ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK068145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
4emb|AL731872.2|CNS08C8C Oryza sativa chromosome 12, . BAC OJ1003... 161 3e-36
5ref|XM_708603.1| Candida albicans SC5314 hypothetical protein (C... 44 0.54
6ref|XM_708558.1| Candida albicans SC5314 hypothetical protein (C... 44 0.54
7gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
10gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome... 42 2.2
11gb|AC136973.16| Medicago truncatula clone mth2-24n22, complete s... 42 2.2
12gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, compl... 42 2.2
13gb|AC010634.6| Homo sapiens chromosome 5 clone CTD-2318H23, comp... 42 2.2
14gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome... 40 8.5
15gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) ... 40 8.5
16emb|Z83244.1|CEW06F12 Caenorhabditis elegans Cosmid W06F12, comp... 40 8.5
17ref|XM_759885.1| Theileria parva strain Muguga hypothetical prot... 40 8.5
18gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 40 8.5
19gb|AC098976.2| Homo sapiens BAC clone RP11-751L19 from 4, comple... 40 8.5
20dbj|AK162653.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 8.5
21gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, comp... 40 8.5
22gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, comple... 40 8.5
23dbj|AK041884.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 8.5
24dbj|AK174776.1| Ciona intestinalis cDNA, clone:cilv016i18, full ... 40 8.5
25dbj|BS000200.1| Pan troglodytes chromosome 22 clone:PTB-035B21, ... 40 8.5
26gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 40 8.5
27gb|AC093471.8| Mus musculus chromosome 3, clone RP23-29M11, comp... 40 8.5

>dbj|AK068145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134J07, full
            insert sequence
          Length = 1886

 Score =  379 bits (191), Expect = e-102
 Identities = 365/423 (86%)
 Strand = Plus / Minus

                                                                        
Query: 201  cttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaagc 260
            |||||||||||||||||||| || | ||||||||||||||||| || || ||||||||  
Sbjct: 1590 cttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaat 1531

                                                                        
Query: 261  cacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacctta 320
            || |||||||||| ||||||||||  ||||| ||||||| || ||||||||| || ||||
Sbjct: 1530 catttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatctta 1471

                                                                        
Query: 321  caagtctagtagcaacttctttctttggttccaaactgccatcggccaacattgcttcat 380
            |||| |||||||| ||||| || |||||||||||| ||||||| |||||||| || ||||
Sbjct: 1470 caagcctagtagcgacttccttttttggttccaaattgccatctgccaacatagcatcat 1411

                                                                        
Query: 381  cctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagttggt 440
            ||||||||||| | || |||||| ||||||||| ||| | || |||  ||||||||||||
Sbjct: 1410 cctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagttggt 1351

                                                                        
Query: 441  ccagtacagctcgctctgagcaaggactaactggacatgtatcaccttccgacgaaagta 500
            | ||||| |||||||||| ||| ||||| |||||||||||||||||||| || |||||||
Sbjct: 1350 caagtactgctcgctctgtgcatggactgactggacatgtatcaccttctgaagaaagta 1291

                                                                        
Query: 501  tacattgcatttcatctggatctgaaatgtatcctagtctcaagtatggcagcatttcag 560
            |  |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 1290 tggattgcatttcatctggatctgaaatgtatcctagcctcaaatagggcagcatttctg 1231

                                                                        
Query: 561  aaatagtttgcttctctttgcctacacagacttggaatttttggattgcaagctttccat 620
             ||| |||| ||||||||| || |||||||| ||||| |||||||| || ||||| ||||
Sbjct: 1230 caattgtttccttctctttacccacacagacatggaaattttggatagccagcttcccat 1171

               
Query: 621  ttc 623
            |||
Sbjct: 1170 ttc 1168



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  161 bits (81), Expect = 3e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                           
Query: 198     taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 257
               ||||||||||||||||||||||| || | ||||||||||||||||| || || |||||||
Sbjct: 7550074 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 7550015

                                                                           
Query: 258     agccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacc 317
               |  || |||||||||| ||||||||||  ||||| ||||||| || ||||||||| || |
Sbjct: 7550014 aatcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatc 7549955

                                                                    
Query: 318     ttacaagtctagtagcaacttctttctttggttccaaactgccatcggccaac 370
               ||||||| |||||||| ||||| || |||||||||||| ||||||| ||||||
Sbjct: 7549954 ttacaagcctagtagcgacttccttttttggttccaaattgccatctgccaac 7549902



 Score =  141 bits (71), Expect = 3e-30
 Identities = 113/127 (88%)
 Strand = Plus / Minus

                                                                           
Query: 465     gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 524
               |||| |||||||||||||||||||| || ||||||||  |||||||||||||||||||||
Sbjct: 7548927 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 7548868

                                                                           
Query: 525     aaatgtatcctagtctcaagtatggcagcatttcagaaatagtttgcttctctttgccta 584
               ||||||||||||| ||||| || ||||||||||| | ||| |||| ||||||||| || |
Sbjct: 7548867 aaatgtatcctagcctcaaatagggcagcatttctgcaattgtttccttctctttaccca 7548808

                      
Query: 585     cacagac 591
               |||||||
Sbjct: 7548807 cacagac 7548801



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                           
Query: 377     tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 436
               ||||||||||||||| | || |||||| ||||||||| ||| | || |||  ||||||||
Sbjct: 7549801 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 7549742

                                               
Query: 437     tggtccagtacagctcgctctgagcaaggact 468
               ||||| ||||| |||||||||| ||| |||||
Sbjct: 7549741 tggtcaagtactgctcgctctgtgcatggact 7549710



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  161 bits (81), Expect = 3e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                           
Query: 198     taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 257
               ||||||||||||||||||||||| || | ||||||||||||||||| || || |||||||
Sbjct: 7549953 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 7549894

                                                                           
Query: 258     agccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacc 317
               |  || |||||||||| ||||||||||  ||||| ||||||| || ||||||||| || |
Sbjct: 7549893 aatcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatc 7549834

                                                                    
Query: 318     ttacaagtctagtagcaacttctttctttggttccaaactgccatcggccaac 370
               ||||||| |||||||| ||||| || |||||||||||| ||||||| ||||||
Sbjct: 7549833 ttacaagcctagtagcgacttccttttttggttccaaattgccatctgccaac 7549781



 Score =  141 bits (71), Expect = 3e-30
 Identities = 113/127 (88%)
 Strand = Plus / Minus

                                                                           
Query: 465     gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 524
               |||| |||||||||||||||||||| || ||||||||  |||||||||||||||||||||
Sbjct: 7548806 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 7548747

                                                                           
Query: 525     aaatgtatcctagtctcaagtatggcagcatttcagaaatagtttgcttctctttgccta 584
               ||||||||||||| ||||| || ||||||||||| | ||| |||| ||||||||| || |
Sbjct: 7548746 aaatgtatcctagcctcaaatagggcagcatttctgcaattgtttccttctctttaccca 7548687

                      
Query: 585     cacagac 591
               |||||||
Sbjct: 7548686 cacagac 7548680



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                           
Query: 377     tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 436
               ||||||||||||||| | || |||||| ||||||||| ||| | || |||  ||||||||
Sbjct: 7549680 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 7549621

                                               
Query: 437     tggtccagtacagctcgctctgagcaaggact 468
               ||||| ||||| |||||||||| ||| |||||
Sbjct: 7549620 tggtcaagtactgctcgctctgtgcatggact 7549589



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>emb|AL731872.2|CNS08C8C Oryza sativa chromosome 12, . BAC OJ1003_E07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113215

 Score =  161 bits (81), Expect = 3e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                         
Query: 198   taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 257
             ||||||||||||||||||||||| || | ||||||||||||||||| || || |||||||
Sbjct: 38141 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 38082

                                                                         
Query: 258   agccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacc 317
             |  || |||||||||| ||||||||||  ||||| ||||||| || ||||||||| || |
Sbjct: 38081 aatcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatc 38022

                                                                  
Query: 318   ttacaagtctagtagcaacttctttctttggttccaaactgccatcggccaac 370
             ||||||| |||||||| ||||| || |||||||||||| ||||||| ||||||
Sbjct: 38021 ttacaagcctagtagcgacttccttttttggttccaaattgccatctgccaac 37969



 Score =  141 bits (71), Expect = 3e-30
 Identities = 113/127 (88%)
 Strand = Plus / Minus

                                                                         
Query: 465   gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 524
             |||| |||||||||||||||||||| || ||||||||  |||||||||||||||||||||
Sbjct: 36994 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 36935

                                                                         
Query: 525   aaatgtatcctagtctcaagtatggcagcatttcagaaatagtttgcttctctttgccta 584
             ||||||||||||| ||||| || ||||||||||| | ||| |||| ||||||||| || |
Sbjct: 36934 aaatgtatcctagcctcaaatagggcagcatttctgcaattgtttccttctctttaccca 36875

                    
Query: 585   cacagac 591
             |||||||
Sbjct: 36874 cacagac 36868



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                         
Query: 377   tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 436
             ||||||||||||||| | || |||||| ||||||||| ||| | || |||  ||||||||
Sbjct: 37868 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 37809

                                             
Query: 437   tggtccagtacagctcgctctgagcaaggact 468
             ||||| ||||| |||||||||| ||| |||||
Sbjct: 37808 tggtcaagtactgctcgctctgtgcatggact 37777



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>ref|XM_708603.1| Candida albicans SC5314 hypothetical protein (CaO19.8649), mRNA
          Length = 2550

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 330  tagcaacttctttctttggttc 351
            ||||||||||||||||||||||
Sbjct: 1843 tagcaacttctttctttggttc 1822



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>ref|XM_708558.1| Candida albicans SC5314 hypothetical protein (CaO19.1047), mRNA
          Length = 2550

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 330  tagcaacttctttctttggttc 351
            ||||||||||||||||||||||
Sbjct: 1843 tagcaacttctttctttggttc 1822



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>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0050E08, complete sequence
          Length = 180499

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 18    aaaatggaaagtgagcatgtacgaag 43
             |||||||||||||||||||| |||||
Sbjct: 89489 aaaatggaaagtgagcatgtgcgaag 89464



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 18      aaaatggaaagtgagcatgtacgaag 43
               |||||||||||||||||||| |||||
Sbjct: 3807693 aaaatggaaagtgagcatgtgcgaag 3807668



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 18      aaaatggaaagtgagcatgtacgaag 43
               |||||||||||||||||||| |||||
Sbjct: 3807614 aaaatggaaagtgagcatgtgcgaag 3807589



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>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence
          Length = 158354

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 334   aacttctttctttggttccaaactg 358
             ||||||||||||| |||||||||||
Sbjct: 80488 aacttctttcttttgttccaaactg 80512



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>gb|AC136973.16| Medicago truncatula clone mth2-24n22, complete sequence
          Length = 109432

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 57  atgctaactctcaatcatcatagtg 81
           ||||||||||||||| |||||||||
Sbjct: 711 atgctaactctcaataatcatagtg 735



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>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 402  aaccagccaatcttgatttcaggtacaca 430
            ||||||||||||||||||| || ||||||
Sbjct: 5406 aaccagccaatcttgattttagatacaca 5434



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>gb|AC010634.6| Homo sapiens chromosome 5 clone CTD-2318H23, complete sequence
          Length = 118994

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 402    aaccagccaatcttgatttcaggtacaca 430
              ||||||||||||||||||| || ||||||
Sbjct: 104789 aaccagccaatcttgattttagatacaca 104817



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>gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome 13, complete
            sequence
          Length = 157332

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 445  tacagctcgctctgagcaag 464
            ||||||||||||||||||||
Sbjct: 1866 tacagctcgctctgagcaag 1847



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>gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) gene, complete cds
          Length = 87633

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   aaacaaatcaatgcacactt 131
             ||||||||||||||||||||
Sbjct: 48463 aaacaaatcaatgcacactt 48444



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>emb|Z83244.1|CEW06F12 Caenorhabditis elegans Cosmid W06F12, complete sequence
          Length = 29520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    tacatggctgaaaaaacaaa 118
             ||||||||||||||||||||
Sbjct: 13448 tacatggctgaaaaaacaaa 13467



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>ref|XM_759885.1| Theileria parva strain Muguga hypothetical protein (TP02_0412)
            partial mRNA
          Length = 1923

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  tcatcctcatccaaattagt 396
            ||||||||||||||||||||
Sbjct: 1070 tcatcctcatccaaattagt 1051



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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    tgtgcaataaaactgtttgc 152
              ||||||||||||||||||||
Sbjct: 125079 tgtgcaataaaactgtttgc 125098



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>gb|AC098976.2| Homo sapiens BAC clone RP11-751L19 from 4, complete sequence
          Length = 165221

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     atcatcatagtgaacataca 89
              ||||||||||||||||||||
Sbjct: 109464 atcatcatagtgaacataca 109483



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>dbj|AK162653.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830144B01 product:unclassifiable, full
            insert sequence
          Length = 4247

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 445  tacagctcgctctgagcaag 464
            ||||||||||||||||||||
Sbjct: 3431 tacagctcgctctgagcaag 3412



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>gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence
          Length = 153198

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tttcaattcaggagcatata 224
             ||||||||||||||||||||
Sbjct: 19818 tttcaattcaggagcatata 19799



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>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence
          Length = 169812

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    aaacaaatcaatgcacactt 131
              ||||||||||||||||||||
Sbjct: 144880 aaacaaatcaatgcacactt 144899



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>dbj|AK041884.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630043P06 product:unclassifiable, full
           insert sequence
          Length = 2345

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 tacagctcgctctgagcaag 464
           ||||||||||||||||||||
Sbjct: 105 tacagctcgctctgagcaag 86



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>dbj|AK174776.1| Ciona intestinalis cDNA, clone:cilv016i18, full insert sequence
          Length = 984

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 tgatttcaggtacacaacaa 434
           ||||||||||||||||||||
Sbjct: 366 tgatttcaggtacacaacaa 347



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>dbj|BS000200.1| Pan troglodytes chromosome 22 clone:PTB-035B21, map 22, partial
             sequences, complete sequence
          Length = 31919

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   acagccatgcagcattttct 308
             ||||||||||||||||||||
Sbjct: 17315 acagccatgcagcattttct 17334



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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    caaactgccatcggccaaca 371
              ||||||||||||||||||||
Sbjct: 152440 caaactgccatcggccaaca 152421



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>gb|AC093471.8| Mus musculus chromosome 3, clone RP23-29M11, complete sequence
          Length = 193703

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 575    tctttgcctacacagacttggaat 598
              |||||||| |||||||||||||||
Sbjct: 176213 tctttgcccacacagacttggaat 176190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,324,964
Number of Sequences: 3902068
Number of extensions: 6324964
Number of successful extensions: 176576
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176352
Number of HSP's gapped (non-prelim): 224
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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