| Clone Name | rbags13a02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY065971.1| Triticum aestivum phosphoethanolamine methyltransferase mRNA, complete cds Length = 1782 Score = 595 bits (300), Expect = e-167 Identities = 370/390 (94%), Gaps = 5/390 (1%) Strand = Plus / Minus Query: 139 gcaccgatcctctttatttaattcttaaccgaagccgaagccgctctgcttccggatcat 198 |||||||||||||||||||| ||||||| | | ||||| |||||||||||||||||| Sbjct: 1635 gcaccgatcctctttattta-ttcttaat---aacagaagcggctctgcttccggatcat 1580 Query: 199 cgcgtagcgtggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 258 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 cgcgtc-cacggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 1521 Query: 259 cttctgctcgccggcggagctccgcttcagcttcgcgctccacccgttgacgatgtcgtc 318 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1520 cttctgctcgccggcagagctccgcttcagcttcgcgctccagccgttgacgatgtcgtc 1461 Query: 319 gtagtcctcctggctgaagtccgccaggaaggcctccttgttcttctcggtctcgcccag 378 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1460 gtagtcctcctgggtgaagtccgccaggaaggcctccttgttcttctcggtctcgcccag 1401 Query: 379 ctccctctccaggaccctcaggaactggtcggtgcggtcttcggcgatgacgtcgtggaa 438 ||||||||||||||||||||||||||||||||||||||| || |||| ||| || ||||| Sbjct: 1400 ctccctctccaggaccctcaggaactggtcggtgcggtcctcagcgacgacatcatggaa 1341 Query: 439 accggcatcctcaagcatctttccgtaggtcttcacatcatggaggtcatagcctctctg 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1340 accggcatcctcaagcatctttccgtaggtcttcacatcatggaggtcatagcctctctg 1281 Query: 499 cttgatgtacgcagcgaattcctctgatgg 528 |||||||||||||||||||||||||||||| Sbjct: 1280 cttgatgtacgcagcgaattcctctgatgg 1251 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/45 (93%), Gaps = 2/45 (4%) Strand = Plus / Minus Query: 32 acgtacgtacacatcat--tatcttacagatccgggtgcccggcc 74 |||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1691 acgtacgtacacattatcttatcttacagatccgggtgcccggcc 1647
>ref|XM_475841.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 256 bits (129), Expect = 6e-65 Identities = 252/293 (86%) Strand = Plus / Minus Query: 236 ttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagcttcgcg 295 ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| Sbjct: 1484 ttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagcttcgcg 1425 Query: 296 ctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgccaggaaggcctcc 355 |||| ||||| || ||||| ||||||||||||||| ||||||| |||| |||||| || Sbjct: 1424 ttccagccgttcacaatgtcatcgtagtcctcctgggtgaagtctgccatgaaggcttct 1365 Query: 356 ttgttcttctcggtctcgcccagctccctctccaggaccctcaggaactggtcggtgcgg 415 ||||||||||| || | |||||||| | || || | |||||||||||| |||||| Sbjct: 1364 ttgttcttctcaacttcagcaagctccctttgaagaacacgcaggaactggtccgtgcgg 1305 Query: 416 tcttcggcgatgacgtcgtggaaaccggcatcctcaagcatctttccgtaggtcttcaca 475 ||||| || ||||| | |||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 1304 tcttcagcaatgacatgatggaaaccagcatcctcaagcatctttccgtaagtcttcaca 1245 Query: 476 tcatggaggtcatagcctctctgcttgatgtacgcagcgaattcctctgatgg 528 || ||||||||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 1244 tcgtggaggtcatagcctctctgcttaatgtaagcagcaaattcttctgatgg 1192
>gb|AY103779.1| Zea mays PCO126548 mRNA sequence Length = 2333 Score = 182 bits (92), Expect = 8e-43 Identities = 251/304 (82%) Strand = Plus / Minus Query: 225 ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 284 ||||| |||||||||| || ||||||| ||||||| ||||||||||||| |||||||| | Sbjct: 1913 ggccaaatcacttggtggcaatgaacaacccccacctctgctcgccggcagagctccgtt 1854 Query: 285 tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgcca 344 ||||||||||| |||| || || || |||||||| |||||||||||| ||||||| |||| Sbjct: 1853 tcagcttcgcgttccagccattcacaatgtcgtcatagtcctcctgggtgaagtctgcca 1794 Query: 345 ggaaggcctccttgttcttctcggtctcgcccagctccctctccaggaccctcaggaact 404 |||| || || |||||||| || || || | |||||||| || || ||| ||||| Sbjct: 1793 ggaaagcgtctttgttcttttcaacttcacctatctccctctgtagaacattcaagaact 1734 Query: 405 ggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatctttccgt 464 | || ||||| ||||| |||||||| | || ||||| ||||||| ||||||| ||| | Sbjct: 1733 gctcagtgcgatcttccgcgatgacattatgaaaaccagcatccttcagcatctgtccat 1674 Query: 465 aggtcttcacatcatggaggtcatagcctctctgcttgatgtacgcagcgaattcctctg 524 | | |||||| || || |||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 1673 aagccttcacgtcgtgaaggtcatagcctctctgcttaatgtacgcagcaaattcttctg 1614 Query: 525 atgg 528 |||| Sbjct: 1613 atgg 1610
>gb|AY626156.3| Zea mays putative phosphoethanolamine N-methyltransferase (PEAMT) mRNA, complete cds Length = 1806 Score = 133 bits (67), Expect = 6e-28 Identities = 229/283 (80%) Strand = Plus / Minus Query: 225 ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 284 ||||| |||||||||| || ||||||| ||||||| ||||||| ||| | |||||||| | Sbjct: 1647 ggccaaatcacttggtggcaatgaacaacccccacctctgctcaccgccagagctccgtt 1588 Query: 285 tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgcca 344 ||||||||||| |||| ||||| || |||||||| |||||||||||| ||||||| |||| Sbjct: 1587 tcagcttcgcgttccagccgttcacaatgtcgtcatagtcctcctgggtgaagtctgcca 1528 Query: 345 ggaaggcctccttgttcttctcggtctcgcccagctccctctccaggaccctcaggaact 404 |||| || || |||||||| || || || | |||||||| || || ||| ||||| Sbjct: 1527 ggaaagcgtctttgttcttttcaacttcacctatctccctctgtagaacattcaagaact 1468 Query: 405 ggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatctttccgt 464 | || ||||| ||||| |||||||| | || ||||| ||||||| ||||||| ||| | Sbjct: 1467 gctcagtgcgatcttccgcgatgacattatgaaaaccagcatccttcagcatctgtccat 1408 Query: 465 aggtcttcacatcatggaggtcatagcctctctgcttgatgta 507 | | || ||| |||||||| ||||| || |||||||| ||||| Sbjct: 1407 aagcctccacgtcatggagatcataacccctctgcttaatgta 1365
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 290 |||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 14613 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 14672 Query: 291 tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 330 ||||| |||| ||||| || ||||| |||||||||||||| Sbjct: 14673 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 14712 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 457 ctttccgtaggtcttcacatcatggaggtcatagcctctctgcttgatgtacgcagcgaa 516 ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| || Sbjct: 15156 ctttccgtaagtcttcacatcgtggaggtcatagcctctctgcttaatgtaagcagcaaa 15215 Query: 517 ttcctctgatgg 528 ||| |||||||| Sbjct: 15216 ttcttctgatgg 15227 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 403 ctggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 458 |||||| ||||||||||| || ||||| | |||||||| |||||||||||||||| Sbjct: 14999 ctggtccgtgcggtcttcagcaatgacatgatggaaaccagcatcctcaagcatct 15054 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 327 cctggctgaagtccgccaggaaggcctccttgttcttctc 366 ||||| ||||||| |||| |||||| || ||||||||||| Sbjct: 14799 cctgggtgaagtctgccatgaaggcttctttgttcttctc 14838
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 290 |||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 40454 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 40513 Query: 291 tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 330 ||||| |||| ||||| || ||||| |||||||||||||| Sbjct: 40514 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 40553 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 457 ctttccgtaggtcttcacatcatggaggtcatagcctctctgcttgatgtacgcagcgaa 516 ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| || Sbjct: 40997 ctttccgtaagtcttcacatcgtggaggtcatagcctctctgcttaatgtaagcagcaaa 41056 Query: 517 ttcctctgatgg 528 ||| |||||||| Sbjct: 41057 ttcttctgatgg 41068 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 403 ctggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 458 |||||| ||||||||||| || ||||| | |||||||| |||||||||||||||| Sbjct: 40840 ctggtccgtgcggtcttcagcaatgacatgatggaaaccagcatcctcaagcatct 40895 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 327 cctggctgaagtccgccaggaaggcctccttgttcttctc 366 ||||| ||||||| |||| |||||| || ||||||||||| Sbjct: 40640 cctgggtgaagtctgccatgaaggcttctttgttcttctc 40679
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 290 |||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 27008031 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 27008090 Query: 291 tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 330 ||||| |||| ||||| || ||||| |||||||||||||| Sbjct: 27008091 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 27008130 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 457 ctttccgtaggtcttcacatcatggaggtcatagcctctctgcttgatgtacgcagcgaa 516 ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| || Sbjct: 27008574 ctttccgtaagtcttcacatcgtggaggtcatagcctctctgcttaatgtaagcagcaaa 27008633 Query: 517 ttcctctgatgg 528 ||| |||||||| Sbjct: 27008634 ttcttctgatgg 27008645 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 403 ctggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 458 |||||| ||||||||||| || ||||| | |||||||| |||||||||||||||| Sbjct: 27008417 ctggtccgtgcggtcttcagcaatgacatgatggaaaccagcatcctcaagcatct 27008472 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 327 cctggctgaagtccgccaggaaggcctccttgttcttctc 366 ||||| ||||||| |||| |||||| || ||||||||||| Sbjct: 27008217 cctgggtgaagtctgccatgaaggcttctttgttcttctc 27008256
>ref|NM_192178.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1500 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 398 aggaactggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatc 457 |||||||| |||||||||||||| || ||||| || |||||||| |||| |||||||||| Sbjct: 1334 aggaactgatcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatc 1275 Query: 458 tttccgta 465 | |||||| Sbjct: 1274 tgtccgta 1267 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/105 (82%) Strand = Plus / Minus Query: 232 tcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagctt 291 |||||||||||||||||||||||||||| ||||||| || || || |||| | || || Sbjct: 1500 tcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagttt 1441 Query: 292 cgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 336 || |||| || || || ||| |||||||||||||||||||||| Sbjct: 1440 tgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1396
>gb|AY551100.1| Oryza sativa (indica cultivar-group) phosphoethanolamine N-methyltransferase (PEAMT) mRNA, complete cds Length = 1986 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 398 aggaactggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatc 457 |||||||| |||||||||||||| || ||||| || |||||||| |||| |||||||||| Sbjct: 1532 aggaactgatcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatc 1473 Query: 458 tttccgta 465 | |||||| Sbjct: 1472 tgtccgta 1465 Score = 67.9 bits (34), Expect = 3e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 290 ||||||||||||||||||||||||||||| ||||||| || || || |||| | || | Sbjct: 1699 atcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagtt 1640 Query: 291 tcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 336 | || |||| || || || ||| |||||||||||||||||||||| Sbjct: 1639 ttgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1594
>dbj|AK069137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008P07, full insert sequence Length = 2069 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 398 aggaactggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatc 457 |||||||| |||||||||||||| || ||||| || |||||||| |||| |||||||||| Sbjct: 1617 aggaactgatcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatc 1558 Query: 458 tttccgta 465 | |||||| Sbjct: 1557 tgtccgta 1550 Score = 67.9 bits (34), Expect = 3e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 290 ||||||||||||||||||||||||||||| ||||||| || || || |||| | || | Sbjct: 1784 atcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagtt 1725 Query: 291 tcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 336 | || |||| || || || ||| |||||||||||||||||||||| Sbjct: 1724 ttgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1679
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctc 267 ||||||||||||||||||||||||||||| ||||||| Sbjct: 28737732 atcacttggtcgcgatgaacagcccccacctctgctc 28737696 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 407 tcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 458 |||||||||||||| || ||||| || |||||||| |||| ||||||||||| Sbjct: 28737362 tcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatct 28737311
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctc 267 ||||||||||||||||||||||||||||| ||||||| Sbjct: 120806 atcacttggtcgcgatgaacagcccccacctctgctc 120770 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 407 tcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 458 |||||||||||||| || ||||| || |||||||| |||| ||||||||||| Sbjct: 120436 tcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatct 120385
>dbj|AK102037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081D06, full insert sequence Length = 3221 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 231 atcacttggtcgcgatgaacagcccccacttctgctc 267 ||||||||||||||||||||||||||||| ||||||| Sbjct: 2984 atcacttggtcgcgatgaacagcccccacctctgctc 2948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 407 tcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 458 |||||||||||||| || ||||| || |||||||| |||| ||||||||||| Sbjct: 2614 tcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatct 2563
>gb|AY105261.1| Zea mays PCO129777 mRNA sequence Length = 1012 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 472 cacatcatggaggtcatagcctctctgcttgatgtacgcagcgaattcctctgatgg 528 |||| |||| |||||||| ||||||||||| |||||||| || |||||||||||||| Sbjct: 871 cacagcatgtaggtcataacctctctgcttaatgtacgctgcaaattcctctgatgg 815
>dbj|AB196771.1| Atriplex nummularia AnPEAMT mRNA for phosphoethanolamine N-methyltransferase, complete cds Length = 1989 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 469 cttcacatcatggaggtcatagcctctctgcttgatgta 507 ||||||||||||||| ||||| || |||||||||||||| Sbjct: 1544 cttcacatcatggagatcatatcccctctgcttgatgta 1506
>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 157107 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 143 cgatcctctttatttaattcttaa 166 |||||||||||||||||||||||| Sbjct: 32346 cgatcctctttatttaattcttaa 32369
>dbj|AB090883.1| Aster tripolium mRNA for phosphoethanolamine N-methyltransferase, complete cds Length = 1870 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Minus Query: 473 acatcatggaggtcatagcctctctgcttgatgtac 508 ||||||||||| ||||| ||||| |||||||||||| Sbjct: 1428 acatcatggagatcatatcctctttgcttgatgtac 1393
>dbj|AB080186.1| Suaeda japonica PEAMT mRNA for phosphoethanolamine N-methyltransferase, complete cds Length = 1779 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 473 acatcatggaggtcatagcctctctgcttgatgtacgcagcgaattc 519 ||||||||||| ||||| || |||||||| ||||| || |||||||| Sbjct: 1355 acatcatggagatcatatcccctctgcttaatgtaagcggcgaattc 1309
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 gacgatgtcgtcgtagtcctcc 328 |||||||||||||||||||||| Sbjct: 1075622 gacgatgtcgtcgtagtcctcc 1075601
>emb|Z35641.2|CEC38H2 Caenorhabditis elegans Cosmid C38H2, complete sequence Length = 31950 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cacttctgctcgccggcggag 277 ||||||||||||||||||||| Sbjct: 15748 cacttctgctcgccggcggag 15768
>emb|AL953859.7| Zebrafish DNA sequence from clone DKEY-53P21, complete sequence Length = 203360 Score = 42.1 bits (21), Expect = 1.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 8 acaaagttcagggnaacacacagcacgtacgt 39 |||||||||| | |||||||||||||||||| Sbjct: 119 acaaagttcacgcaaacacacagcacgtacgt 150
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tgacgatgtcgtcgtagtcct 326 ||||||||||||||||||||| Sbjct: 377931 tgacgatgtcgtcgtagtcct 377951 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tgacgatgtcgtcgtagtcct 326 ||||||||||||||||||||| Sbjct: 320695 tgacgatgtcgtcgtagtcct 320715
>gb|AC008285.7| Drosophila melanogaster clone BACR31P16, complete sequence Length = 177084 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 gcttcagcttcgcgctccacccgt 305 |||||||||||||| ||||||||| Sbjct: 169464 gcttcagcttcgcgatccacccgt 169487
>ref|XM_589053.2| PREDICTED: Bos taurus similar to zinc finger, MYND domain containing 15 (LOC539735), mRNA Length = 2251 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gccaggaaggcctccttgtt 360 |||||||||||||||||||| Sbjct: 1085 gccaggaaggcctccttgtt 1066
>gb|AE007294.1| Sinorhizobium meliloti 1021 plasmid pSymA section 100 of 121 of the complete plasmid sequence Length = 9983 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cgaagccgaagccgctctgc 187 |||||||||||||||||||| Sbjct: 5324 cgaagccgaagccgctctgc 5305
>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete sequence Length = 181811 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gtagtcctcctggctgaagt 338 |||||||||||||||||||| Sbjct: 711 gtagtcctcctggctgaagt 730
>ref|XM_757246.1| Ustilago maydis 521 hypothetical protein (UM06192.1) partial mRNA Length = 3558 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ccaacacacggccacagcat 132 |||||||||||||||||||| Sbjct: 632 ccaacacacggccacagcat 651
>emb|Z81493.1|CEF01D5 Caenorhabditis elegans Cosmid F01D5, complete sequence Length = 36127 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tccttgttcttctcggtctc 372 |||||||||||||||||||| Sbjct: 13295 tccttgttcttctcggtctc 13276
>gb|AY223048.1| Schistosoma japonicum clone ZZD120 mRNA sequence Length = 1179 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gcagccactgcaacaacaaa 101 |||||||||||||||||||| Sbjct: 878 gcagccactgcaacaacaaa 897
>emb|AL953854.21| Human DNA sequence from clone RP11-211P14 on chromosome 9 Contains a pseudogene similar to part of a vomeronasal 2 family protein and a novel protein similar to contactin associated protein-like 3 (CNTNAP3), complete sequence Length = 157546 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 41424 tctttatttaattcttaacc 41405
>emb|BX664730.2| Human DNA sequence from clone RP11-118H15 on chromosome 9 Contains a novel gene, complete sequence Length = 171251 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 158902 tctttatttaattcttaacc 158883
>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight novel pseudogenes, two novel genes and three CpG islands, complete sequence Length = 181647 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 548 tctttatttaattcttaacc 567
>emb|AL954685.6| Human DNA sequence from clone RP11-237M21 on chromosome 9, complete sequence Length = 130124 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 70560 tctttatttaattcttaacc 70579
>emb|AL953883.5| Human DNA sequence from clone RP11-246P17 on chromosome 9, complete sequence Length = 102894 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 81891 tctttatttaattcttaacc 81872
>emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chromosome 9 Contains the 5' end of the GDA gene for guanine deaminase and a CpG island, complete sequence Length = 131933 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tcctctttatttaattctta 165 |||||||||||||||||||| Sbjct: 24338 tcctctttatttaattctta 24319
>emb|AL353791.7| Human DNA sequence from clone RP11-475B17 on chromosome 9 Contains the 3' end of novel protein similar to contactin associated protein-like 3 (CNTNAP3) and a pseudogene similar to part of vomeronasal 2 family, complete sequence Length = 208233 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 104698 tctttatttaattcttaacc 104717
>gb|AY319479.1| Brassica napus phosphoethanolamine N-methyltransferase mRNA, complete cds Length = 1750 Score = 40.1 bits (20), Expect = 7.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 473 acatcatggaggtcatagcctctctgcttgatgtac 508 ||||||||||| ||||| |||||||| || |||||| Sbjct: 1479 acatcatggagatcatatcctctctgtttaatgtac 1444
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgctgctcggcggccagatc 233 |||||||||||||||||||| Sbjct: 96941 cgctgctcggcggccagatc 96960
>gb|AC007995.23| Mus musculus, clone RP23-266E9, complete sequence Length = 204193 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gtagtcctcctggctgaagt 338 |||||||||||||||||||| Sbjct: 185351 gtagtcctcctggctgaagt 185370
>emb|AL683804.15| Mouse DNA sequence from clone RP23-17F2 on chromosome 1 Contains a SEC61 gamma subunit (Sec61g) pseudogene, a limb expression 1 homolog (chicken) (Lix1) pseudogene, a novel pseudogene, the 5' end of the gene for an ortholog of human Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 RAPH1 and a CpG island, complete sequence Length = 198631 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acatcattatcttacagatc 61 |||||||||||||||||||| Sbjct: 85216 acatcattatcttacagatc 85235
>gb|AC010571.8| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 169138 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cggcgatgacgtcgtggaaa 439 |||||||||||||||||||| Sbjct: 62502 cggcgatgacgtcgtggaaa 62521
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 tggcgtcgctgctcggcggc 227 |||||||||||||||||||| Sbjct: 1266679 tggcgtcgctgctcggcggc 1266698
>gb|DQ397605.2| Cenarchaeum symbiosum clone C09D08, complete sequence Length = 35950 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 acatcatggaggtcatagcc 492 |||||||||||||||||||| Sbjct: 20511 acatcatggaggtcatagcc 20492
>gb|DQ397566.1| Cenarchaeum symbiosum clone C06D08, complete sequence Length = 38715 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 acatcatggaggtcatagcc 492 |||||||||||||||||||| Sbjct: 15018 acatcatggaggtcatagcc 15037
>gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, complete sequence Length = 142656 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 atcctctttatttaattctt 164 |||||||||||||||||||| Sbjct: 125275 atcctctttatttaattctt 125294
>ref|NM_143309.1| Drosophila melanogaster CG13972-RA (CG13972), mRNA Length = 1347 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 gcttcagcttcgcgctccacccgt 305 |||||||||||||| ||||||||| Sbjct: 1094 gcttcagcttcgcgatccacccgt 1071
>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence Length = 154939 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 atcctctttatttaattctt 164 |||||||||||||||||||| Sbjct: 76263 atcctctttatttaattctt 76282
>ref|NM_064535.2| Caenorhabditis elegans F01D5.6 (F01D5.6) mRNA, complete cds Length = 1303 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tccttgttcttctcggtctc 372 |||||||||||||||||||| Sbjct: 1109 tccttgttcttctcggtctc 1090
>gb|AY194228.1| Enterobacter cloacae succinate dehydrogenase cytochrome b-556 subunit (sdhC), succinate dehydrogenase hydrophobic membrane anchor protein (sdhD), succinate dehydrogenase flavoprotein subunit (sdhA), and succinate dehydrogenase iron-sulfur protein (sdhB) genes, complete cds; and 2-oxoglutarate dehydrogenase E1 component (sucA) gene, partial cds Length = 6771 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 ccccacttctgctcgccggcggag 277 ||||||||||||||||||| |||| Sbjct: 6123 ccccacttctgctcgccggaggag 6100
>gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, region 98A-98B, BAC clone BACR15D01, complete sequence Length = 180499 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 gcttcagcttcgcgctccacccgt 305 |||||||||||||| ||||||||| Sbjct: 30801 gcttcagcttcgcgatccacccgt 30824
>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 109003 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ttccggatcatcgcgtagcgtggc 211 |||| ||||||||||||||||||| Sbjct: 92074 ttcctgatcatcgcgtagcgtggc 92051
>emb|BX545849.7| Mouse DNA sequence from clone RP23-232N16 on chromosome 4, complete sequence Length = 114104 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 gcaacaacaaatcacaccac 110 |||||||||||||||||||| Sbjct: 44262 gcaacaacaaatcacaccac 44243
>gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequence Length = 35159 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ccctctccaggaccctcagg 400 |||||||||||||||||||| Sbjct: 34562 ccctctccaggaccctcagg 34543
>gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99 of 118 of the complete sequence Length = 224910 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 gcttcagcttcgcgctccacccgt 305 |||||||||||||| ||||||||| Sbjct: 79987 gcttcagcttcgcgatccacccgt 80010
>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete sequence Length = 294272 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cggcgatgacgtcgtggaaa 439 |||||||||||||||||||| Sbjct: 130221 cggcgatgacgtcgtggaaa 130240
>dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-100N3, complete sequences Length = 159372 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 tcctctttatttaattctta 165 |||||||||||||||||||| Sbjct: 103987 tcctctttatttaattctta 104006
>emb|AL591855.11| Human DNA sequence from clone RP11-4C12 on chromosome 9, complete sequence Length = 153214 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tctttatttaattcttaacc 168 |||||||||||||||||||| Sbjct: 6785 tctttatttaattcttaacc 6804 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,181,138 Number of Sequences: 3902068 Number of extensions: 4181138 Number of successful extensions: 87439 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87145 Number of HSP's gapped (non-prelim): 292 length of query: 528 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 505 effective length of database: 17,143,297,704 effective search space: 8657365340520 effective search space used: 8657365340520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)