ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466003.1| Oryza sativa (japonica cultivar-group), mRNA 137 3e-29
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
3dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
4dbj|AK120851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
5emb|AL390815.5|CNS06C7U Human chromosome 14 DNA sequence BAC R-1... 46 0.081
6gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosom... 42 1.3
7emb|Z73974.1|CEF29F11 Caenorhabditis elegans Cosmid F29F11, comp... 42 1.3
8gb|AC122009.2| Mus musculus BAC clone RP24-347B22 from 3, comple... 42 1.3
9ref|XM_762794.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.3
10gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, c... 40 5.0
11ref|XM_001000202.1| PREDICTED: Mus musculus UDP-N-acetyl-alpha-D... 40 5.0
12gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, co... 40 5.0
13gb|AC132580.2| Mus musculus BAC clone RP24-388H18 from chromosom... 40 5.0
14emb|AL355146.13| Human DNA sequence from clone RP11-311O1 on chr... 40 5.0
15emb|AL162595.17| Human DNA sequence from clone RP5-1061H20 on ch... 40 5.0
16gb|AC166078.2| Mus musculus BAC clone RP23-13G1 from chromosome ... 40 5.0
17emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 5.0
18emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; se... 40 5.0
19dbj|AK155008.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.0
20dbj|AK159721.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 5.0
21dbj|AK028506.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 5.0
22gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosom... 40 5.0
23gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, com... 40 5.0
24ref|NM_172451.1| Mus musculus UDP-N-acetyl-alpha-D-galactosamine... 40 5.0
25emb|AL591125.20| Mouse DNA sequence from clone RP23-438D7 on chr... 40 5.0
26emb|AL928939.6| Mouse DNA sequence from clone RP23-294B13 on chr... 40 5.0

>ref|XM_466003.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2626

 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Minus

                                                                        
Query: 269  tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 2006 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 1947

                                 
Query: 329  tcagcaagaagtgactgaact 349
            |||||||||||||||||||||
Sbjct: 1946 tcagcaagaagtgactgaact 1926



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                            
Query: 269      tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328
                |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 19014031 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 19014090

                                     
Query: 329      tcagcaagaagtgactgaact 349
                |||||||||||||||||||||
Sbjct: 19014091 tcagcaagaagtgactgaact 19014111



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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0047A17
          Length = 149142

 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                         
Query: 269   tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328
             |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 19552 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 19611

                                  
Query: 329   tcagcaagaagtgactgaact 349
             |||||||||||||||||||||
Sbjct: 19612 tcagcaagaagtgactgaact 19632



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>dbj|AK120851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M23, full
            insert sequence
          Length = 2625

 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Minus

                                                                        
Query: 269  tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 2006 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 1947

                                 
Query: 329  tcagcaagaagtgactgaact 349
            |||||||||||||||||||||
Sbjct: 1946 tcagcaagaagtgactgaact 1926



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>emb|AL390815.5|CNS06C7U Human chromosome 14 DNA sequence BAC R-129M6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155350

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 283    ttgaatttctcttgttctcatgtaagt 309
              ||||||||||| |||||||||||||||
Sbjct: 132714 ttgaatttctcctgttctcatgtaagt 132740



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>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete
            sequence
          Length = 205029

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  gatcgatctctttcgtcttca 123
            |||||||||||||||||||||
Sbjct: 7773 gatcgatctctttcgtcttca 7793



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>emb|Z73974.1|CEF29F11 Caenorhabditis elegans Cosmid F29F11, complete sequence
          Length = 36258

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  gcttaaaatttgcacaatgat 186
            |||||||||||||||||||||
Sbjct: 7248 gcttaaaatttgcacaatgat 7268



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>gb|AC122009.2| Mus musculus BAC clone RP24-347B22 from 3, complete sequence
          Length = 152054

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   gatcgatctctttcgtcttca 123
             |||||||||||||||||||||
Sbjct: 33963 gatcgatctctttcgtcttca 33943



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>ref|XM_762794.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_260_19970_25471)
            partial mRNA
          Length = 5502

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 53   agcatggagaatatgccattg 73
            |||||||||||||||||||||
Sbjct: 1867 agcatggagaatatgccattg 1887



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>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence
          Length = 191054

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    aaacagcatggagaatatgc 68
             ||||||||||||||||||||
Sbjct: 26874 aaacagcatggagaatatgc 26855



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>ref|XM_001000202.1| PREDICTED: Mus musculus
            UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase 6 (Galnt6), mRNA
          Length = 3814

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   aaacagcatggagaatatgc 68
            ||||||||||||||||||||
Sbjct: 3264 aaacagcatggagaatatgc 3283



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>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence
          Length = 228513

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   taactaattgcttgaatttctctt 295
             |||||||||||||||||| |||||
Sbjct: 78462 taactaattgcttgaattgctctt 78439



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>gb|AC132580.2| Mus musculus BAC clone RP24-388H18 from chromosome 9, complete sequence
          Length = 127200

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   cttgaatttctcttgttctcatgt 305
             ||||||||||||||||| ||||||
Sbjct: 39850 cttgaatttctcttgttttcatgt 39873



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>emb|AL355146.13| Human DNA sequence from clone RP11-311O1 on chromosome 6, complete
             sequence
          Length = 57447

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   tgaattactaaattatagta 211
             ||||||||||||||||||||
Sbjct: 26478 tgaattactaaattatagta 26459



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>emb|AL162595.17| Human DNA sequence from clone RP5-1061H20 on chromosome 1 Contains
             three novel genes, a novel pseudogene, the 5' end of the
             RAB4A gene for RAB4A, member RAS oncogene family and a CpG
             island, complete sequence
          Length = 115018

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttctcttgttctcatgtaag 308
             ||||||||||||||||||||
Sbjct: 22682 ttctcttgttctcatgtaag 22663



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>gb|AC166078.2| Mus musculus BAC clone RP23-13G1 from chromosome 9, complete sequence
          Length = 225128

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    cttgaatttctcttgttctcatgt 305
              ||||||||||||||||| ||||||
Sbjct: 158160 cttgaatttctcttgttttcatgt 158183



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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 164     aggcttaaaatttgcacaat 183
               ||||||||||||||||||||
Sbjct: 2563680 aggcttaaaatttgcacaat 2563661



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>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5
          Length = 348986

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tacaaattatatttgatcca 24
             ||||||||||||||||||||
Sbjct: 93442 tacaaattatatttgatcca 93423



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>dbj|AK155008.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630115L03
            product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase 6, full insert sequence
          Length = 3801

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   aaacagcatggagaatatgc 68
            ||||||||||||||||||||
Sbjct: 3260 aaacagcatggagaatatgc 3279



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>dbj|AK159721.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420028P04
            product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase 6, full insert sequence
          Length = 3776

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   aaacagcatggagaatatgc 68
            ||||||||||||||||||||
Sbjct: 3235 aaacagcatggagaatatgc 3254



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>dbj|AK028506.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632410F13
            product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase 6, full insert sequence
          Length = 3796

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   aaacagcatggagaatatgc 68
            ||||||||||||||||||||
Sbjct: 3253 aaacagcatggagaatatgc 3272



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>gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosome 17, complete
             sequence
          Length = 140053

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gtattacaaattatatttga 20
             ||||||||||||||||||||
Sbjct: 41345 gtattacaaattatatttga 41364



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>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence
          Length = 200503

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     aaacagcatggagaatatgc 68
              ||||||||||||||||||||
Sbjct: 151047 aaacagcatggagaatatgc 151028



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>ref|NM_172451.1| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase 6 (Galnt6), mRNA
          Length = 3796

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   aaacagcatggagaatatgc 68
            ||||||||||||||||||||
Sbjct: 3253 aaacagcatggagaatatgc 3272



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>emb|AL591125.20| Mouse DNA sequence from clone RP23-438D7 on chromosome 11, complete
              sequence
          Length = 160284

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     ataagcagcaaacagcatgg 59
              ||||||||||||||||||||
Sbjct: 116199 ataagcagcaaacagcatgg 116218



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>emb|AL928939.6| Mouse DNA sequence from clone RP23-294B13 on chromosome 2, complete
              sequence
          Length = 191291

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    cagcaagaagtgactgaact 349
              ||||||||||||||||||||
Sbjct: 183836 cagcaagaagtgactgaact 183817


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,030,692
Number of Sequences: 3902068
Number of extensions: 4030692
Number of successful extensions: 73571
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73492
Number of HSP's gapped (non-prelim): 79
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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