| Clone Name | rbags12m03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2626 Score = 137 bits (69), Expect = 3e-29 Identities = 78/81 (96%) Strand = Plus / Minus Query: 269 tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 2006 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 1947 Query: 329 tcagcaagaagtgactgaact 349 ||||||||||||||||||||| Sbjct: 1946 tcagcaagaagtgactgaact 1926
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 137 bits (69), Expect = 3e-29 Identities = 78/81 (96%) Strand = Plus / Plus Query: 269 tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 19014031 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 19014090 Query: 329 tcagcaagaagtgactgaact 349 ||||||||||||||||||||| Sbjct: 19014091 tcagcaagaagtgactgaact 19014111
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 137 bits (69), Expect = 3e-29 Identities = 78/81 (96%) Strand = Plus / Plus Query: 269 tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 19552 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 19611 Query: 329 tcagcaagaagtgactgaact 349 ||||||||||||||||||||| Sbjct: 19612 tcagcaagaagtgactgaact 19632
>dbj|AK120851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M23, full insert sequence Length = 2625 Score = 137 bits (69), Expect = 3e-29 Identities = 78/81 (96%) Strand = Plus / Minus Query: 269 tattaactaattgcttgaatttctcttgttctcatgtaagtcatgaactgccccggtatt 328 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 2006 tattaactgattgcttgaatttctcttgttctcatgtaggtcatgaactgccctggtatt 1947 Query: 329 tcagcaagaagtgactgaact 349 ||||||||||||||||||||| Sbjct: 1946 tcagcaagaagtgactgaact 1926
>emb|AL390815.5|CNS06C7U Human chromosome 14 DNA sequence BAC R-129M6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155350 Score = 46.1 bits (23), Expect = 0.081 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ttgaatttctcttgttctcatgtaagt 309 ||||||||||| ||||||||||||||| Sbjct: 132714 ttgaatttctcctgttctcatgtaagt 132740
>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence Length = 205029 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gatcgatctctttcgtcttca 123 ||||||||||||||||||||| Sbjct: 7773 gatcgatctctttcgtcttca 7793
>emb|Z73974.1|CEF29F11 Caenorhabditis elegans Cosmid F29F11, complete sequence Length = 36258 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 gcttaaaatttgcacaatgat 186 ||||||||||||||||||||| Sbjct: 7248 gcttaaaatttgcacaatgat 7268
>gb|AC122009.2| Mus musculus BAC clone RP24-347B22 from 3, complete sequence Length = 152054 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 gatcgatctctttcgtcttca 123 ||||||||||||||||||||| Sbjct: 33963 gatcgatctctttcgtcttca 33943
>ref|XM_762794.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_260_19970_25471) partial mRNA Length = 5502 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 agcatggagaatatgccattg 73 ||||||||||||||||||||| Sbjct: 1867 agcatggagaatatgccattg 1887
>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence Length = 191054 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 26874 aaacagcatggagaatatgc 26855
>ref|XM_001000202.1| PREDICTED: Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (Galnt6), mRNA Length = 3814 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 3264 aaacagcatggagaatatgc 3283
>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence Length = 228513 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 taactaattgcttgaatttctctt 295 |||||||||||||||||| ||||| Sbjct: 78462 taactaattgcttgaattgctctt 78439
>gb|AC132580.2| Mus musculus BAC clone RP24-388H18 from chromosome 9, complete sequence Length = 127200 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 cttgaatttctcttgttctcatgt 305 ||||||||||||||||| |||||| Sbjct: 39850 cttgaatttctcttgttttcatgt 39873
>emb|AL355146.13| Human DNA sequence from clone RP11-311O1 on chromosome 6, complete sequence Length = 57447 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 tgaattactaaattatagta 211 |||||||||||||||||||| Sbjct: 26478 tgaattactaaattatagta 26459
>emb|AL162595.17| Human DNA sequence from clone RP5-1061H20 on chromosome 1 Contains three novel genes, a novel pseudogene, the 5' end of the RAB4A gene for RAB4A, member RAS oncogene family and a CpG island, complete sequence Length = 115018 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ttctcttgttctcatgtaag 308 |||||||||||||||||||| Sbjct: 22682 ttctcttgttctcatgtaag 22663
>gb|AC166078.2| Mus musculus BAC clone RP23-13G1 from chromosome 9, complete sequence Length = 225128 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 cttgaatttctcttgttctcatgt 305 ||||||||||||||||| |||||| Sbjct: 158160 cttgaatttctcttgttttcatgt 158183
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aggcttaaaatttgcacaat 183 |||||||||||||||||||| Sbjct: 2563680 aggcttaaaatttgcacaat 2563661
>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5 Length = 348986 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tacaaattatatttgatcca 24 |||||||||||||||||||| Sbjct: 93442 tacaaattatatttgatcca 93423
>dbj|AK155008.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630115L03 product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6, full insert sequence Length = 3801 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 3260 aaacagcatggagaatatgc 3279
>dbj|AK159721.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420028P04 product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6, full insert sequence Length = 3776 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 3235 aaacagcatggagaatatgc 3254
>dbj|AK028506.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632410F13 product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6, full insert sequence Length = 3796 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 3253 aaacagcatggagaatatgc 3272
>gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosome 17, complete sequence Length = 140053 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gtattacaaattatatttga 20 |||||||||||||||||||| Sbjct: 41345 gtattacaaattatatttga 41364
>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence Length = 200503 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 151047 aaacagcatggagaatatgc 151028
>ref|NM_172451.1| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (Galnt6), mRNA Length = 3796 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacagcatggagaatatgc 68 |||||||||||||||||||| Sbjct: 3253 aaacagcatggagaatatgc 3272
>emb|AL591125.20| Mouse DNA sequence from clone RP23-438D7 on chromosome 11, complete sequence Length = 160284 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ataagcagcaaacagcatgg 59 |||||||||||||||||||| Sbjct: 116199 ataagcagcaaacagcatgg 116218
>emb|AL928939.6| Mouse DNA sequence from clone RP23-294B13 on chromosome 2, complete sequence Length = 191291 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cagcaagaagtgactgaact 349 |||||||||||||||||||| Sbjct: 183836 cagcaagaagtgactgaact 183817 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,030,692 Number of Sequences: 3902068 Number of extensions: 4030692 Number of successful extensions: 73571 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73492 Number of HSP's gapped (non-prelim): 79 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)