| Clone Name | rbags12l20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099M05, full insert sequence Length = 3645 Score = 260 bits (131), Expect = 5e-66 Identities = 311/371 (83%) Strand = Plus / Minus Query: 233 gggctgttgccattttgcttcgaagtcctccaagtactctctgctgttgagctctgtcaa 292 ||||||| || |||| ||||| |||||||||||||||||||| ||||||| ||||||||| Sbjct: 3317 gggctgtcgcaatttcgcttcaaagtcctccaagtactctctactgttgatctctgtcaa 3258 Query: 293 cctgctaatcgtacgatctttggcgaatcctagctcattgtccacacagagatcaggatc 352 ||| ||||| || ||||| ||||| ||||||||||||||||||||||| | |||||||| Sbjct: 3257 cctactaattgttcgatccttggcaaatcctagctcattgtccacacacaagtcaggatc 3198 Query: 353 atcacttttccgcgagcgtgaagatctaggtgaacttttttgtgcttcagcgaccgtcac 412 |||| ||||| |||| |||||||||||||| ||| ||||| |||||||||| || ||||| Sbjct: 3197 atcagttttctgcgaccgtgaagatctaggagaaatttttcgtgcttcagcaactgtcac 3138 Query: 413 gacgttctcgaatagctctatcggctcggcctcggctgtgcataatagcctccccttgtt 472 | ||||| ||||| ||||| || | || || ||||| ||||||| ||| | ||||| Sbjct: 3137 tatattctcaaatagttctattggtgcagcgtctgctgtacataataaccttgctttgtt 3078 Query: 473 ctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttctgttatgatatcc 532 ||| ||||| ||||||||||| |||||||||||||| ||||| |||| ||| ||| | || Sbjct: 3077 ctcgtacataacatcaaccaatgtgacaaaccgataagctgctgttcggttctgagaccc 3018 Query: 533 aaacttagggacaccttcaactgcaagggtgtgaaacttcttaaatagcccaaaatagtc 592 ||||||||| | || |||| ||| | |||||||||||| || || ||||||||||| || Sbjct: 3017 aaacttaggaatgccatcaagtgccaaggtgtgaaactttttgaacagcccaaaataatc 2958 Query: 593 cgctgcgccta 603 ||||| |||| Sbjct: 2957 agctgcaccta 2947
>gb|AY105447.1| Zea mays PCO139673 mRNA sequence Length = 1259 Score = 192 bits (97), Expect = 9e-46 Identities = 289/353 (81%) Strand = Plus / Minus Query: 251 ttcgaagtcctccaagtactctctgctgttgagctctgtcaacctgctaatcgtacgatc 310 ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1087 ttcgaagtcctccaaatattctctgctgttgatctctgtcaacctgctaatcgtacgatc 1028 Query: 311 tttggcgaatcctagctcattgtccacacagagatcaggatcatcacttttccgcgagcg 370 ||||| ||||| |||||||||||||| || || |||| || || |||||| | ||||| Sbjct: 1027 cttggcaaatccaagctcattgtccacgcataggtcagtgtcgtcgcttttctgtgagcg 968 Query: 371 tgaagatctaggtgaacttttttgtgcttcagcgaccgtcacgacgttctcgaatagctc 430 ||||||||| |||||| || |||||||||| || ||||||| |||||||| || | Sbjct: 967 tgaagatcttggtgaaaccttccgtgcttcagcaacagtcacgatattctcgaacagtcc 908 Query: 431 tatcggctcggcctcggctgtgcataatagcctccccttgttctcatacattacatcaac 490 || || | ||||||||||| ||||| ||||| |||||||||| ||||| ||||||| Sbjct: 907 tactggtccagcctcggctgtacataacagccttgccttgttctcgtacataacatcaat 848 Query: 491 caacgtgacaaaccgatacgctgcagttctgttatgatatccaaacttagggacaccttc 550 || ||||| |||||||| ||||| ||||||||| | | |||| ||| || | ||| || Sbjct: 847 cagtgtgacgaaccgataagctgctgttctgttactagacccaagctttggaataccatc 788 Query: 551 aactgcaagggtgtgaaacttcttaaatagcccaaaatagtccgctgcgccta 603 || ||| ||||||||||| || ||||| || ||||| || || ||||| |||| Sbjct: 787 aagtgccagggtgtgaaattttttaaagagtccaaagtaatctgctgcaccta 735
>gb|AY111372.1| Zea mays CL11075_2 mRNA sequence Length = 722 Score = 147 bits (74), Expect = 5e-32 Identities = 224/273 (82%), Gaps = 2/273 (0%) Strand = Plus / Plus Query: 251 ttcgaagtcctccaagtactctctgctgttg--agctctgtcaacctgctaatcgtacga 308 ||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||| Sbjct: 416 ttcgaagtcctccaaatattctctgctgttggaatctctgtcaacctgctaatcgtacga 475 Query: 309 tctttggcgaatcctagctcattgtccacacagagatcaggatcatcacttttccgcgag 368 || ||||| ||||| ||||||||||||||||| || ||||| || ||||||||| | ||| Sbjct: 476 tccttggcaaatccaagctcattgtccacacataggtcagggtcgtcacttttctgtgag 535 Query: 369 cgtgaagatctaggtgaacttttttgtgcttcagcgaccgtcacgacgttctcgaatagc 428 || |||||||| |||||| || || |||||||| | |||| || ||||| || || Sbjct: 536 cgcgaagatcttggtgaaaccttctgggcttcagcaagagtcatgatattctcaaacagt 595 Query: 429 tctatcggctcggcctcggctgtgcataatagcctccccttgttctcatacattacatca 488 |||| || | ||||||||||| ||||| ||||| | ||| |||| ||||| |||||| Sbjct: 596 tctactggtccagcctcggctgtacataacagccttgctttggtctcgtacataacatca 655 Query: 489 accaacgtgacaaaccgatacgctgcagttctg 521 | || ||||| |||||||| ||||| |||||| Sbjct: 656 atcagtgtgacgaaccgataagctgctgttctg 688
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 292 acctgctaatcgtacgatctttggcgaatcctagctcattgtccacacagagatcaggat 351 |||| ||||| || ||||| ||||| ||||||||||||||||||||||| | ||||||| Sbjct: 10097143 acctactaattgttcgatccttggcaaatcctagctcattgtccacacacaagtcaggat 10097084 Query: 352 catcacttttccgcgagcgtgaagatctaggtgaacttttttgtgcttcagcgaccgtca 411 ||||| ||||| |||| |||||||||||||| ||| ||||| |||||||||| || |||| Sbjct: 10097083 catcagttttctgcgaccgtgaagatctaggagaaatttttcgtgcttcagcaactgtca 10097024 Query: 412 cgacgttctcgaatagctctat 433 | | ||||| ||||| ||||| Sbjct: 10097023 ctatattctcaaatagttctat 10097002 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 233 gggctgttgccattttgcttcgaagtcctccaagtactctctgctgttgagctctgtcaa 292 ||||||| || |||| ||||| |||||||||||||||||||| ||||||| ||||||||| Sbjct: 10097284 gggctgtcgcaatttcgcttcaaagtcctccaagtactctctactgttgatctctgtcaa 10097225 Query: 293 cctgc 297 ||||| Sbjct: 10097224 cctgc 10097220 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 481 ttacatcaaccaacgtgacaaaccgatacgctgcagttctgttatgatatccaaacttag 540 ||||||||||||| |||||||||||||| ||||| |||| ||| ||| | |||||||||| Sbjct: 10096325 ttacatcaaccaatgtgacaaaccgataagctgctgttcggttctgagacccaaacttag 10096266 Query: 541 ggacaccttcaactgcaagggtgtgaaactt 571 | | || |||| ||| | |||||||||||| Sbjct: 10096265 gaatgccatcaagtgccaaggtgtgaaactt 10096235
>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0023I13 Length = 165911 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 292 acctgctaatcgtacgatctttggcgaatcctagctcattgtccacacagagatcaggat 351 |||| ||||| || ||||| ||||| ||||||||||||||||||||||| | ||||||| Sbjct: 56489 acctactaattgttcgatccttggcaaatcctagctcattgtccacacacaagtcaggat 56430 Query: 352 catcacttttccgcgagcgtgaagatctaggtgaacttttttgtgcttcagcgaccgtca 411 ||||| ||||| |||| |||||||||||||| ||| ||||| |||||||||| || |||| Sbjct: 56429 catcagttttctgcgaccgtgaagatctaggagaaatttttcgtgcttcagcaactgtca 56370 Query: 412 cgacgttctcgaatagctctat 433 | | ||||| ||||| ||||| Sbjct: 56369 ctatattctcaaatagttctat 56348 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 233 gggctgttgccattttgcttcgaagtcctccaagtactctctgctgttgagctctgtcaa 292 ||||||| || |||| ||||| |||||||||||||||||||| ||||||| ||||||||| Sbjct: 56630 gggctgtcgcaatttcgcttcaaagtcctccaagtactctctactgttgatctctgtcaa 56571 Query: 293 cctgc 297 ||||| Sbjct: 56570 cctgc 56566 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 481 ttacatcaaccaacgtgacaaaccgatacgctgcagttctgttatgatatccaaacttag 540 ||||||||||||| |||||||||||||| ||||| |||| ||| ||| | |||||||||| Sbjct: 55671 ttacatcaaccaatgtgacaaaccgataagctgctgttcggttctgagacccaaacttag 55612 Query: 541 ggacaccttcaactgcaagggtgtgaaactt 571 | | || |||| ||| | |||||||||||| Sbjct: 55611 gaatgccatcaagtgccaaggtgtgaaactt 55581
>emb|BX828881.1|CNS0A2QV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZD11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1628 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 467 cttgttctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttct 520 |||||||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1312 cttgttctcatacattacatcaaccagtgtgacaaagcggtaagctgcagttct 1259
>gb|BT020434.1| Arabidopsis thaliana At4g28070 mRNA, complete cds Length = 1422 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 466 ccttgttctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttctgttat 525 ||||||||||||||||||||||||||| || ||||| || || |||||||| || |||| Sbjct: 1171 ccttgttctcatacattacatcaaccagtgtcacaaagcggtaagctgcagtcctattat 1112 Query: 526 g 526 | Sbjct: 1111 g 1111 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Minus Query: 264 aagtactctctgctgttgagctctgtcaacctgctaatcgtacgatctttggcgaatcct 323 ||||| ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct: 1376 aagtattctttgctgttcatctccgttaatctgctaatggtgcggtctttagcaaaacca 1317 Query: 324 agctcattgtccacacagagatcaggatcatcacttttcc 363 ||||| |||||||| || || || ||||||||||| |||| Sbjct: 1316 agctcgttgtccacgcaaaggtcgggatcatcactcttcc 1277
>ref|NM_001036660.1| Arabidopsis thaliana ATPase AT4G28070 transcript variant AT4G28070.2 mRNA, complete cds Length = 1422 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 466 ccttgttctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttctgttat 525 ||||||||||||||||||||||||||| || ||||| || || |||||||| || |||| Sbjct: 1171 ccttgttctcatacattacatcaaccagtgtcacaaagcggtaagctgcagtcctattat 1112 Query: 526 g 526 | Sbjct: 1111 g 1111 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Minus Query: 264 aagtactctctgctgttgagctctgtcaacctgctaatcgtacgatctttggcgaatcct 323 ||||| ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct: 1376 aagtattctttgctgttcatctccgttaatctgctaatggtgcggtctttagcaaaacca 1317 Query: 324 agctcattgtccacacagagatcaggatcatcacttttcc 363 ||||| |||||||| || || || ||||||||||| |||| Sbjct: 1316 agctcgttgtccacgcaaaggtcgggatcatcactcttcc 1277
>ref|NM_118946.2| Arabidopsis thaliana ATPase AT4G28070 transcript variant AT4G28070.1 mRNA, complete cds Length = 2348 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 466 ccttgttctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttctgttat 525 ||||||||||||||||||||||||||| || ||||| || || |||||||| || |||| Sbjct: 1261 ccttgttctcatacattacatcaaccagtgtcacaaagcggtaagctgcagtcctattat 1202 Query: 526 g 526 | Sbjct: 1201 g 1201 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Minus Query: 264 aagtactctctgctgttgagctctgtcaacctgctaatcgtacgatctttggcgaatcct 323 ||||| ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct: 1466 aagtattctttgctgttcatctccgttaatctgctaatggtgcggtctttagcaaaacca 1407 Query: 324 agctcattgtccacacagagatcaggatcatcacttttcc 363 ||||| |||||||| || || || ||||||||||| |||| Sbjct: 1406 agctcgttgtccacgcaaaggtcgggatcatcactcttcc 1367
>gb|BT015879.1| Arabidopsis thaliana At4g28070 gene, complete cds Length = 1846 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 466 ccttgttctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttctgttat 525 ||||||||||||||||||||||||||| || ||||| || || |||||||| || |||| Sbjct: 1242 ccttgttctcatacattacatcaaccagtgtcacaaagcggtaagctgcagtcctattat 1183 Query: 526 g 526 | Sbjct: 1182 g 1182 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Minus Query: 264 aagtactctctgctgttgagctctgtcaacctgctaatcgtacgatctttggcgaatcct 323 ||||| ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct: 1447 aagtattctttgctgttcatctccgttaatctgctaatggtgcggtctttagcaaaacca 1388 Query: 324 agctcattgtccacacagagatcaggatcatcacttttcc 363 ||||| |||||||| || || || ||||||||||| |||| Sbjct: 1387 agctcgttgtccacgcaaaggtcgggatcatcactcttcc 1348
>emb|BX827763.1|CNS0A2A3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1679 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 466 ccttgttctcatacattacatcaaccaacgtgacaaaccgatacgctgcagttctgttat 525 ||||||||||||||||||||||||||| || ||||| || || |||||||| || |||| Sbjct: 1263 ccttgttctcatacattacatcaaccagtgtcacaaagcggtaagctgcagtcctattat 1204 Query: 526 g 526 | Sbjct: 1203 g 1203 Score = 40.1 bits (20), Expect = 8.4 Identities = 80/100 (80%) Strand = Plus / Minus Query: 264 aagtactctctgctgttgagctctgtcaacctgctaatcgtacgatctttggcgaatcct 323 ||||| ||| ||||||| | ||| || || |||||||| || || ||||| || || || Sbjct: 1468 aagtattctttgctgttcatctccgttaatctgctaatggtgcggtctttagcaaaacca 1409 Query: 324 agctcattgtccacacagagatcaggatcatcacttttcc 363 ||||| |||||||| || || || ||||||||||| |||| Sbjct: 1408 agctcgttgtccacgcaaaggtcgggatcatcactcttcc 1369
>ref|NM_016099.2| Homo sapiens golgi autoantigen, golgin subfamily a, 7 (GOLGA7), transcript variant 1, mRNA Length = 1919 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1362 atatttataacaaaactataat 1341
>ref|NM_001002296.1| Homo sapiens golgi autoantigen, golgin subfamily a, 7 (GOLGA7), transcript variant 2, mRNA Length = 2042 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1485 atatttataacaaaactataat 1464
>gb|BC001227.2| Homo sapiens golgi autoantigen, golgin subfamily a, 7, mRNA (cDNA clone MGC:4876 IMAGE:3456384), complete cds Length = 1904 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1347 atatttataacaaaactataat 1326
>ref|XM_844157.1| PREDICTED: Canis familiaris similar to golgi autoantigen, golgin subfamily a, 7 (LOC607476), mRNA Length = 1494 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1375 atatttataacaaaactataat 1354
>emb|CR617602.1| full-length cDNA clone CS0DA001YL17 of Neuroblastoma of Homo sapiens (human) Length = 1850 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1332 atatttataacaaaactataat 1311
>emb|CR616191.1| full-length cDNA clone CS0DA002YE22 of Neuroblastoma of Homo sapiens (human) Length = 1911 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1389 atatttataacaaaactataat 1368
>emb|CR609818.1| full-length cDNA clone CS0DI064YA01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1863 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1358 atatttataacaaaactataat 1337
>emb|CR606993.1| full-length cDNA clone CS0DI001YL07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1822 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1310 atatttataacaaaactataat 1289
>emb|CR596558.1| full-length cDNA clone CS0DI026YE24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1821 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1310 atatttataacaaaactataat 1289
>gb|AC009630.14| Homo sapiens chromosome 8, clone RP11-360L9, complete sequence Length = 219622 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 138187 atatttataacaaaactataat 138208
>gb|AF125102.1|AF125102 Homo sapiens HSPC041 protein mRNA, complete cds Length = 1898 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1326 atatttataacaaaactataat 1305
>dbj|AB104615.1| Homo sapiens gcp16 mRNA for Golgi complex-associated protein of 16kDa, complete cds Length = 1949 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1342 atatttataacaaaactataat 1321
>dbj|AK026613.1| Homo sapiens cDNA: FLJ22960 fis, clone KAT10193, highly similar to AF125102 Homo sapiens HSPC041 protein mRNA Length = 1954 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 141 atatttataacaaaactataat 162 |||||||||||||||||||||| Sbjct: 1347 atatttataacaaaactataat 1326
>emb|AL109760.3|HSJ513G18 Human DNA sequence from clone RP3-513G18 on chromosome 4, complete sequence Length = 112560 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 gtgcaggggctgttgccattt 247 ||||||||||||||||||||| Sbjct: 89404 gtgcaggggctgttgccattt 89424
>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14, complete sequence Length = 189425 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 atatttataacaaaactataa 161 ||||||||||||||||||||| Sbjct: 116869 atatttataacaaaactataa 116889
>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8, complete sequence Length = 168607 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 atatttataacaaaactataa 161 ||||||||||||||||||||| Sbjct: 80610 atatttataacaaaactataa 80630
>ref|NM_001035484.1| Bos taurus golgi autoantigen, golgin subfamily a, 7 (GOLGA7), mRNA Length = 1836 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atttataacaaaactataat 162 |||||||||||||||||||| Sbjct: 1290 atttataacaaaactataat 1271
>gb|AC157593.4| Mus musculus BAC clone RP23-254B18 from chromosome 16, complete sequence Length = 204167 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 taatatttataacaaaacta 158 |||||||||||||||||||| Sbjct: 90951 taatatttataacaaaacta 90970
>gb|AC147225.3| Mus musculus BAC clone RP23-105L19 from chromosome 6, complete sequence Length = 210239 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ccttgttctcatacattaca 485 |||||||||||||||||||| Sbjct: 130988 ccttgttctcatacattaca 131007
>gb|AC168278.2| Mus musculus BAC RP24-83C9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 247493 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 ccttgttctcatacattaca 485 |||||||||||||||||||| Sbjct: 185820 ccttgttctcatacattaca 185801
>gb|AC146605.3| Mus musculus BAC clone RP23-304J7 from chromosome 14, complete sequence Length = 225868 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaaccaacatttctcccatt 118 |||||||||||||||||||| Sbjct: 27721 aaaccaacatttctcccatt 27740
>gb|AC102083.12| Mus musculus chromosome 16, clone RP23-269L18, complete sequence Length = 205875 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 taatatttataacaaaacta 158 |||||||||||||||||||| Sbjct: 197319 taatatttataacaaaacta 197300
>gb|AF029308.1|HTCRBCHR9 Homo sapiens chromosome 9 duplication of the T cell receptor beta locus and trypsinogen gene families Length = 216293 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttaatatttataacaaaact 157 |||||||||||||||||||| Sbjct: 78990 ttaatatttataacaaaact 79009
>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1, complete sequence Length = 208746 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 taatatttataacaaaacta 158 |||||||||||||||||||| Sbjct: 197485 taatatttataacaaaacta 197466
>gb|AC122056.4| Mus musculus BAC clone RP24-466A3 from chromosome 14, complete sequence Length = 179685 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaaccaacatttctcccatt 118 |||||||||||||||||||| Sbjct: 137226 aaaccaacatttctcccatt 137207
>emb|CR381531.7| Zebrafish DNA sequence from clone DKEY-190G6 in linkage group 23, complete sequence Length = 149672 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tatttataacaaaactataa 161 |||||||||||||||||||| Sbjct: 82910 tatttataacaaaactataa 82891
>emb|AL356489.14| Human DNA sequence from clone RP11-384P7 on chromosome 9 Contains the TRBV25OR9-2 gene for T cell receptor beta variable 25/OR9-2, the PTENP1 gene for phosphatase and tensin homolog (mutated in multiple advanced cancers 1) pseudogene 1 (PTH2, PTEN2, PSIPTEN), a T-cell receptor beta chain V region protein pseudogene, two novel genes, the 5' end of the PRSS3 gene for serine protease 3 (mesotrypsin) and two CpG islands, complete sequence Length = 130639 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttaatatttataacaaaact 157 |||||||||||||||||||| Sbjct: 30343 ttaatatttataacaaaact 30362
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17, complete sequence Length = 202430 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 catttctcccattcctccct 125 |||||||||||||||||||| Sbjct: 165380 catttctcccattcctccct 165361
>emb|X64098.1|VCTCP V.cholerae tcp gene cluster for biosynthesis of the TCP pilus Length = 13824 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tgacaggaaaaccaacattt 110 |||||||||||||||||||| Sbjct: 2769 tgacaggaaaaccaacattt 2750
>emb|AL161421.11| Human DNA sequence from clone RP11-156K23 on chromosome 13 Contains the 5' end of a novel gene (containd FLJ31509 and KIAA0970), a RAD17 homolog (S. pombe) pseudogene and a CpG island, complete sequence Length = 151445 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttctcccattcctccctgag 128 |||||||||||||||||||| Sbjct: 54276 ttctcccattcctccctgag 54295
>emb|AL132793.24|HSDJ324B8 Human DNA sequence from clone RP3-324B8 on chromosome 6q12-13, complete sequence Length = 120535 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aatatttataacaaaactat 159 |||||||||||||||||||| Sbjct: 55423 aatatttataacaaaactat 55404
>emb|X74730.1|VCTCPHPAB V.cholerae tcpH, tcpP, tcpA,tcpB, tcpQ, tcpI and tcpC genes Length = 5024 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tgacaggaaaaccaacattt 110 |||||||||||||||||||| Sbjct: 1830 tgacaggaaaaccaacattt 1811
>emb|AL929272.10| Mouse DNA sequence from clone RP23-69H10 on chromosome 11 Contains the 5' end of the Vrk2 gene for vaccinia related kinase 2 and a CpG island, complete sequence Length = 196753 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cacactgtgaaattacatgc 85 |||||||||||||||||||| Sbjct: 54838 cacactgtgaaattacatgc 54857
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68 Length = 199749 Score = 40.1 bits (20), Expect = 8.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 292 acctgctaatcgtacgatctttggcgaatcctagctcattgtccacacagagatcaggat 351 |||||||||| || || ||||| || || || ||||| |||||||| || || || |||| Sbjct: 63800 acctgctaatggtgcggtctttagcaaaaccaagctcgttgtccacgcaaaggtcgggat 63741 Query: 352 catcacttttcc 363 ||||||| |||| Sbjct: 63740 catcactcttcc 63729
>emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project) Length = 83693 Score = 40.1 bits (20), Expect = 8.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 292 acctgctaatcgtacgatctttggcgaatcctagctcattgtccacacagagatcaggat 351 |||||||||| || || ||||| || || || ||||| |||||||| || || || |||| Sbjct: 58664 acctgctaatggtgcggtctttagcaaaaccaagctcgttgtccacgcaaaggtcgggat 58605 Query: 352 catcacttttcc 363 ||||||| |||| Sbjct: 58604 catcactcttcc 58593
>emb|BX470266.10| Zebrafish DNA sequence from clone DKEYP-9D4 in linkage group 1, complete sequence Length = 194021 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 taatatttataacaaaacta 158 |||||||||||||||||||| Sbjct: 122733 taatatttataacaaaacta 122714
>ref|NG_001337.1| Homo sapiens T cell receptor beta variable orphans on chromosome 9 (TRBVOR9@) on chromosome 9 Length = 194564 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttaatatttataacaaaact 157 |||||||||||||||||||| Sbjct: 78943 ttaatatttataacaaaact 78962
>ref|NM_073859.3| Caenorhabditis elegans W07G4.4 (W07G4.4) mRNA, complete cds Length = 2045 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 acatcacggcacactgtgaa 76 |||||||||||||||||||| Sbjct: 586 acatcacggcacactgtgaa 567
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tatttataacaaaactataa 161 |||||||||||||||||||| Sbjct: 591778 tatttataacaaaactataa 591797
>dbj|AP002805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0004I20 Length = 94135 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tatttataacaaaactataa 161 |||||||||||||||||||| Sbjct: 68395 tatttataacaaaactataa 68414
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tatttataacaaaactataa 161 |||||||||||||||||||| Sbjct: 137286 tatttataacaaaactataa 137305
>gb|AC002485.1|AC002485 Human PAC clone CTA-212D3, complete sequence Length = 215609 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aatatttataacaaaactat 159 |||||||||||||||||||| Sbjct: 212635 aatatttataacaaaactat 212654
>emb|Z78018.1|CEW07G4 Caenorhabditis elegans Cosmid W07G4, complete sequence Length = 31001 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 acatcacggcacactgtgaa 76 |||||||||||||||||||| Sbjct: 24714 acatcacggcacactgtgaa 24695
>gb|AC140288.5| Mus musculus BAC clone RP23-348K1 from 14, complete sequence Length = 250519 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaaccaacatttctcccatt 118 |||||||||||||||||||| Sbjct: 38040 aaaccaacatttctcccatt 38021
>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16, complete sequence Length = 196875 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 ttaatatttataacaaaactataa 161 ||||||||||||||| |||||||| Sbjct: 194841 ttaatatttataacataactataa 194864
>gb|BT020714.1| Bos taurus golgi autoantigen, golgin subfamily a, 7 (GOLGA7), mRNA, complete cds Length = 1836 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atttataacaaaactataat 162 |||||||||||||||||||| Sbjct: 1290 atttataacaaaactataat 1271
>gb|AC154560.3| Mus musculus BAC clone RP23-400E20 from chromosome 17, complete sequence Length = 197657 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 ttcttaaatagcccaaaata 589 |||||||||||||||||||| Sbjct: 124083 ttcttaaatagcccaaaata 124064
>gb|AC123937.3| Mus musculus BAC clone RP23-408M14 from 6, complete sequence Length = 164294 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ccttgttctcatacattaca 485 |||||||||||||||||||| Sbjct: 86835 ccttgttctcatacattaca 86854
>emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chromosome 17, complete sequence Length = 210893 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 catttctcccattcctccct 125 |||||||||||||||||||| Sbjct: 158729 catttctcccattcctccct 158748 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,640,477 Number of Sequences: 3902068 Number of extensions: 4640477 Number of successful extensions: 83039 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82875 Number of HSP's gapped (non-prelim): 162 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)