>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)|
            (Protein GYMNOS)
          Length = 1384

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 40/204 (19%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
 Frame = -2

Query: 656  KRYHILEKCLDIEYAV----IKTKTPVPDDLTEQNVPMGHSPAVPDIS---EVLRELPPL 498
            KR  +LEK ++ EYA     +   + +P +  E    +  +  V  I    E+L  LP  
Sbjct: 1178 KRVLLLEKAMNYEYAEEYYGLGGSSSIPTEEPEAEPKIADTVGVSFIEVDDEMLDGLPKT 1237

Query: 497  VPISAKEV---ASDGSTDQAHLSHLYNKMCGVLEDSGARALNSFCGDKAASASLANSLHQ 327
             PI+++E+   A D +  +  ++  YN+MC +L+++   ++ ++  ++  S  +  S   
Sbjct: 1238 DPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPSTKVNESFRA 1297

Query: 326  FEKVCEDVDRVLRVQENGAATPKEEV---VDAIVEEAKPPQVPPQDAGAVAANGVGPSTV 156
             + +  +++ +L +  + + + +++    ++ +  +    +  P   G V  N V     
Sbjct: 1298 LKSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDTAEETKPLRGGVVDLNVVEGEEN 1357

Query: 155  KPEDKMEIDG*CVGMKTESKPPSV 84
              E    +D      K E KP ++
Sbjct: 1358 IAEASGSVDVKMEEAKEEEKPKNM 1381

>MUCB1_XENLA (P38565) Integumentary mucin B.1 (FIM-B.1) (Fragment)|
          Length = 398

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 596 TPVPDDLTEQNVPMGHSPAVPDISEVLRELPPLVPISAKEVASDGSTDQAHLSH 435
           TP P + T  +VP G S   P  +  LR +PP V   A  V +   T      H
Sbjct: 69  TPAPSETTVPSVPSGESTPAPSETTELRIIPPEVSTVAVPVTTGQITPAVTTEH 122

>HSP7F_CANGA (Q6FJI3) Heat shock protein homolog SSE1|
          Length = 694

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 647 HILEKCLDIEYAVIKTKTPVPDDLTEQNVPMGHSPAVPDISEVLR 513
           HI+E+   +E  V+K + P+P+D  E         AVP++ EV +
Sbjct: 490 HIIEEAYSLEDIVVKEEVPLPEDAPED--------AVPEVKEVTK 526

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -2

Query: 281 ENGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKME 135
           E  A T   EV  A+ EE K  +  P +  A AA    PST   E+K E
Sbjct: 141 EAAAETTSREV--AVEEEKKEEEAAPAEPAAAAAEAAAPSTEVVEEKKE 187

>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
 Frame = -2

Query: 545  PAVPDISEVLREL-PPLVPISAKEVASDGSTDQAHLSHLYNKMCGVLEDSGARALNSFCG 369
            P++   +E L+ L P + P++ +E   D   D + +S          ED   R  +    
Sbjct: 862  PSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRIS----------EDETERNGDDGTH 911

Query: 368  DKAASASLANSLHQFEKVCEDVDRVLRV--QENGAATPKEEVVDAIVEEAKPPQVPPQDA 195
            DK              K+C  V +V+    QENG    +EE  +    EA+PP VPPQ +
Sbjct: 912  DKGL------------KICRTVTQVVPAEGQENGQREEEEEEKE---PEAEPP-VPPQVS 955

Query: 194  GAVA 183
              VA
Sbjct: 956  VEVA 959

>TNNT_DROME (P19351) Troponin T, skeletal muscle (Protein upheld) (Protein|
           intended thorax)
          Length = 397

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 281 ENGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEID 129
           E   ++ +EEVV+   EE KPPQ P +  G        P  +K +D+   D
Sbjct: 5   EEYTSSEEEEVVEETREETKPPQTPAEGEG-------DPEFIKRQDQKRSD 48

>RGNEF_MOUSE (P97433) Rho-guanine nucleotide exchange factor (Rho-interacting|
           protein 2) (RhoGEF) (RIP2)
          Length = 1693

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -2

Query: 278 NGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVGMKTES 99
           +GAA  +EEV +  +E  + P    +DA ++ +   GPS  + +D++ +D    G+K   
Sbjct: 295 SGAAETEEEVRN--LESGRSPSEEEEDAKSIKSQVDGPSEHEDQDRLALDRSFDGLKKSK 352

Query: 98  KPPS 87
             P+
Sbjct: 353 HVPA 356

>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 949

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
 Frame = -2

Query: 560 PMGHSPAVPDISEVLRELPPLVPISAKEVASDGSTDQAHLSHLYNKMCGVLE-DSGARAL 384
           P GH P  P +      + P+  +++      GS D   LS   + +  + E + G+   
Sbjct: 487 PSGHHPLPPQMLSAASHITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERNKGSGPR 546

Query: 383 NSFCGDKAASASL-----ANSLHQFEKVCEDVDRVLRVQENGAATPKEEVV-----DAIV 234
           +S   DK+  +++     A++ HQ  +V   +     +    +  P+ +VV     D ++
Sbjct: 547 SSMKVDKSFGSAMMDVLPASAPHQPVQVLSGLSESSSMSPTVSFGPRTKVVHASTLDRVL 606

Query: 233 EEAKPPQVPPQDAGAVAANGVGPSTV 156
           + A+ P +  +   + AA G  PSTV
Sbjct: 607 KTAQQPALVVET--STAATGT-PSTV 629

>EVX1_HUMAN (P49640) Homeobox even-skipped homolog protein 1 (EVX-1)|
          Length = 407

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -2

Query: 284 QENGAATPKEEVVDAIVEEAKPPQVPPQDAGAVAANGVGP 165
           +E G   P+EE VD +   A  P   PQ AGA A  G GP
Sbjct: 58  RERGGGGPEEEPVDGLAGSAAGPGAEPQVAGA-AMLGPGP 96

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
 Frame = -2

Query: 413 VLEDSGARALNSFCGDKAASASLANSLHQFEKVCEDVDRVLRVQENGAATPKEEVVDA-- 240
           V EDS    LN F G      +   +L +FE + E+V R         A  K+   DA  
Sbjct: 77  VYEDSQPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAVAQNTAAAKKSASDAST 136

Query: 239 IVEEAKPPQVPPQDAGAVAANGVG 168
              EA        D+   A+   G
Sbjct: 137 SAREAATHAADAADSARAASTSAG 160

>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1534

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 408 KHTTHLVVKMGKVCLVS*AIRSHFFGRDWYKRGKFSQHFT 527
           KH  H +V    +C     I S     DW KRG  S HFT
Sbjct: 583 KHNVHEIVSASVICCHRVKIDSPMRSEDWQKRGMLS-HFT 621

>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 503  PLVPISAKEVASDGSTDQAHLSHLYNKMCGVLEDSGARALNSF--CGDKAASASLANSLH 330
            P VP    +   DG  DQ H  HLY   C  + +SG +AL+    CG       L + L 
Sbjct: 1379 PFVPGKKIDHVKDGVMDQVHAKHLYK--CWSVANSG-KALHHIYACG-------LKDELR 1428

Query: 329  QFEKVCEDVDRVL 291
              +KV E   R+L
Sbjct: 1429 PLDKVKEGKKRLL 1441

>AROC_IDILO (Q5QW40) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -2

Query: 491 ISAKEVASDGSTDQAHLSHLYNKMCGVLEDSGARALNSFCGDKAASASLANSLHQFEKVC 312
           I+ K +   G   QA L+ + + +   ++    R    FCGD  A  ++   + Q +K  
Sbjct: 140 IADKLLRQQGIQVQAALTQMGDVVASNIDWQQVRENELFCGDANAVEAMQELIRQLKKEG 199

Query: 311 EDVDRVLRVQENG 273
           + +   +RVQ  G
Sbjct: 200 DSIGAKIRVQATG 212

>GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3) (Rho-GDI|
           gamma) (Rho-GDI2)
          Length = 225

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 299 RVLRVQENGAATPKEEVVDAIVEEAKPP 216
           RVL   ++G +TP +EV+D IV E + P
Sbjct: 24  RVLLADKDGESTPSDEVLDEIVPEYQAP 51

>APOA_HUMAN (P08519) Apolipoprotein(a) precursor (EC 3.4.21.-) (Apo(a)) (Lp(a))|
          Length = 4548

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 650  YHILEKCLDIEYAVIKTKTPVPDDLTE---QNVPMGHSPAVPD 531
            Y  L +CL  E +V+ T T VPD  TE   +  P   SP V D
Sbjct: 3633 YCNLTQCLVTESSVLATLTVVPDPSTEASSEEAPTEQSPGVQD 3675

>MAAY4_SCHCO (P37935) Mating-type protein A-alpha Y4|
          Length = 928

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = -3

Query: 448 HTFPIFTTRCVVCLKTAVHVHSI-------RSAVTRQLPRV*PTASISLRKYVRTLIGS* 290
           + +P +  R ++  KT +    I       R      LPR+ PTA I + ++ R L    
Sbjct: 174 NAYPTYADRRILAEKTGMLTRQITVWFQNHRRRAKGPLPRMSPTAKIPMEEFERQLENLA 233

Query: 289 ESKRTALLPPKRKW*MPSSKKPSL 218
                 LLPP  +   P ++  SL
Sbjct: 234 RKIVPVLLPPTLRRFAPGNENKSL 257

>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2|
          Length = 891

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -2

Query: 272 AATPKEEVVDAIVEEAKPPQVP---PQDAGAVAANGVGPSTVKPEDKMEIDG 126
           AA+PK+E V      +KPP +P   P D+G        PS+  P  + E  G
Sbjct: 56  AASPKKETVAESAPSSKPPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPG 107

>NAPA_HELPJ (Q9ZMJ1) Neutrophil-activating protein A (NAP A) (Bacterioferritin)|
          Length = 144

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -2

Query: 584 DDLTEQNVPMGHSPAVPDISEVLR----ELPPLVPISAKEVASDGSTDQAHLSHLYNKMC 417
           DDL E+ V +GH P V  +SE ++    +        +K++  +   D  HL   + ++ 
Sbjct: 52  DDLAERIVQLGHHPLV-TLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELS 110

Query: 416 GVLEDSGARALNSFCGDKAA 357
              E  G +   ++  D+ A
Sbjct: 111 NTAEKEGDKVTVTYADDQLA 130

>PACN3_HUMAN (Q9UKS6) Protein kinase C and casein kinase substrate in neurons|
           protein 3 (SH3 domain-containing protein 6511)
           (Endophilin I)
          Length = 424

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 347 LANSLHQFEKVCEDVDRVLRVQENGAATPKEEVVDAIVEEAKPPQVPPQDAGA 189
           +A +  QFE+   D  R +  +E G  +P E  + +IV        PPQ  G+
Sbjct: 292 MAMNWPQFEEWSLDTQRTISRKEKGGRSPDEVTLTSIVPTRDGTAPPPQSPGS 344

>IQGA3_HUMAN (Q86VI3) Ras GTPase-activating-like protein IQGAP3|
          Length = 1631

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -2

Query: 551  HSPAVPDISEVLRELPPLVPISAKEVASDGSTDQAHLS---HLYNKMCGV---LEDSGAR 390
            H   + ++ E L ELP +  +  + +A+DG TD + L     L NK  G+    +DS  R
Sbjct: 1304 HQDPLHELLEDLGELPTIPDLIGESIAADGHTDLSKLEVSLTLTNKFEGLEADADDSNTR 1363

Query: 389  AL 384
            +L
Sbjct: 1364 SL 1365

>MURG_COXBU (Q820X3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 358

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -2

Query: 410 LEDSGARALNSFCGDKAASASLANSLHQFEKVCEDVDRVLRVQENGAATPKEEVVDAIVE 231
           LE +GA  + S       S +  + +  FE+  +D DR+L + EN     K E V  ++ 
Sbjct: 295 LEQAGAAIIIS-----EESLTETDLMRWFEQFAQDRDRLLTMAENARKLAKPEAVQRVIA 349

Query: 230 EAK 222
           + K
Sbjct: 350 QCK 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,103,152
Number of Sequences: 219361
Number of extensions: 1951651
Number of successful extensions: 6761
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6753
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)