ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC084677.1|CBRG47L22 Caenorhabditis briggsae cosmid G47L22, c... 44 0.34
2emb|AL354661.14| Human DNA sequence from clone RP11-386D8 on chr... 42 1.4
3gb|AC092593.2| Homo sapiens BAC clone RP11-68D16 from 4, complet... 42 1.4
4gb|AC108425.9| Mus musculus chromosome 1, clone RP23-119I1, comp... 40 5.4
5ref|XM_629255.1| Dictyostelium discoideum hypothetical protein (... 40 5.4
6gb|AC124440.3| Mus musculus BAC clone RP24-176E5 from chromosome... 40 5.4
7emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 5.4
8emb|AL133284.13| Human DNA sequence from clone RP11-67K19 on chr... 40 5.4
9gb|AC158578.5| Mus musculus chromosome 1, clone RP24-370C23, com... 40 5.4
10gb|AC007669.6|AC007669 Drosophila melanogaster, chromosome 3R, r... 40 5.4
11gb|AC020973.3|AC020973 Mus musculus chromosome 18 clone RPCI-23_... 40 5.4
12gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P1... 40 5.4
13gb|AE003702.3| Drosophila melanogaster chromosome 3R, section 40... 40 5.4
14emb|CR848047.6| Zebrafish DNA sequence from clone DKEY-235H8 in ... 40 5.4

>gb|AC084677.1|CBRG47L22 Caenorhabditis briggsae cosmid G47L22, complete sequence
          Length = 43559

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 265   accatctggacaacccggacat 286
             ||||||||||||||||||||||
Sbjct: 24273 accatctggacaacccggacat 24252



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 265   accatctggacaacccggacat 286
             ||||||||||||||||||||||
Sbjct: 20072 accatctggacaacccggacat 20051



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>emb|AL354661.14| Human DNA sequence from clone RP11-386D8 on chromosome 9 Contains the
              gene for a novel olfactory (seven transmembrane helix)
              receptor and the 3' end of the gene for a novel protein
              (including KIAA0368), complete sequence
          Length = 138069

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    caagaagacagaaaacaacag 145
              |||||||||||||||||||||
Sbjct: 115615 caagaagacagaaaacaacag 115635



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>gb|AC092593.2| Homo sapiens BAC clone RP11-68D16 from 4, complete sequence
          Length = 128255

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    aggattttaccttccttttta 52
             |||||||||||||||||||||
Sbjct: 36656 aggattttaccttccttttta 36676



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>gb|AC108425.9| Mus musculus chromosome 1, clone RP23-119I1, complete sequence
          Length = 187230

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    tacaagaagacagaaaacaa 142
              ||||||||||||||||||||
Sbjct: 140986 tacaagaagacagaaaacaa 140967



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>ref|XM_629255.1| Dictyostelium discoideum hypothetical protein (DDB0219833), partial
            mRNA
          Length = 2118

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  ttcacattttatagttttat 169
            ||||||||||||||||||||
Sbjct: 1128 ttcacattttatagttttat 1109



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>gb|AC124440.3| Mus musculus BAC clone RP24-176E5 from chromosome 3, complete sequence
          Length = 173198

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   attgctacaagaagacagaa 137
             ||||||||||||||||||||
Sbjct: 83783 attgctacaagaagacagaa 83802



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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    attttaccttcctttttatg 54
             ||||||||||||||||||||
Sbjct: 87681 attttaccttcctttttatg 87662



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>emb|AL133284.13| Human DNA sequence from clone RP11-67K19 on chromosome 9q33.1-34.11
             Contains part of the ASTN2 gene for astrotactin 2
             (KIAA0634), the TRIM32 gene for tripartite
             motif-containing 32, and a novel gene, complete sequence
          Length = 155466

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   atattgctacaagaagacagaaaa 139
             |||||| |||||||||||||||||
Sbjct: 44585 atattgatacaagaagacagaaaa 44608



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>gb|AC158578.5| Mus musculus chromosome 1, clone RP24-370C23, complete sequence
          Length = 165463

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tacaagaagacagaaaacaa 142
              ||||||||||||||||||||
Sbjct: 128741 tacaagaagacagaaaacaa 128760



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>gb|AC007669.6|AC007669 Drosophila melanogaster, chromosome 3R, region 88A-88A, BAC clone
             BACR25B05, complete sequence
          Length = 181794

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   acattttatagttttataca 172
             ||||||||||||||||||||
Sbjct: 93588 acattttatagttttataca 93569



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>gb|AC020973.3|AC020973 Mus musculus chromosome 18 clone RPCI-23_72C14, complete sequence
          Length = 213062

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    attttaccttcctttttatg 54
             ||||||||||||||||||||
Sbjct: 75641 attttaccttcctttttatg 75660



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>gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P18, complete sequence
          Length = 218100

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    attttaccttcctttttatg 54
             ||||||||||||||||||||
Sbjct: 30984 attttaccttcctttttatg 30965



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>gb|AE003702.3| Drosophila melanogaster chromosome 3R, section 40 of 118 of the complete
              sequence
          Length = 227413

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    acattttatagttttataca 172
              ||||||||||||||||||||
Sbjct: 114035 acattttatagttttataca 114016



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>emb|CR848047.6| Zebrafish DNA sequence from clone DKEY-235H8 in linkage group 16,
             complete sequence
          Length = 166830

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   ttcacattttatagttttat 169
             ||||||||||||||||||||
Sbjct: 55362 ttcacattttatagttttat 55343


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,668,372
Number of Sequences: 3902068
Number of extensions: 3668372
Number of successful extensions: 86532
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86508
Number of HSP's gapped (non-prelim): 24
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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