ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC121593.3| Mus musculus BAC clone RP23-292N18 from 6, comple... 38 0.73
2gb|AC164642.3| Mus musculus BAC clone RP23-248L4 from chromosome... 38 0.73
3ref|XM_993739.1| PREDICTED: Mus musculus cDNA sequence AK129128 ... 36 2.9
4ref|XM_922094.2| PREDICTED: Mus musculus cDNA sequence AK129128,... 36 2.9
5ref|XM_898433.2| PREDICTED: Mus musculus cDNA sequence AK129128,... 36 2.9
6dbj|AK085121.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 36 2.9
7gb|AC154226.3| Mus musculus BAC clone RP24-353J14 from chromosom... 36 2.9
8gb|AC154355.1| Mus musculus BAC clone RP23-220N4 from 13, comple... 36 2.9
9emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chr... 36 2.9

>gb|AC121593.3| Mus musculus BAC clone RP23-292N18 from 6, complete sequence
          Length = 179881

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 9     gtgcaccaccacatncacatgc 30
             |||||||||||||| |||||||
Sbjct: 12992 gtgcaccaccacatacacatgc 12971



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>gb|AC164642.3| Mus musculus BAC clone RP23-248L4 from chromosome 6, complete
           sequence
          Length = 212166

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 9   gtgcaccaccacatncacatgc 30
           |||||||||||||| |||||||
Sbjct: 487 gtgcaccaccacatacacatgc 508



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>ref|XM_993739.1| PREDICTED: Mus musculus cDNA sequence AK129128 (AK129128), mRNA
          Length = 5001

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aactggtgcaccaccaca 21
            ||||||||||||||||||
Sbjct: 4824 aactggtgcaccaccaca 4807



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>ref|XM_922094.2| PREDICTED: Mus musculus cDNA sequence AK129128, transcript variant 5
            (AK129128), mRNA
          Length = 5781

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aactggtgcaccaccaca 21
            ||||||||||||||||||
Sbjct: 5204 aactggtgcaccaccaca 5187



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>ref|XM_898433.2| PREDICTED: Mus musculus cDNA sequence AK129128, transcript variant 2
            (AK129128), mRNA
          Length = 5381

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aactggtgcaccaccaca 21
            ||||||||||||||||||
Sbjct: 5204 aactggtgcaccaccaca 5187



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>dbj|AK085121.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430040E23 product:unclassifiable, full
            insert sequence
          Length = 1485

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aactggtgcaccaccaca 21
            ||||||||||||||||||
Sbjct: 1374 aactggtgcaccaccaca 1357



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>gb|AC154226.3| Mus musculus BAC clone RP24-353J14 from chromosome 13, complete
             sequence
          Length = 196991

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aactggtgcaccaccaca 21
             ||||||||||||||||||
Sbjct: 20631 aactggtgcaccaccaca 20614



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>gb|AC154355.1| Mus musculus BAC clone RP23-220N4 from 13, complete sequence
          Length = 168447

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aactggtgcaccaccaca 21
             ||||||||||||||||||
Sbjct: 63996 aactggtgcaccaccaca 63979



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>emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chromosome 13, complete
              sequence
          Length = 199355

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      aactggtgcaccaccaca 21
              ||||||||||||||||||
Sbjct: 122452 aactggtgcaccaccaca 122435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 271,316
Number of Sequences: 3902068
Number of extensions: 271316
Number of successful extensions: 96970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96956
Number of HSP's gapped (non-prelim): 14
length of query: 33
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 13
effective length of database: 17,155,003,908
effective search space: 223015050804
effective search space used: 223015050804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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