| Clone Name | rbags13a08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134J07, full insert sequence Length = 1886 Score = 379 bits (191), Expect = e-102 Identities = 365/423 (86%) Strand = Plus / Minus Query: 201 cttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaagc 260 |||||||||||||||||||| || | ||||||||||||||||| || || |||||||| Sbjct: 1590 cttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaat 1531 Query: 261 cacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacctta 320 || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || |||| Sbjct: 1530 catttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatctta 1471 Query: 321 caagtctagtagcaacttctttctttggttccaaactgccatcggccaacattgcttcat 380 |||| |||||||| ||||| || |||||||||||| ||||||| |||||||| || |||| Sbjct: 1470 caagcctagtagcgacttccttttttggttccaaattgccatctgccaacatagcatcat 1411 Query: 381 cctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagttggt 440 ||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||||||| Sbjct: 1410 cctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagttggt 1351 Query: 441 ccagtacagctcgctctgagcaaggactaactggacatgtatcaccttccgacgaaagta 500 | ||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 1350 caagtactgctcgctctgtgcatggactgactggacatgtatcaccttctgaagaaagta 1291 Query: 501 tacattgcatttcatctggatctgaaatgtatcctagtctcaagtatggcagcatttcag 560 | |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | Sbjct: 1290 tggattgcatttcatctggatctgaaatgtatcctagcctcaaatagggcagcatttctg 1231 Query: 561 aaatagtttgcttctctttgcctacacagacttggaatttttggattgcaagctttccat 620 ||| |||| ||||||||| || |||||||| ||||| |||||||| || ||||| |||| Sbjct: 1230 caattgtttccttctctttacccacacagacatggaaattttggatagccagcttcccat 1171 Query: 621 ttc 623 ||| Sbjct: 1170 ttc 1168
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 161 bits (81), Expect = 3e-36 Identities = 150/173 (86%) Strand = Plus / Minus Query: 198 taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 257 ||||||||||||||||||||||| || | ||||||||||||||||| || || ||||||| Sbjct: 7550074 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 7550015 Query: 258 agccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacc 317 | || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || | Sbjct: 7550014 aatcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatc 7549955 Query: 318 ttacaagtctagtagcaacttctttctttggttccaaactgccatcggccaac 370 ||||||| |||||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 7549954 ttacaagcctagtagcgacttccttttttggttccaaattgccatctgccaac 7549902 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 465 gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 524 |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 7548927 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 7548868 Query: 525 aaatgtatcctagtctcaagtatggcagcatttcagaaatagtttgcttctctttgccta 584 ||||||||||||| ||||| || ||||||||||| | ||| |||| ||||||||| || | Sbjct: 7548867 aaatgtatcctagcctcaaatagggcagcatttctgcaattgtttccttctctttaccca 7548808 Query: 585 cacagac 591 ||||||| Sbjct: 7548807 cacagac 7548801 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 377 tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 436 ||||||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||| Sbjct: 7549801 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 7549742 Query: 437 tggtccagtacagctcgctctgagcaaggact 468 ||||| ||||| |||||||||| ||| ||||| Sbjct: 7549741 tggtcaagtactgctcgctctgtgcatggact 7549710
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 161 bits (81), Expect = 3e-36 Identities = 150/173 (86%) Strand = Plus / Minus Query: 198 taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 257 ||||||||||||||||||||||| || | ||||||||||||||||| || || ||||||| Sbjct: 7549953 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 7549894 Query: 258 agccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacc 317 | || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || | Sbjct: 7549893 aatcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatc 7549834 Query: 318 ttacaagtctagtagcaacttctttctttggttccaaactgccatcggccaac 370 ||||||| |||||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 7549833 ttacaagcctagtagcgacttccttttttggttccaaattgccatctgccaac 7549781 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 465 gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 524 |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 7548806 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 7548747 Query: 525 aaatgtatcctagtctcaagtatggcagcatttcagaaatagtttgcttctctttgccta 584 ||||||||||||| ||||| || ||||||||||| | ||| |||| ||||||||| || | Sbjct: 7548746 aaatgtatcctagcctcaaatagggcagcatttctgcaattgtttccttctctttaccca 7548687 Query: 585 cacagac 591 ||||||| Sbjct: 7548686 cacagac 7548680 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 377 tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 436 ||||||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||| Sbjct: 7549680 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 7549621 Query: 437 tggtccagtacagctcgctctgagcaaggact 468 ||||| ||||| |||||||||| ||| ||||| Sbjct: 7549620 tggtcaagtactgctcgctctgtgcatggact 7549589
>emb|AL731872.2|CNS08C8C Oryza sativa chromosome 12, . BAC OJ1003_E07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113215 Score = 161 bits (81), Expect = 3e-36 Identities = 150/173 (86%) Strand = Plus / Minus Query: 198 taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 257 ||||||||||||||||||||||| || | ||||||||||||||||| || || ||||||| Sbjct: 38141 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 38082 Query: 258 agccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacc 317 | || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || | Sbjct: 38081 aatcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatc 38022 Query: 318 ttacaagtctagtagcaacttctttctttggttccaaactgccatcggccaac 370 ||||||| |||||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 38021 ttacaagcctagtagcgacttccttttttggttccaaattgccatctgccaac 37969 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 465 gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 524 |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 36994 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 36935 Query: 525 aaatgtatcctagtctcaagtatggcagcatttcagaaatagtttgcttctctttgccta 584 ||||||||||||| ||||| || ||||||||||| | ||| |||| ||||||||| || | Sbjct: 36934 aaatgtatcctagcctcaaatagggcagcatttctgcaattgtttccttctctttaccca 36875 Query: 585 cacagac 591 ||||||| Sbjct: 36874 cacagac 36868 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 377 tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 436 ||||||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||| Sbjct: 37868 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 37809 Query: 437 tggtccagtacagctcgctctgagcaaggact 468 ||||| ||||| |||||||||| ||| ||||| Sbjct: 37808 tggtcaagtactgctcgctctgtgcatggact 37777
>ref|XM_708603.1| Candida albicans SC5314 hypothetical protein (CaO19.8649), mRNA Length = 2550 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 tagcaacttctttctttggttc 351 |||||||||||||||||||||| Sbjct: 1843 tagcaacttctttctttggttc 1822
>ref|XM_708558.1| Candida albicans SC5314 hypothetical protein (CaO19.1047), mRNA Length = 2550 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 tagcaacttctttctttggttc 351 |||||||||||||||||||||| Sbjct: 1843 tagcaacttctttctttggttc 1822
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 18 aaaatggaaagtgagcatgtacgaag 43 |||||||||||||||||||| ||||| Sbjct: 89489 aaaatggaaagtgagcatgtgcgaag 89464
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 18 aaaatggaaagtgagcatgtacgaag 43 |||||||||||||||||||| ||||| Sbjct: 3807693 aaaatggaaagtgagcatgtgcgaag 3807668
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 18 aaaatggaaagtgagcatgtacgaag 43 |||||||||||||||||||| ||||| Sbjct: 3807614 aaaatggaaagtgagcatgtgcgaag 3807589
>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence Length = 158354 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 aacttctttctttggttccaaactg 358 ||||||||||||| ||||||||||| Sbjct: 80488 aacttctttcttttgttccaaactg 80512
>gb|AC136973.16| Medicago truncatula clone mth2-24n22, complete sequence Length = 109432 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 atgctaactctcaatcatcatagtg 81 ||||||||||||||| ||||||||| Sbjct: 711 atgctaactctcaataatcatagtg 735
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence Length = 176095 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 402 aaccagccaatcttgatttcaggtacaca 430 ||||||||||||||||||| || |||||| Sbjct: 5406 aaccagccaatcttgattttagatacaca 5434
>gb|AC010634.6| Homo sapiens chromosome 5 clone CTD-2318H23, complete sequence Length = 118994 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 402 aaccagccaatcttgatttcaggtacaca 430 ||||||||||||||||||| || |||||| Sbjct: 104789 aaccagccaatcttgattttagatacaca 104817
>gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome 13, complete sequence Length = 157332 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tacagctcgctctgagcaag 464 |||||||||||||||||||| Sbjct: 1866 tacagctcgctctgagcaag 1847
>gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) gene, complete cds Length = 87633 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 aaacaaatcaatgcacactt 131 |||||||||||||||||||| Sbjct: 48463 aaacaaatcaatgcacactt 48444
>emb|Z83244.1|CEW06F12 Caenorhabditis elegans Cosmid W06F12, complete sequence Length = 29520 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tacatggctgaaaaaacaaa 118 |||||||||||||||||||| Sbjct: 13448 tacatggctgaaaaaacaaa 13467
>ref|XM_759885.1| Theileria parva strain Muguga hypothetical protein (TP02_0412) partial mRNA Length = 1923 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tcatcctcatccaaattagt 396 |||||||||||||||||||| Sbjct: 1070 tcatcctcatccaaattagt 1051
>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence Length = 210140 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tgtgcaataaaactgtttgc 152 |||||||||||||||||||| Sbjct: 125079 tgtgcaataaaactgtttgc 125098
>gb|AC098976.2| Homo sapiens BAC clone RP11-751L19 from 4, complete sequence Length = 165221 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 atcatcatagtgaacataca 89 |||||||||||||||||||| Sbjct: 109464 atcatcatagtgaacataca 109483
>dbj|AK162653.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830144B01 product:unclassifiable, full insert sequence Length = 4247 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tacagctcgctctgagcaag 464 |||||||||||||||||||| Sbjct: 3431 tacagctcgctctgagcaag 3412
>gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence Length = 153198 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tttcaattcaggagcatata 224 |||||||||||||||||||| Sbjct: 19818 tttcaattcaggagcatata 19799
>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence Length = 169812 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 aaacaaatcaatgcacactt 131 |||||||||||||||||||| Sbjct: 144880 aaacaaatcaatgcacactt 144899
>dbj|AK041884.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630043P06 product:unclassifiable, full insert sequence Length = 2345 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tacagctcgctctgagcaag 464 |||||||||||||||||||| Sbjct: 105 tacagctcgctctgagcaag 86
>dbj|AK174776.1| Ciona intestinalis cDNA, clone:cilv016i18, full insert sequence Length = 984 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgatttcaggtacacaacaa 434 |||||||||||||||||||| Sbjct: 366 tgatttcaggtacacaacaa 347
>dbj|BS000200.1| Pan troglodytes chromosome 22 clone:PTB-035B21, map 22, partial sequences, complete sequence Length = 31919 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 acagccatgcagcattttct 308 |||||||||||||||||||| Sbjct: 17315 acagccatgcagcattttct 17334
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 caaactgccatcggccaaca 371 |||||||||||||||||||| Sbjct: 152440 caaactgccatcggccaaca 152421
>gb|AC093471.8| Mus musculus chromosome 3, clone RP23-29M11, complete sequence Length = 193703 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 575 tctttgcctacacagacttggaat 598 |||||||| ||||||||||||||| Sbjct: 176213 tctttgcccacacagacttggaat 176190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,324,964 Number of Sequences: 3902068 Number of extensions: 6324964 Number of successful extensions: 176576 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176352 Number of HSP's gapped (non-prelim): 224 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)