ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12l01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
2dbj|AK121495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 8e-37
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
5emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 121 3e-24
6gb|AY111788.1| Zea mays CL6935_1 mRNA sequence 101 3e-18
7gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, com... 44 0.54
8gb|AC132239.4| Mus musculus BAC clone RP24-534D4 from 13, comple... 44 0.54
9ref|XM_716434.1| Candida albicans SC5314 putative enoyl-CoA hydr... 42 2.1
10ref|XM_716163.1| Candida albicans SC5314 putative enoyl-CoA hydr... 42 2.1
11emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chr... 42 2.1
12emb|BX324185.6| Zebrafish DNA sequence from clone DKEY-125M8 in ... 42 2.1
13gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, comple... 42 2.1
14gb|AC078883.6| Homo sapiens BAC clone RP11-227L6 from 2, complet... 42 2.1
15gb|AC092618.2| Homo sapiens BAC clone RP11-221D24 from 2, comple... 42 2.1
16emb|AL935188.7| Zebrafish DNA sequence from clone CH211-243G6, c... 42 2.1
17emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on ch... 42 2.1
18ref|XM_630526.1| Dictyostelium discoideum hypothetical protein (... 40 8.4
19gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
20ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfami... 40 8.4
21emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on ch... 40 8.4
22gb|AC137702.18| Medicago truncatula clone mth2-7k10, complete se... 40 8.4
23gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete s... 40 8.4
24gb|AY368652.1| Homo sapiens multiple myeloma susceptibility tumo... 40 8.4
25emb|AL590482.11| Human DNA sequence from clone RP11-142J11 on ch... 40 8.4
26emb|AL353725.14| Human DNA sequence from clone RP11-218C11 on ch... 40 8.4
27emb|AL139085.13| Human DNA sequence from clone RP11-431O22 on ch... 40 8.4
28emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, stra... 40 8.4
29emb|AL645744.16| Mouse DNA sequence from clone RP23-148E7 on chr... 40 8.4
30emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chrom... 40 8.4
31gb|BC099041.1| Xenopus laevis cDNA clone MGC:115614 IMAGE:374652... 40 8.4
32gb|DQ354447.1| Isoodon obesulus breast and ovarian cancer suscep... 40 8.4
33gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map ... 40 8.4
34gb|AC152825.4| Mus musculus BAC clone RP24-135P4 from chromosome... 40 8.4
35gb|AC008962.9| Homo sapiens chromosome 19 clone CTD-2356P16, com... 40 8.4
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
37gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Can... 40 8.4
38emb|BX000991.8| Zebrafish DNA sequence from clone CH211-203L7 in... 40 8.4
39emb|BX663517.21| Zebrafish DNA sequence from clone CH211-145E12 ... 40 8.4
40emb|BX649312.6| Zebrafish DNA sequence from clone DKEY-170M15 in... 40 8.4
41gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
42emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 8.4
43gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 8.4
44emb|AL713964.8| Mouse DNA sequence from clone DN-28A3 on chromos... 40 8.4 
>dbj|AK065838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039J03, full
            insert sequence
          Length = 3101

 Score =  168 bits (85), Expect = 1e-38
 Identities = 195/232 (84%), Gaps = 6/232 (2%)
 Strand = Plus / Minus

                                                                        
Query: 360  cattcttcagaaattactttcgccaccaaatgtagatgggggatggactgcgtcatatgc 419
            ||||||||||||||| ||| | ||||||||||| |  || |||||  ||||| |||| ||
Sbjct: 2866 cattcttcagaaatttcttccaccaccaaatgttggaggaggatgagctgcgccataggc 2807

                                                                        
Query: 420  tggaaattcctgtggtgctggtgcacactgtggaacggaatgcatatttgcatgcccttc 479
            || | |||||||||||||      |||||| || || ||||| ||||| | |||||| | 
Sbjct: 2806 tgaatattcctgtggtgc------acactgaggcacagaatgaatattcgtatgcccctg 2753

                                                                        
Query: 480  aatctgacttgctgaaacaccagtagcaggatattcctggtagaagaaaggcctaccaat 539
            ||||||||||| ||||||||||| || |||| |  |||||||||||||||| ||||| ||
Sbjct: 2752 aatctgacttgttgaaacaccagcagaaggaaacccctggtagaagaaaggtctaccgat 2693

                                                                
Query: 540  agatgagtttgttgcaatatcttctgttgcaaaatactgattttgatttggt 591
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 2692 agatgagtttgttgccatatcttctgttgcaaaatattgattttgatttggt 2641
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>dbj|AK121495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001A07, full
            insert sequence
          Length = 3089

 Score =  163 bits (82), Expect = 8e-37
 Identities = 136/154 (88%)
 Strand = Plus / Minus

                                                                        
Query: 438  tggtgcacactgtggaacggaatgcatatttgcatgcccttcaatctgacttgctgaaac 497
            |||||||||||| || || ||||| ||||| | |||||| | ||||||||||| ||||||
Sbjct: 2794 tggtgcacactgaggcacagaatgaatattcgtatgcccctgaatctgacttgttgaaac 2735

                                                                        
Query: 498  accagtagcaggatattcctggtagaagaaaggcctaccaatagatgagtttgttgcaat 557
            ||||| || |||| |  |||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 2734 accagcagaaggaaacccctggtagaagaaaggtctaccgatagatgagtttgttgccat 2675

                                              
Query: 558  atcttctgttgcaaaatactgattttgatttggt 591
            |||||||||||||||||| |||||||||||||||
Sbjct: 2674 atcttctgttgcaaaatattgattttgatttggt 2641
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                           
Query: 515     cctggtagaagaaaggcctaccaatagatgagtttgttgcaatatcttctgttgcaaaat 574
               |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 3061696 cctggtagaagaaaggtctaccgatagatgagtttgttgccatatcttctgttgcaaaat 3061637

                                
Query: 575     actgattttgatttggt 591
               | |||||||||||||||
Sbjct: 3061636 attgattttgatttggt 3061620



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 438     tggtgcacactgtggaacggaatgcatatttgcatgcccttcaatctgacttgctgaaac 497
               |||||||||||| || || ||||| ||||| | |||||| | ||||||||||| ||||||
Sbjct: 3061870 tggtgcacactgaggcacagaatgaatattcgtatgcccctgaatctgacttgttgaaac 3061811

                    
Query: 498     accag 502
               |||||
Sbjct: 3061810 accag 3061806



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 360     cattcttcagaaattactttcgccaccaaatgt 392
               ||||||||||||||| ||| | |||||||||||
Sbjct: 3062520 cattcttcagaaatttcttccaccaccaaatgt 3062488
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                           
Query: 515     cctggtagaagaaaggcctaccaatagatgagtttgttgcaatatcttctgttgcaaaat 574
               |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 3061641 cctggtagaagaaaggtctaccgatagatgagtttgttgccatatcttctgttgcaaaat 3061582

                                
Query: 575     actgattttgatttggt 591
               | |||||||||||||||
Sbjct: 3061581 attgattttgatttggt 3061565



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 438     tggtgcacactgtggaacggaatgcatatttgcatgcccttcaatctgacttgctgaaac 497
               |||||||||||| || || ||||| ||||| | |||||| | ||||||||||| ||||||
Sbjct: 3061815 tggtgcacactgaggcacagaatgaatattcgtatgcccctgaatctgacttgttgaaac 3061756

                    
Query: 498     accag 502
               |||||
Sbjct: 3061755 accag 3061751



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 360     cattcttcagaaattactttcgccaccaaatgt 392
               ||||||||||||||| ||| | |||||||||||
Sbjct: 3062465 cattcttcagaaatttcttccaccaccaaatgt 3062433
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159711

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                         
Query: 515   cctggtagaagaaaggcctaccaatagatgagtttgttgcaatatcttctgttgcaaaat 574
             |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 93147 cctggtagaagaaaggtctaccgatagatgagtttgttgccatatcttctgttgcaaaat 93206

                              
Query: 575   actgattttgatttggt 591
             | |||||||||||||||
Sbjct: 93207 attgattttgatttggt 93223



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 438   tggtgcacactgtggaacggaatgcatatttgcatgcccttcaatctgacttgctgaaac 497
             |||||||||||| || || ||||| ||||| | |||||| | ||||||||||| ||||||
Sbjct: 92973 tggtgcacactgaggcacagaatgaatattcgtatgcccctgaatctgacttgttgaaac 93032

                  
Query: 498   accag 502
             |||||
Sbjct: 93033 accag 93037



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 360   cattcttcagaaattactttcgccaccaaatgt 392
             ||||||||||||||| ||| | |||||||||||
Sbjct: 92323 cattcttcagaaatttcttccaccaccaaatgt 92355
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>gb|AY111788.1| Zea mays CL6935_1 mRNA sequence
          Length = 617

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                       
Query: 457 gaatgcatatttgcatgcccttcaatctgacttgctgaaacaccagtagcaggatattcc 516
           ||||||||||| | |||||| | |||||| |||| ||||||| ||||    |||||| ||
Sbjct: 296 gaatgcatattagtatgcccctgaatctggcttgttgaaacaacagtcatgggatatccc 237

                                                                       
Query: 517 tggtagaagaaaggcctaccaatagatgagtttgttgcaatatcttctgttgcaaaatac 576
           |||||||||||||| ||||||| ||||  ||||| ||||||||||||||  |||||||| 
Sbjct: 236 tggtagaagaaaggtctaccaacagattggtttgatgcaatatcttctgcagcaaaatat 177

                          
Query: 577 tgattttgatttggt 591
           |||| ||||||||||
Sbjct: 176 tgatcttgatttggt 162
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>gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, complete sequence
          Length = 108074

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 353   atattagcattcttcagaaattactt 378
             ||||| ||||||||||||||||||||
Sbjct: 36827 atatttgcattcttcagaaattactt 36802
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>gb|AC132239.4| Mus musculus BAC clone RP24-534D4 from 13, complete sequence
          Length = 163009

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 521    agaagaaaggcctaccaataga 542
              ||||||||||||||||||||||
Sbjct: 111840 agaagaaaggcctaccaataga 111819
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>ref|XM_716434.1| Candida albicans SC5314 putative enoyl-CoA hydratase/isomerase
           (CaO19_3029), mRNA
          Length = 1509

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 548 ttgttgcaatatcttctgttg 568
           |||||||||||||||||||||
Sbjct: 856 ttgttgcaatatcttctgttg 836
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>ref|XM_716163.1| Candida albicans SC5314 putative enoyl-CoA hydratase/isomerase
           (CaO19_10547), mRNA
          Length = 1509

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 548 ttgttgcaatatcttctgttg 568
           |||||||||||||||||||||
Sbjct: 856 ttgttgcaatatcttctgttg 836
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>emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chromosome 4, complete
             sequence
          Length = 184057

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    aattttgtcacagttcttgaa 114
             |||||||||||||||||||||
Sbjct: 32962 aattttgtcacagttcttgaa 32982
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>emb|BX324185.6| Zebrafish DNA sequence from clone DKEY-125M8 in linkage group 7,
            complete sequence
          Length = 83928

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   attttgtcacagttcttgaac 115
            |||||||||||||||||||||
Sbjct: 3229 attttgtcacagttcttgaac 3209
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>gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, complete sequence
          Length = 181942

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    tgttctttgaatgactatttt 286
              |||||||||||||||||||||
Sbjct: 155559 tgttctttgaatgactatttt 155539
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>gb|AC078883.6| Homo sapiens BAC clone RP11-227L6 from 2, complete sequence
          Length = 169586

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 264   catgttctttgaatgactattttacatgc 292
             ||||||||||||||||| |||| ||||||
Sbjct: 31521 catgttctttgaatgacaatttcacatgc 31493
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>gb|AC092618.2| Homo sapiens BAC clone RP11-221D24 from 2, complete sequence
          Length = 98060

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 326   aatcagttaatgaaatatgaa 346
             |||||||||||||||||||||
Sbjct: 86297 aatcagttaatgaaatatgaa 86277
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>emb|AL935188.7| Zebrafish DNA sequence from clone CH211-243G6, complete sequence
          Length = 160946

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 334   aatgaaatatgaacttctgat 354
             |||||||||||||||||||||
Sbjct: 62755 aatgaaatatgaacttctgat 62775
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>emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on chromosome 2, complete
             sequence
          Length = 181419

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 506   caggatattcctggtagaagaaagg 530
             |||||||||| ||||||||||||||
Sbjct: 42614 caggatattcatggtagaagaaagg 42638
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>ref|XM_630526.1| Dictyostelium discoideum hypothetical protein (DDB0188922), partial
            mRNA
          Length = 2235

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  acaacaatcagttaatgaaa 340
            ||||||||||||||||||||
Sbjct: 1554 acaacaatcagttaatgaaa 1573
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>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0059C14, complete sequence
          Length = 142138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   taaatagaaaaaataatgtt 139
             ||||||||||||||||||||
Sbjct: 69287 taaatagaaaaaataatgtt 69268
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>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome
              19
          Length = 413528

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 561    ttctgttgcaaaatactgattttg 584
              |||||||| |||||||||||||||
Sbjct: 235046 ttctgttgaaaaatactgattttg 235023
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>emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on chromosome 1, complete
              sequence
          Length = 250586

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    gcagtttaggattcaacaca 310
              ||||||||||||||||||||
Sbjct: 102841 gcagtttaggattcaacaca 102860
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>gb|AC137702.18| Medicago truncatula clone mth2-7k10, complete sequence
          Length = 94750

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 115   ccacttaaatagaaaaaataatgt 138
             |||||||| |||||||||||||||
Sbjct: 58262 ccacttaattagaaaaaataatgt 58239
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>gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete sequence
          Length = 144306

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 565    gttgcaaaatactgattttg 584
              ||||||||||||||||||||
Sbjct: 119552 gttgcaaaatactgattttg 119571
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>gb|AY368652.1| Homo sapiens multiple myeloma susceptibility tumor suppressor
           protein mRNA, complete cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 catacaacaatcagttaatg 337
           ||||||||||||||||||||
Sbjct: 991 catacaacaatcagttaatg 972
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>emb|AL590482.11| Human DNA sequence from clone RP11-142J11 on chromosome 6 Contains the
             3' end of a gene for a novel protein, complete sequence
          Length = 97255

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   atggtttcttctccatgttc 270
             ||||||||||||||||||||
Sbjct: 74571 atggtttcttctccatgttc 74590
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>emb|AL353725.14| Human DNA sequence from clone RP11-218C11 on chromosome 10, complete
             sequence
          Length = 61524

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 283   ttttacatgcagtttaggattcaa 306
             |||||||||||||||||| |||||
Sbjct: 46439 ttttacatgcagtttagggttcaa 46416
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>emb|AL139085.13| Human DNA sequence from clone RP11-431O22 on chromosome 13 Contains the
             5' end of the gene for chondromodulin I precursor (CHM-I),
             a novel gene, the PCDH8 gene for protocadherin 8 and 4 CpG
             islands, complete sequence
          Length = 173292

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   catacaacaatcagttaatg 337
             ||||||||||||||||||||
Sbjct: 22030 catacaacaatcagttaatg 22049
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>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    atagaaaaaataatgttccc 142
              ||||||||||||||||||||
Sbjct: 347169 atagaaaaaataatgttccc 347188
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>emb|AL645744.16| Mouse DNA sequence from clone RP23-148E7 on chromosome 1 Contains the
             Icos gene for inducible T-cell co-stimulator, complete
             sequence
          Length = 108015

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gcagtttaggattcaacaca 310
             ||||||||||||||||||||
Sbjct: 51853 gcagtttaggattcaacaca 51834
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>emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chromosome 1 Contains a
            ribosomal protein L17 (RPL17) pseudogene and a tigger
            transposable element derived 1 (TIGD1) pseudogene,
            complete sequence
          Length = 129519

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  gcagtttaggattcaacaca 310
            ||||||||||||||||||||
Sbjct: 4975 gcagtttaggattcaacaca 4956
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>gb|BC099041.1| Xenopus laevis cDNA clone MGC:115614 IMAGE:3746520, complete cds
          Length = 3774

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 ttctgttgcaaaatactgat 580
           ||||||||||||||||||||
Sbjct: 654 ttctgttgcaaaatactgat 635
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>gb|DQ354447.1| Isoodon obesulus breast and ovarian cancer susceptibility 1 (BRCA1)
            gene, partial cds
          Length = 2444

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 419  ctggaaattcctgtggtgct 438
            ||||||||||||||||||||
Sbjct: 1996 ctggaaattcctgtggtgct 1977
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>gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map 15q21.1, complete
             sequence
          Length = 176827

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 344   gaacttctgatattagcattcttcagaa 371
             ||||||||| ||||| ||||||||||||
Sbjct: 44743 gaacttctgttattaacattcttcagaa 44770
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>gb|AC152825.4| Mus musculus BAC clone RP24-135P4 from chromosome 9, complete sequence
          Length = 140471

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ttctgatattagcattcttc 367
             ||||||||||||||||||||
Sbjct: 69180 ttctgatattagcattcttc 69161
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>gb|AC008962.9| Homo sapiens chromosome 19 clone CTD-2356P16, complete sequence
          Length = 154169

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 561   ttctgttgcaaaatactgattttg 584
             |||||||| |||||||||||||||
Sbjct: 11302 ttctgttgaaaaatactgattttg 11279
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     taaatagaaaaaataatgtt 139
               ||||||||||||||||||||
Sbjct: 8770516 taaatagaaaaaataatgtt 8770497
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>gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196753

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    tagcaggatattcctggtag 522
              ||||||||||||||||||||
Sbjct: 192336 tagcaggatattcctggtag 192355
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>emb|BX000991.8| Zebrafish DNA sequence from clone CH211-203L7 in linkage group 6,
            complete sequence
          Length = 170966

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  taaatagaaaaaataatgtt 139
            ||||||||||||||||||||
Sbjct: 7172 taaatagaaaaaataatgtt 7191
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>emb|BX663517.21| Zebrafish DNA sequence from clone CH211-145E12 in linkage group 22,
             complete sequence
          Length = 83851

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   taaatagaaaaaataatgtt 139
             ||||||||||||||||||||
Sbjct: 60438 taaatagaaaaaataatgtt 60419
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>emb|BX649312.6| Zebrafish DNA sequence from clone DKEY-170M15 in linkage group 20,
              complete sequence
          Length = 162661

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    ctccatgttctttgaatgac 280
              ||||||||||||||||||||
Sbjct: 151593 ctccatgttctttgaatgac 151574
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     taaatagaaaaaataatgtt 139
               ||||||||||||||||||||
Sbjct: 8841279 taaatagaaaaaataatgtt 8841260
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
              sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 507    aggatattcctggtagaagaaagg 530
              ||||| ||||||||||||||||||
Sbjct: 196171 aggattttcctggtagaagaaagg 196148
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 559     tcttctgttgcaaaatactgattttgatttgg 590
               ||||||||||||||||||  ||||| ||||||
Sbjct: 1734847 tcttctgttgcaaaataccaattttcatttgg 1734878
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>emb|AL713964.8| Mouse DNA sequence from clone DN-28A3 on chromosome 1, complete
            sequence
          Length = 10721

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  gcagtttaggattcaacaca 310
            ||||||||||||||||||||
Sbjct: 5747 gcagtttaggattcaacaca 5766


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,812,421
Number of Sequences: 3902068
Number of extensions: 6812421
Number of successful extensions: 131032
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130725
Number of HSP's gapped (non-prelim): 306
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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