8, comple... 40 8.1
57gb|AC131574.4| Homo sapiens chromosome 11, clone RP11-957H15, co... 40 8.1
58emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chro... 40 8.1
59emb|AL627205.12| Mouse DNA sequence from clone RP23-41E14 on chr... 40 8.1 
>gb|AC146111.3| Pan troglodytes BAC clone RP43-38O16 from 7, complete sequence
          Length = 158242

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 532   ccaaaacctttatatttcatcctttta 558
             ||||| |||||||||||||||||||||
Sbjct: 72245 ccaaagcctttatatttcatcctttta 72271
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>gb|AC004990.1| Homo sapiens PAC clone RP5-1185I7 from 7, complete sequence
          Length = 154405

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 532   ccaaaacctttatatttcatcctttta 558
             ||||| |||||||||||||||||||||
Sbjct: 68676 ccaaagcctttatatttcatcctttta 68650
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>gb|AC167229.4| Mus musculus  BAC RP24-337D17 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 197711

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                            
Query: 471    tatatgtaaaacaacaattgaaagaaaaag 500
              ||||||||||||||||||| ||||||||||
Sbjct: 154276 tatatgtaaaacaacaatt-aaagaaaaag 154248
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>gb|AC164627.4| Mus musculus 10 BAC RP23-382A18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 192275

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                            
Query: 471    tatatgtaaaacaacaattgaaagaaaaag 500
              ||||||||||||||||||| ||||||||||
Sbjct: 128987 tatatgtaaaacaacaatt-aaagaaaaag 129015
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>emb|AL357513.8| Human DNA sequence from clone RP11-100A16 on chromosome 6 Contains a
             cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1)
             pseudogene, complete sequence
          Length = 177645

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 516   cagaacagtttgctttccaaaacct 540
             ||||||| |||||||||||||||||
Sbjct: 63648 cagaacattttgctttccaaaacct 63624
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 151     ttgatcaatcacaaacaaggc 171
               |||||||||||||||||||||
Sbjct: 1153656 ttgatcaatcacaaacaaggc 1153636
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 148     caattgatcaatcacaaacaa 168
               |||||||||||||||||||||
Sbjct: 7943373 caattgatcaatcacaaacaa 7943353
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>gb|AC158624.4| Mus musculus  BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 174188

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 483   aacaattgaaagaaaaagcatcact 507
             ||||| |||||||||||||||||||
Sbjct: 76850 aacaaatgaaagaaaaagcatcact 76874
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>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 478   aaaacaacaattgaaagaaaa 498
             |||||||||||||||||||||
Sbjct: 48393 aaaacaacaattgaaagaaaa 48373
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   caattgatcaatcacaaacaa 168
             |||||||||||||||||||||
Sbjct: 50891 caattgatcaatcacaaacaa 50871
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>gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151710

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 483   aacaattgaaagaaaaagcatcact 507
             ||||| |||||||||||||||||||
Sbjct: 12552 aacaaatgaaagaaaaagcatcact 12576
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>emb|AL731779.12| Mouse DNA sequence from clone RP23-48D8 on chromosome 2, complete
              sequence
          Length = 168889

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 313    atatattcatgaaaaggtacaagag 337
              |||||||||| ||||||||||||||
Sbjct: 164078 atatattcataaaaaggtacaagag 164102
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>gb|AC102749.10| Mus musculus chromosome 5, clone RP24-478I4, complete sequence
          Length = 173437

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     gtcaataagtaaagcctgat 112
              ||||||||||||||||||||
Sbjct: 156973 gtcaataagtaaagcctgat 156992
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>gb|AC102717.11| Mus musculus chromosome 5, clone RP24-576B5, complete sequence
          Length = 161299

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     gtcaataagtaaagcctgat 112
              ||||||||||||||||||||
Sbjct: 146779 gtcaataagtaaagcctgat 146760
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>ref|XM_637108.1| Dictyostelium discoideum hypothetical protein (DDB0218071), partial
           mRNA
          Length = 2154

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 aacaacaattgaaagaaaaa 499
           ||||||||||||||||||||
Sbjct: 51  aacaacaattgaaagaaaaa 70
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>ref|XM_631485.1| Dictyostelium discoideum hook family protein (DDB0219928), partial
            mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 477  taaaacaacaattgaaagaaaaag 500
            ||||||||||||| ||||||||||
Sbjct: 1697 taaaacaacaattaaaagaaaaag 1720
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>gb|BT018516.1| Zea mays clone EL01N0430F11.d mRNA sequence
          Length = 1432

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 148 caattgatcaatcacaaacaaggc 171
           |||||||||||| |||||||||||
Sbjct: 617 caattgatcaattacaaacaaggc 640
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>gb|U28943.2| Caenorhabditis elegans cosmid E04F6, complete sequence
          Length = 39084

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 483   aacaattgaaagaaaaagca 502
             ||||||||||||||||||||
Sbjct: 25293 aacaattgaaagaaaaagca 25312
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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 304    aaacaaaatatatattcatgaaaa 327
              ||||| ||||||||||||||||||
Sbjct: 724223 aaacacaatatatattcatgaaaa 724200
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>ref|XM_866943.1| PREDICTED: Bos taurus similar to Protein C21orf51 homolog
           (LOC615202), mRNA
          Length = 468

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 554 ttttattctagcaaacaaaatact 577
           ||||||| ||||||||||||||||
Sbjct: 457 ttttattttagcaaacaaaatact 434
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>ref|XM_718372.1| Candida albicans SC5314 putative MFS-MDR transporter (CaO19_4779),
           mRNA
          Length = 1863

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 474 atgtaaaacaacaattgaaa 493
           ||||||||||||||||||||
Sbjct: 779 atgtaaaacaacaattgaaa 798
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>ref|XM_718183.1| Candida albicans SC5314 putative MFS-MDR transporter (CaO19_12243),
           mRNA
          Length = 1863

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 474 atgtaaaacaacaattgaaa 493
           ||||||||||||||||||||
Sbjct: 779 atgtaaaacaacaattgaaa 798
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>gb|AC104868.8| Mus musculus chromosome 1, clone RP24-532K6, complete sequence
          Length = 182376

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     ctaagcctgagtaaatcactacat 66
              |||||||| |||||||||||||||
Sbjct: 160916 ctaagcctcagtaaatcactacat 160893
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>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   aacaaaatatatattcatga 324
             ||||||||||||||||||||
Sbjct: 84953 aacaaaatatatattcatga 84934
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>gb|AC124774.4| Mus musculus BAC clone RP23-49E5 from 15, complete sequence
          Length = 227514

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    aaatactgtgaaatagcata 449
              ||||||||||||||||||||
Sbjct: 138068 aaatactgtgaaatagcata 138049
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>gb|AC116584.2| Mus musculus BAC clone RP23-353J13 from 15, complete sequence
          Length = 220203

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    aaatactgtgaaatagcata 449
              ||||||||||||||||||||
Sbjct: 184849 aaatactgtgaaatagcata 184868
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>ref|XM_547622.2| PREDICTED: Canis familiaris similar to Desmoglein-2 precursor (HDGC)
            (LOC490500), mRNA
          Length = 3324

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 492  aagaaaaagcatcactggcactgt 515
            |||||||| |||||||||||||||
Sbjct: 1389 aagaaaaaccatcactggcactgt 1412
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>gb|U61958.1| Caenorhabditis elegans cosmid C25A8, complete sequence
          Length = 15985

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   aaaacaacaattgaaagaaa 497
             ||||||||||||||||||||
Sbjct: 13850 aaaacaacaattgaaagaaa 13869
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>emb|AL138847.14| Human DNA sequence from clone RP5-849H19 on chromosome 1p32.1-33
             Contains part of the DOCK7 gene for dedicator of
             cytokinesis 7, a ribosomal protein L13a (RPL13A) and the
             ANGPTL3 gene for angiopoietin-like 3, complete sequence
          Length = 66673

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaaatatatattcatgaaaa 327
             ||||||||||||||||||||
Sbjct: 59050 aaaatatatattcatgaaaa 59031



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaaatatatattcatgaaaa 327
             ||||||||||||||||||||
Sbjct: 59014 aaaatatatattcatgaaaa 58995



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaaatatatattcatgaaaa 327
             ||||||||||||||||||||
Sbjct: 58996 aaaatatatattcatgaaaa 58977



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaaatatatattcatgaaaa 327
             ||||||||||||||||||||
Sbjct: 58980 aaaatatatattcatgaaaa 58961



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaaatatatattcatgaaaa 327
             ||||||||||||||||||||
Sbjct: 58964 aaaatatatattcatgaaaa 58945
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>emb|AL138801.20| Human DNA sequence from clone RP5-898J17 on chromosome 1 Contains part of
              a novel gene (FLJ31487), complete sequence
          Length = 146979

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aagtaaagcctgatcattca 118
              ||||||||||||||||||||
Sbjct: 102395 aagtaaagcctgatcattca 102414
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>emb|AL022318.2|HS150C2 Human DNA sequence from clone CTA-150C2 on chromosome 22q13.1-13.2,
              complete sequence
          Length = 201143

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    attcgtaaacaaaatatata 317
              ||||||||||||||||||||
Sbjct: 119602 attcgtaaacaaaatatata 119621
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 480     aacaacaattgaaagaaaaagcat 503
               ||||||||||||| ||||||||||
Sbjct: 4985519 aacaacaattgaatgaaaaagcat 4985542
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>emb|CR450726.6| Zebrafish DNA sequence from clone CH211-149F21 in linkage group 5,
             complete sequence
          Length = 93211

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   taaacaaaatatatattcat 322
             ||||||||||||||||||||
Sbjct: 74171 taaacaaaatatatattcat 74190
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>emb|BX548160.13| Zebrafish DNA sequence from clone DKEY-25G11 in linkage group 11,
              complete sequence
          Length = 237930

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 304    aaacaaaatatatattcatgaaaa 327
              ||||||||||| ||||||||||||
Sbjct: 116483 aaacaaaatatgtattcatgaaaa 116506
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>emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in linkage group 7,
              complete sequence
          Length = 163069

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 348    tacaatagtaatacctctgttttt 371
              ||||||| ||||||||||||||||
Sbjct: 141837 tacaatattaatacctctgttttt 141814
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>gb|AC011647.9| Homo sapiens chromosome 11, clone RP11-15D18, complete sequence
          Length = 143897

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ataatattagtgtttatttg 267
             ||||||||||||||||||||
Sbjct: 18797 ataatattagtgtttatttg 18816
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>gb|AC015691.6| Homo sapiens chromosome , clone RP11-54F1, complete sequence
          Length = 203036

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ataatattagtgtttatttg 267
             ||||||||||||||||||||
Sbjct: 74703 ataatattagtgtttatttg 74722
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>gb|AC116156.3| Homo sapiens chromosome 11, clone RP11-44D14, complete sequence
          Length = 176597

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   taaacaaaatatatattcat 322
             ||||||||||||||||||||
Sbjct: 30806 taaacaaaatatatattcat 30825
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>gb|AC093258.2| Homo sapiens chromosome 5 clone RP11-1E3, complete sequence
          Length = 151202

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     aataagtaaagcctgatcattcag 119
              ||||||||||||||||||| ||||
Sbjct: 116734 aataagtaaagcctgatcaatcag 116757
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 308      aaaatatatattcatgaaaa 327
                ||||||||||||||||||||
Sbjct: 24503015 aaaatatatattcatgaaaa 24502996
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>gb|AC009410.3| Homo sapiens BAC clone RP11-335M11 from 2, complete sequence
          Length = 189812

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   aaatacttgcatcactgatt 590
             ||||||||||||||||||||
Sbjct: 57343 aaatacttgcatcactgatt 57324
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>gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189456

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 259    gtttatttggatgaaatgacaatt 282
              ||||||||| ||||||||||||||
Sbjct: 150938 gtttatttgcatgaaatgacaatt 150961
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>gb|AC062021.7| Homo sapiens BAC clone RP11-171N8 from 2, complete sequence
          Length = 83306

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 471   tatatgtaaaacaacaattgaaag 494
             |||||||||||||||| |||||||
Sbjct: 48976 tatatgtaaaacaacagttgaaag 48953
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>gb|AC124139.9| Mus musculus chromosome 1, clone RP24-78G8, complete sequence
          Length = 216124

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   acaacaattgaaagaaaaag 500
             ||||||||||||||||||||
Sbjct: 37183 acaacaattgaaagaaaaag 37164
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     aaacaaaatatatattcatg 323
               ||||||||||||||||||||
Sbjct: 2601514 aaacaaaatatatattcatg 2601495
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>emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in linkage group 7,
             complete sequence
          Length = 190715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 348   tacaatagtaatacctctgttttt 371
             ||||||| ||||||||||||||||
Sbjct: 44289 tacaatattaatacctctgttttt 44312
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>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 529    tttccaaaacctttatattt 548
              ||||||||||||||||||||
Sbjct: 752375 tttccaaaacctttatattt 752356
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>emb|CR931648.1| Streptococcus pneumoniae strain 980/68 (serotype 9v)
          Length = 20856

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   tgtaaaacaacaattgaaag 494
             ||||||||||||||||||||
Sbjct: 10061 tgtaaaacaacaattgaaag 10080
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>emb|CR931645.1| Streptococcus pneumoniae strain Wilder (serotype 9a)
          Length = 20538

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 475  tgtaaaacaacaattgaaag 494
            ||||||||||||||||||||
Sbjct: 9744 tgtaaaacaacaattgaaag 9763
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>gb|AF402095.1| Streptococcus pneumoniae serotype 9V capsular polysaccharide
            synthesis gene locus, complete sequence
          Length = 19669

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 475  tgtaaaacaacaattgaaag 494
            ||||||||||||||||||||
Sbjct: 8778 tgtaaaacaacaattgaaag 8797
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 545     atttcatccttttattctagcaaa 568
               |||||||||||||| |||||||||
Sbjct: 1294727 atttcatccttttaatctagcaaa 1294704
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 308      aaaatatatattcatgaaaa 327
                ||||||||||||||||||||
Sbjct: 24431221 aaaatatatattcatgaaaa 24431202
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>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120071

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaaatatatattcatgaaaa 327
             ||||||||||||||||||||
Sbjct: 74046 aaaatatatattcatgaaaa 74027
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>emb|BX005189.9| Mouse DNA sequence from clone RP23-170L24 on chromosome X, complete
             sequence
          Length = 206372

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   acaatacaatagtaatacct 363
             ||||||||||||||||||||
Sbjct: 89920 acaatacaatagtaatacct 89939
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>gb|AC130211.3| Mus musculus BAC clone RP24-261D2 from 1, complete sequence
          Length = 182051

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   acaacaattgaaagaaaaag 500
             ||||||||||||||||||||
Sbjct: 15752 acaacaattgaaagaaaaag 15771
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>gb|AC134907.5| Mus musculus BAC clone RP23-362K17 from 8, complete sequence
          Length = 186341

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 541    ttatatttcatccttttattctag 564
              |||||||||||| |||||||||||
Sbjct: 150010 ttatatttcatcattttattctag 150033
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>gb|AC131574.4| Homo sapiens chromosome 11, clone RP11-957H15, complete sequence
          Length = 166214

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   taaacaaaatatatattcat 322
             ||||||||||||||||||||
Sbjct: 45916 taaacaaaatatatattcat 45935
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>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete
             sequence
          Length = 201642

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   atcactggcactgtcagaac 521
             ||||||||||||||||||||
Sbjct: 45244 atcactggcactgtcagaac 45263
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>emb|AL627205.12| Mouse DNA sequence from clone RP23-41E14 on chromosome 11, complete
              sequence
          Length = 223794

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 556    ttattctagcaaacaaaata 575
              ||||||||||||||||||||
Sbjct: 112768 ttattctagcaaacaaaata 112749


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,076,700
Number of Sequences: 3902068
Number of extensions: 7076700
Number of successful extensions: 144976
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 144506
Number of HSP's gapped (non-prelim): 472
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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