| Clone Name | rbags13a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059945.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G09, full insert sequence Length = 1028 Score = 113 bits (57), Expect = 8e-22 Identities = 200/247 (80%), Gaps = 3/247 (1%) Strand = Plus / Minus Query: 392 tgatggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgctttgga 451 |||||||||||||| ||||| ||| | || | ||| || |||||| ||||||| ||||| Sbjct: 447 tgatggtagccacgccctcgccctctgccaccacgtccacgacctctgccacgtcttgga 388 Query: 452 ccttgtttgtcactgttgttctcatcaaacaggtgctctggcaatacatctgacagtcga 511 |||| || ||| || | |||||||||| ||| |||||||| | |||||||| | || Sbjct: 387 ccttccttatcattggaactgtcatcaaacaagtgatctggcaacatatctgacaattga 328 Query: 512 aaagatccttcaagctgtctctcatttgattggtttgaaatggagacgtcatcctcctca 571 | | | |||| || || |||||||||||||||||||| ||||||| ||||||||| Sbjct: 327 gagggttcttcgagttgcttctcatttgattggtttgaagtggagac---atcctcctcg 271 Query: 572 ccatttccatcaccttcatgccctcccgttttcccttttactggacactttgtcatgcaa 631 |||||||||||| |||||||| ||||| |||||||||| ||| | ||||||||||||| Sbjct: 270 ccatttccatcagcttcatgcactccctttttccctttgcctgccccctttgtcatgcaa 211 Query: 632 gtattca 638 ||||||| Sbjct: 210 gtattca 204
>gb|AY596617.1| Saccharum officinarum clone SCCCLR1024G10, complete sequence Length = 2031 Score = 89.7 bits (45), Expect = 1e-14 Identities = 158/195 (81%), Gaps = 3/195 (1%) Strand = Plus / Minus Query: 469 gttctcatcaaacaggtgctctggcaatacatctgacagtcgaaaagatccttcaagctg 528 |||||||||||||| ||| || |||| ||||||| ||||| || | ||| |||||| ||| Sbjct: 1266 gttctcatcaaacaagtgttccggcagtacatctaacagttgagaggattcttcaaactg 1207 Query: 529 tctctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatcaccttc 588 | |||| ||||| ||||| ||| |||||| ||||||||||||||||||||||| ||| Sbjct: 1206 tttctcgtttgaatggttcgaagtggaga---catcctcctcaccatttccatcagtttc 1150 Query: 589 atgccctcccgttttcccttttactggacactttgtcatgcaagtattcagcagctgtaa 648 |||| | ||| |||| ||||| ||| | ||| | ||||||||||||||| | | | Sbjct: 1149 atgcacacccttttttcctttgcctgcccccttcaccgtgcaagtattcagcaaccgaac 1090 Query: 649 tctaagcccatttct 663 ||||||||||||||| Sbjct: 1089 tctaagcccatttct 1075 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 190 tggcttccccctacccatggtgaaaccacgagtgccatcaggcatacgtgggcc 243 |||||||||||| |||||||||||||| || |||||||||||||| || ||||| Sbjct: 1584 tggcttccccctgcccatggtgaaaccccgggtgccatcaggcatgcgggggcc 1531
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 1e-14 Identities = 71/79 (89%), Gaps = 3/79 (3%) Strand = Plus / Plus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatcaccttcat 590 |||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||| Sbjct: 6799678 tctcatttgattggtttgaagtggagac---atcctcctcgccatttccatcagcttcat 6799734 Query: 591 gccctcccgttttcccttt 609 || ||||| |||||||||| Sbjct: 6799735 gcactccctttttcccttt 6799753 Score = 40.1 bits (20), Expect = 9.1 Identities = 53/64 (82%) Strand = Plus / Plus Query: 392 tgatggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgctttgga 451 |||||||||||||| ||||| ||| | || | ||| || |||||| ||||||| ||||| Sbjct: 6799224 tgatggtagccacgccctcgccctctgccaccacgtccacgacctctgccacgtcttgga 6799283 Query: 452 cctt 455 |||| Sbjct: 6799284 cctt 6799287
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 1e-14 Identities = 71/79 (89%), Gaps = 3/79 (3%) Strand = Plus / Plus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatcaccttcat 590 |||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||| Sbjct: 6799557 tctcatttgattggtttgaagtggagac---atcctcctcgccatttccatcagcttcat 6799613 Query: 591 gccctcccgttttcccttt 609 || ||||| |||||||||| Sbjct: 6799614 gcactccctttttcccttt 6799632 Score = 40.1 bits (20), Expect = 9.1 Identities = 53/64 (82%) Strand = Plus / Plus Query: 392 tgatggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgctttgga 451 |||||||||||||| ||||| ||| | || | ||| || |||||| ||||||| ||||| Sbjct: 6799103 tgatggtagccacgccctcgccctctgccaccacgtccacgacctctgccacgtcttgga 6799162 Query: 452 cctt 455 |||| Sbjct: 6799163 cctt 6799166
>emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427_C06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 88558 Score = 89.7 bits (45), Expect = 1e-14 Identities = 71/79 (89%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatcaccttcat 590 |||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||| Sbjct: 18850 tctcatttgattggtttgaagtggagac---atcctcctcgccatttccatcagcttcat 18794 Query: 591 gccctcccgttttcccttt 609 || ||||| |||||||||| Sbjct: 18793 gcactccctttttcccttt 18775 Score = 40.1 bits (20), Expect = 9.1 Identities = 53/64 (82%) Strand = Plus / Minus Query: 392 tgatggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgctttgga 451 |||||||||||||| ||||| ||| | || | ||| || |||||| ||||||| ||||| Sbjct: 19304 tgatggtagccacgccctcgccctctgccaccacgtccacgacctctgccacgtcttgga 19245 Query: 452 cctt 455 |||| Sbjct: 19244 cctt 19241
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatca 583 |||||||||||||||| ||| ||||||| |||||||| |||||| ||||||| Sbjct: 58606 tctcatttgattggttagaagtggagacatcatcctctacaccatgtccatca 58554 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 395 tggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgc 445 ||||||||||| ||||||||| |||| | ||| || || |||||||||||| Sbjct: 59637 tggtagccacgccctcggcctctacctccacggccacggcctttgccacgc 59587
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map near S2137, complete sequence Length = 197516 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatca 583 |||||||||||||||| ||| ||||||| |||||||| |||||| ||||||| Sbjct: 20218 tctcatttgattggttagaagtggagacatcatcctctacaccatgtccatca 20270 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 395 tggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgc 445 ||||||||||| ||||||||| |||| | ||| || || |||||||||||| Sbjct: 19187 tggtagccacgccctcggcctctacctccacggccacggcctttgccacgc 19237
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatca 583 |||||||||||||||| ||| ||||||| |||||||| |||||| ||||||| Sbjct: 7939342 tctcatttgattggttagaagtggagacatcatcctctacaccatgtccatca 7939394 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 395 tggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgc 445 ||||||||||| ||||||||| |||| | ||| || || |||||||||||| Sbjct: 7938311 tggtagccacgccctcggcctctacctccacggccacggcctttgccacgc 7938361
>dbj|AK107293.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C01, full insert sequence Length = 1402 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatca 583 |||||||||||||||| ||| ||||||| |||||||| |||||| ||||||| Sbjct: 628 tctcatttgattggttagaagtggagacatcatcctctacaccatgtccatca 576 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 395 tggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgc 445 ||||||||||| ||||||||| |||| | ||| || || |||||||||||| Sbjct: 761 tggtagccacgccctcggcctctacctccacggccacggcctttgccacgc 711 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 619 ctttgtcatgcaagtattca 638 |||||||||||||||||||| Sbjct: 540 ctttgtcatgcaagtattca 521
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 531 tctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatca 583 |||||||||||||||| ||| ||||||| |||||||| |||||| ||||||| Sbjct: 8009429 tctcatttgattggttagaagtggagacatcatcctctacaccatgtccatca 8009481 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 395 tggtagccacggcctcggcctttaccgcaacgcccgcgacctttgccacgc 445 ||||||||||| ||||||||| |||| | ||| || || |||||||||||| Sbjct: 8008398 tggtagccacgccctcggcctctacctccacggccacggcctttgccacgc 8008448
>gb|AY104553.1| Zea mays PCO132517 mRNA sequence Length = 1585 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 190 tggcttccccctacccatggtgaaaccacgagtgccatcaggcatacgtgggcc 243 |||||||||||| ||| |||||||||| | |||||||||||||| || ||||| Sbjct: 1357 tggcttccccctgcccctggtgaaacccctggtgccatcaggcatgcgggggcc 1304 Score = 48.1 bits (24), Expect = 0.037 Identities = 92/114 (80%), Gaps = 3/114 (2%) Strand = Plus / Minus Query: 470 ttctcatcaaacaggtgctctggcaatacatctgacagtcgaaaagatccttcaagctgt 529 ||||||||||||| ||| || |||| ||||||| ||||| || | ||| ||||| |||| Sbjct: 1041 ttctcatcaaacaagtgttccggcagtacatctaacagttgagaggattgttcaaactgt 982 Query: 530 ctctcatttgattggtttgaaatggagacgtcatcctcctcaccatttccatca 583 |||| || || ||||| || |||||| |||||||||||| |||||||||| Sbjct: 981 ttctcgttagaatggttcaaagtggaga---catcctcctcactatttccatca 931 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 627 tgcaagtattcagcagctgtaatctaagcccatttct 663 ||||||||||||||| | | | ||||||||||||||| Sbjct: 887 tgcaagtattcagcaaccgaactctaagcccatttct 851
>gb|AC144932.6| Mus musculus BAC clone RP24-462H2 from chromosome 6, complete sequence Length = 140840 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Plus Query: 457 tttgtcactgttgttctcatcaaacagg 484 ||||||||||||||||||||||| |||| Sbjct: 45123 tttgtcactgttgttctcatcaagcagg 45150
>gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complete sequence Length = 156314 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Plus Query: 457 tttgtcactgttgttctcatcaaacagg 484 ||||||||||||||||||||||| |||| Sbjct: 147990 tttgtcactgttgttctcatcaagcagg 148017
>ref|XM_642170.1| Dictyostelium discoideum putative STE20 family protein kinase (DDB0216378), partial mRNA Length = 3429 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 tgatgatgattgttgttcaat 391 ||||||||||||||||||||| Sbjct: 1125 tgatgatgattgttgttcaat 1105
>ref|XM_636861.1| Dictyostelium discoideum hypothetical protein (DDB0206181), partial mRNA Length = 933 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 371 tgatgatgattgttgttcaattgatggta 399 ||||| ||||||||||||| ||||||||| Sbjct: 438 tgatggtgattgttgttcatttgatggta 410
>gb|AC005194.2| Homo sapiens chromosome 5, BAC clone 127L20 (LBNL H188), complete sequence Length = 107442 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 574 atttccatcaccttcatgccc 594 ||||||||||||||||||||| Sbjct: 79714 atttccatcaccttcatgccc 79694
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 ttgatggtagccacggcctcggcct 415 ||||||||||||| ||||||||||| Sbjct: 4040071 ttgatggtagccaaggcctcggcct 4040047
>gb|AC165278.4| Mus musculus chromosome 15, clone RP23-250O18, complete sequence Length = 187758 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 547 tgaaatggagacgtcatcctc 567 ||||||||||||||||||||| Sbjct: 53318 tgaaatggagacgtcatcctc 53338
>ref|XM_715368.1| Candida albicans SC5314 hypothetical protein (CaO19_2710), mRNA Length = 645 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 560 tcatcctcctcaccatttccatcaccttc 588 |||||| ||||||||||||||| |||||| Sbjct: 383 tcatccacctcaccatttccattaccttc 355
>ref|XM_715138.1| Candida albicans SC5314 hypothetical protein (CaO19_10225), mRNA Length = 645 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 560 tcatcctcctcaccatttccatcaccttc 588 |||||| ||||||||||||||| |||||| Sbjct: 383 tcatccacctcaccatttccattaccttc 355
>ref|XM_645002.1| Entamoeba histolytica HM-1:IMSS importin alpha re-exporter, putative (247.t00013) partial mRNA Length = 2670 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 attgttgttcaattgatggta 399 ||||||||||||||||||||| Sbjct: 1786 attgttgttcaattgatggta 1766
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 ttgatggtagccacggcctcggcct 415 ||||||||||||| ||||||||||| Sbjct: 230765 ttgatggtagccaaggcctcggcct 230741
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 ttgatggtagccacggcctcggcct 415 ||||||||||||| ||||||||||| Sbjct: 240182 ttgatggtagccaaggcctcggcct 240158
>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete sequence Length = 215657 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 cttcaagctgtctctcatttg 539 ||||||||||||||||||||| Sbjct: 31490 cttcaagctgtctctcatttg 31470
>gb|AC090744.5| Homo sapiens chromosome 11, clone RP11-660K15, complete sequence Length = 195434 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 512 aaagatccttcaagctgtctc 532 ||||||||||||||||||||| Sbjct: 21662 aaagatccttcaagctgtctc 21642
>gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, complete sequence Length = 238472 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 574 atttccatcaccttcatgccc 594 ||||||||||||||||||||| Sbjct: 219041 atttccatcaccttcatgccc 219021
>gb|AC068329.8| Homo sapiens chromosome 11, clone RP11-82N10, complete sequence Length = 185347 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 512 aaagatccttcaagctgtctc 532 ||||||||||||||||||||| Sbjct: 110566 aaagatccttcaagctgtctc 110586
>emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete sequence Length = 196812 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 547 tgaaatggagacgtcatcctc 567 ||||||||||||||||||||| Sbjct: 67271 tgaaatggagacgtcatcctc 67251
>gb|AC122563.8| Mus musculus chromosome 1, clone RP24-208F6, complete sequence Length = 180825 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 taccaaagcacacatccatgcaag 106 ||||||| |||||||||||||||| Sbjct: 176726 taccaaaacacacatccatgcaag 176703 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ctctggcaatacatctgaca 506 |||||||||||||||||||| Sbjct: 155573 ctctggcaatacatctgaca 155592
>gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, complete sequence Length = 227044 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 113305 tgtctctcatttgattggtt 113286
>gb|AY489196.1| Bassia hirsuta 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 719 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 caattgatggtagccacggcctcggcct 415 |||||| ||||||||| ||||||||||| Sbjct: 563 caattggtggtagccaaggcctcggcct 590
>ref|XM_635945.1| Dictyostelium discoideum hypothetical protein (DDB0204740), partial mRNA Length = 3765 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 tgtgatgatgattgttgttc 388 |||||||||||||||||||| Sbjct: 1889 tgtgatgatgattgttgttc 1870
>gb|AC161510.10| Mus musculus chromosome 5, clone RP23-7M16, complete sequence Length = 195579 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 2866 tgtctctcatttgattggtt 2847
>gb|AC123882.6| Mus musculus chromosome 1, clone RP23-447L15, complete sequence Length = 177559 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 taccaaagcacacatccatgcaag 106 ||||||| |||||||||||||||| Sbjct: 16847 taccaaaacacacatccatgcaag 16824
>gb|AC119266.14| Mus musculus chromosome 13, clone RP24-321G8, complete sequence Length = 174035 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aaagcacacatccatgcaag 106 |||||||||||||||||||| Sbjct: 2269 aaagcacacatccatgcaag 2250
>gb|AC160473.4| Mus musculus BAC clone RP23-123N21 from chromosome 12, complete sequence Length = 198634 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 57776 tgtctctcatttgattggtt 57757 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 44493 tgtctctcatttgattggtt 44512
>gb|AC122630.5| Rattus norvegicus 4 BAC CH230-131B2 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 211343 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tttgtcactgttgttctcat 476 |||||||||||||||||||| Sbjct: 74877 tttgtcactgttgttctcat 74896
>gb|AY641531.1| Bassia hirsuta internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 621 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 caattgatggtagccacggcctcggcct 415 |||||| ||||||||| ||||||||||| Sbjct: 518 caattggtggtagccaaggcctcggcct 545
>gb|AC140471.2| Mus musculus BAC clone RP24-400H5 from chromosome 19, complete sequence Length = 185153 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 119340 tgtctctcatttgattggtt 119359
>gb|AC119896.6| Mus musculus chromosome 10, clone RP24-226B10, complete sequence Length = 215123 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tgatgattgttgttcaattg 393 |||||||||||||||||||| Sbjct: 70608 tgatgattgttgttcaattg 70627
>gb|AC164562.4| Mus musculus BAC clone RP23-148G12 from chromosome 3, complete sequence Length = 202591 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 20974 tgtctctcatttgattggtt 20993
>gb|AC124186.3| Mus musculus BAC clone RP23-232B20 from chromosome 3, complete sequence Length = 195957 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 138821 tgtctctcatttgattggtt 138840
>gb|AC132437.3| Mus musculus BAC clone RP23-230M17 from chromosome 5, complete sequence Length = 176825 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 7875 tgtctctcatttgattggtt 7856
>gb|AC125115.3| Mus musculus BAC clone RP24-255F19 from chromosome 5, complete sequence Length = 170572 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 142282 tgtctctcatttgattggtt 142263
>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence Length = 181208 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 29751 tgtctctcatttgattggtt 29732
>gb|AC124176.3| Mus musculus BAC clone RP23-184D18 from 7, complete sequence Length = 180922 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 102852 tgtctctcatttgattggtt 102833
>gb|AC121579.3| Mus musculus BAC clone RP23-255H8 from 3, complete sequence Length = 184377 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 156758 tgtctctcatttgattggtt 156739
>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence Length = 208833 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 173258 tgtctctcatttgattggtt 173239
>gb|AC098890.3| Mus musculus BAC clone RP23-122P22 from X, complete sequence Length = 202740 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 72577 tgtctctcatttgattggtt 72558
>gb|AC153489.7| Mus musculus 10 BAC RP23-95A4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209653 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 100408 tgtctctcatttgattggtt 100427 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 97529 tgtctctcatttgattggtt 97548
>gb|U32378.1|BSU32378 Bacillus subtilis plasmid pTA1040, complete sequence Length = 7837 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 gtgaatgtgatgatgattgt 383 |||||||||||||||||||| Sbjct: 2278 gtgaatgtgatgatgattgt 2297
>gb|DQ121662.1| Bacteriophage JK06, complete genome Length = 46072 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ccaaaaataccaaagcacac 95 |||||||||||||||||||| Sbjct: 31121 ccaaaaataccaaagcacac 31140
>gb|AC102586.14| Mus musculus chromosome 3, clone RP23-327I19, complete sequence Length = 194959 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 100215 tgtctctcatttgattggtt 100196
>gb|U23449.2| Caenorhabditis elegans cosmid K06A1, complete sequence Length = 26449 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 tgtgatgatgattgttgttc 388 |||||||||||||||||||| Sbjct: 2122 tgtgatgatgattgttgttc 2103
>gb|AC091836.2| Homo sapiens chromosome 5 clone CTD-2060B6, complete sequence Length = 169695 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ttcagttttaagtataagag 48 |||||||||||||||||||| Sbjct: 80829 ttcagttttaagtataagag 80848
>gb|AC137711.21| Mus musculus chromosome 5, clone RP23-282A16, complete sequence Length = 181459 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 136029 tgtctctcatttgattggtt 136048
>gb|AC136742.15| Mus musculus chromosome 5, clone RP23-145H8, complete sequence Length = 197131 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 1179 tgtctctcatttgattggtt 1198
>ref|NM_062895.4| Caenorhabditis elegans K06A1.3 (K06A1.3) mRNA, complete cds Length = 1791 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 tgtgatgatgattgttgttc 388 |||||||||||||||||||| Sbjct: 1323 tgtgatgatgattgttgttc 1304
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gaatgtgatgatgattgttgttca 389 ||||||||| |||||||||||||| Sbjct: 22857307 gaatgtgataatgattgttgttca 22857330
>gb|AC160991.3| Mus musculus BAC clone RP23-187D8 from chromosome 13, complete sequence Length = 186863 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aaagcacacatccatgcaag 106 |||||||||||||||||||| Sbjct: 129523 aaagcacacatccatgcaag 129504
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gaatgtgatgatgattgttgttca 389 ||||||||| |||||||||||||| Sbjct: 32129 gaatgtgataatgattgttgttca 32152
>gb|AC155910.6| Mus musculus 10 BAC RP24-492P8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156641 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 24138 tgtctctcatttgattggtt 24157
>gb|AC153944.3| Mus musculus 10 BAC RP24-292A13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 139203 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 130993 tgtctctcatttgattggtt 131012
>gb|AC154404.3| Mus musculus BAC clone RP24-244M4 from 14, complete sequence Length = 190099 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 174744 tgtctctcatttgattggtt 174763
>gb|AY108148.1| Zea mays PCO133047 mRNA sequence Length = 1224 Score = 40.1 bits (20), Expect = 9.1 Identities = 56/68 (82%) Strand = Plus / Minus Query: 191 ggcttccccctacccatggtgaaaccacgagtgccatcaggcatacgtgggccaggaggc 250 |||||||| || |||||| |||| || || | |||||| ||||| || || || |||||| Sbjct: 817 ggcttccctctgcccatgctgaatccccgtgagccatccggcatgcgaggacctggaggc 758 Query: 251 tgtttgtt 258 |||||||| Sbjct: 757 tgtttgtt 750
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 637394 tgtctctcatttgattggtt 637375 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 347989 tgtctctcatttgattggtt 347970 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 334706 tgtctctcatttgattggtt 334725
>emb|CT486002.9| Mouse DNA sequence from clone RP23-396G8 on chromosome 17, complete sequence Length = 220042 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 144414 tgtctctcatttgattggtt 144433
>gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, complete sequence Length = 151529 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 15931 tgtctctcatttgattggtt 15912
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 catgcaagaaacaggtttgg 118 |||||||||||||||||||| Sbjct: 366606 catgcaagaaacaggtttgg 366625
>emb|CT025526.12| Mouse DNA sequence from clone RP23-218O15 on chromosome 9, complete sequence Length = 41330 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 5005 tgtctctcatttgattggtt 5024
>gb|AC163348.5| Mus musculus BAC clone RP23-230L2 from chromosome 12, complete sequence Length = 233932 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 50001 tgtctctcatttgattggtt 49982 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 36718 tgtctctcatttgattggtt 36737
>gb|AC164609.4| Mus musculus BAC clone RP24-350F17 from chromosome 12, complete sequence Length = 198167 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 91206 tgtctctcatttgattggtt 91187
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 67765 tgtctctcatttgattggtt 67746
>gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosome 3, complete sequence Length = 196971 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 126553 tgtctctcatttgattggtt 126572
>emb|AL773566.6| Mouse DNA sequence from clone RP23-181C9 on chromosome 2, complete sequence Length = 184254 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 111904 tgtctctcatttgattggtt 111923
>emb|AL669958.14| Mouse DNA sequence from clone RP23-213K6 on chromosome X, complete sequence Length = 195411 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tgtctctcatttgattggtt 546 |||||||||||||||||||| Sbjct: 139503 tgtctctcatttgattggtt 139484 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,078,311 Number of Sequences: 3902068 Number of extensions: 6078311 Number of successful extensions: 126704 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126187 Number of HSP's gapped (non-prelim): 511 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)