>KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag (Ether-a-go-go|
            protein)
          Length = 1174

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 19/122 (15%)
 Frame = +3

Query: 234  PPLQAEQRSAPGAAGRS------GDSSHLRRCPAYWRAQGSQSHPSRGFTEPDDGQDDGD 395
            P +QA  +   G +G+S      G+    +  P   + Q SQ+  +R  T  + G+ D  
Sbjct: 738  PQVQAGSKELVGGSGQSDVEKGDGEVERTKVFPKAPKLQASQATLARQDTIDEGGEVDSS 797

Query: 396  --------VLHSGGASDVACADAPVIPRRSLAARRL-----PGDSGVAFGVVTREGKGLL 536
                    V+     S      +P +   S AA        PG  G    +VT+  + L 
Sbjct: 798  PPSRDSRVVIEGAAVSSATVGPSPPVATTSSAAAGAGVSGGPGSGGTVVAIVTKADRNLA 857

Query: 537  LE 542
            LE
Sbjct: 858  LE 859

>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -3

Query: 530  PLPFPSDYPKCDPRVPRKPPSRQTPPRDDRSISAGNVRRATAVKDVAVVLAIVRLRKPPG 351
            PLPF   YP+ DP  P   P   +PP    + +A  +  A+A     + +A   L   PG
Sbjct: 871  PLPFSPSYPQ-DPLSPTSLPVCPSPPSLPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPG 929

Query: 350  WVRLAPLSTP 321
             +  +P + P
Sbjct: 930  LLSQSPPAPP 939

>FLGH_XANAC (Q8PL26) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 230

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
 Frame = +1

Query: 259 APLVPPVVPVTRATSGDAQPTGV---LRGASRTHP-GGLRSLTMARTTATSFTA---VAR 417
           AP+VP V PV + T+G     G    L G  R    G L ++ +  +T  S TA   +++
Sbjct: 36  APIVPVVAPVAQPTAGAIYAAGPGLNLYGDRRARDVGDLLTVNLVESTTASSTANTSISK 95

Query: 418 RTLPALMLRSSLGGVWRLGGFLGTRGSHLG*SLGKGRG 531
           +    +   + LG    +GG      S  G     G+G
Sbjct: 96  KDATTMAAPTLLGAPLTVGGLNVLENSTSGDRSFAGKG 133

>SOX9_MOUSE (Q04887) Transcription factor SOX-9|
          Length = 507

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 539 EQQPLPFPSDYPKCDPRVPRKPPSRQTPPRDDRS 438
           +QQ  P P   P   P+ P+ PP +Q PP+  ++
Sbjct: 338 KQQAPPPPPQQPPQAPQAPQAPPQQQAPPQQPQA 371

>MAPK2_HUMAN (P49137) MAP kinase-activated protein kinase 2 (EC 2.7.11.1)|
           (MAPK-activated protein kinase 2) (MAPKAP kinase 2)
           (MAPKAPK-2) (MK2)
          Length = 400

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 539 EQQPLPFPSDYPKCDPRVPRKP-PSRQTPPRDDRSISAGNVRRATAVKDVAVV 384
           +  P+PFP+  P   P  P  P P  Q PP   +     +V+    +K  A++
Sbjct: 8   QSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAII 60

>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD|
           protein)
          Length = 3110

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 539 EQQPLPFPSDYPKCDPRVPRKPPSRQTPP 453
           +QQP P P   P   P+ P+ PP  Q PP
Sbjct: 16  QQQPPPQPPPPPPPPPQPPQPPPQGQPPP 44

>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)|
          Length = 520

 Score = 26.6 bits (57), Expect(2) = 3.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 296 PPPAMPSLLACSGEPVAPIPGVYG 367
           PPP  P     SG P  P+PG  G
Sbjct: 384 PPPPPPPATGRSGPPPPPLPGAGG 407



 Score = 22.3 bits (46), Expect(2) = 3.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 256 GAPLVPPVVPVTRATSGDAQP 318
           G PL PPVV   +  SG   P
Sbjct: 341 GQPLRPPVVGSNKGRSGPLPP 361

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
 Frame = +3

Query: 273 AGRSGDSSHLRRCPAYWRAQGSQSHPSR-----GFTEPDDGQD--DGDVLHSGGASDVAC 431
           AG SG+   +R CP   R +G +    R     G+T  D G     GD    G   D  C
Sbjct: 454 AGYSGEDCGVRSCPGDCRGRG-RCESGRCMCWPGYTGRDCGTRACPGDCRGRGRCVDGRC 512

Query: 432 ADAPVIPRRSLAARRLPGD 488
              P        +RR PGD
Sbjct: 513 VCNPGFTGEDCGSRRCPGD 531

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 227 EEGEKGEREGPDRWAPTPPVGERG 156
           EEG++G R  P    P  PVGERG
Sbjct: 496 EEGKRGPRGDPGTLGPPGPVGERG 519

>KIN1_SCHPO (P22987) Protein kinase kin1 (EC 2.7.11.1)|
          Length = 891

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 291  SSHLRRCPAYWRAQGSQSHPSRGFTEPDDGQDDGDVLHSGGASDVACADAPVIPRRSLAA 470
            S H RR P+Y     + S+ S   T P D  D+G+   S  A ++     P++  R ++ 
Sbjct: 811  SVHTRRKPSYGSNSTTDSYGSVPDTVPLD--DNGESPASNLAFEIYIVKVPILSLRGVSF 868

Query: 471  RRLPGDS 491
             R+ G+S
Sbjct: 869  HRISGNS 875

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +1

Query: 256  GAPLVPPVVPVTRATSGDAQPTGVLRGASRTHPGGLRSLTMARTTATSFTAVARRTLPAL 435
            G P V         TS  A P+        + PG   +L   R+TAT+ TA +   +P+ 
Sbjct: 4418 GTPHVSTTATTPTVTSSKATPS--------SSPGTATALPALRSTATTPTATSFTAIPS- 4468

Query: 436  MLRSSLGGVW 465
               SSLG  W
Sbjct: 4469 ---SSLGTTW 4475



 Score = 29.6 bits (65), Expect = 5.7
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = +1

Query: 253  RGAPLVPPVVPVTRATSGDAQPTGVLRGASRTHPGGLRSLTMARTTATSFTAVARRTLPA 432
            R AP  PP V  T AT+     +     +S   PG   +L   R+TAT+ TA +   +P+
Sbjct: 2460 RTAP--PPKVLTTTATTPTVTSSKATPSSS---PGTATALPALRSTATTPTATSVTPIPS 2514

Query: 433  LMLRSSLGGVW 465
                SSLG  W
Sbjct: 2515 ----SSLGTTW 2521



 Score = 28.9 bits (63), Expect = 9.7
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
 Frame = +1

Query: 289  TRATSGDAQ--------PTGVL-RGASRTHPGGLRSLTMARTTATSFTAVARRTLPALML 441
            TRAT+G  +        PT +  R    + PG   +L   R+TAT+ TA +   +P+   
Sbjct: 3157 TRATAGTLKVLTSTATTPTVISSRATPSSSPGTATALPALRSTATTPTATSVTAIPS--- 3213

Query: 442  RSSLGGVW 465
             SSLG  W
Sbjct: 3214 -SSLGTAW 3220

>HIS4_XYLFA (Q9PBC9) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 265

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
 Frame = +1

Query: 256 GAPLVPPVVPVTRATSGDAQPTGVLR-----------GASRTHPGGLRSLTMARTTATSF 402
           G  L P +  +TRAT    Q  G +R           GA+R   G L     AR      
Sbjct: 61  GYTLAPLLRQMTRATGLQVQTGGGVRSRDDVARILDAGAARVVIGSLAVRESARVIEWLQ 120

Query: 403 TAVARRTLPALMLRSSLGGVWRL 471
                R   AL  R   GGVWRL
Sbjct: 121 AFGPERITVALDTRQDAGGVWRL 143

>NIN_MOUSE (Q61043) Ninein|
          Length = 2035

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 231 IPPLQAEQRSAPGAAGRSGDSSHLRRCPAYWRAQGSQSHPSRG---FTEPDD 377
           + PL+ E RS+P  AG  G+         +W+ Q S+ + + G   F  PDD
Sbjct: 126 LEPLEEEARSSPIPAGDCGE---------HWKTQRSEEYEAEGQLRFWNPDD 168

>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 737

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
 Frame = -3

Query: 539 EQQPLPFPSDYPKCDPRVPRKPPSRQTPPRDDRSISAGNVRRATAVKDV------AVVLA 378
           E +P P P   P+  P  P  PP+++   R     +     + TA+  V      A+   
Sbjct: 635 EPEPQPQPQPQPQPQPVAPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENI 694

Query: 377 IVRLRKPPG---------WVRLAPLSTPVGWASPE 300
           IV ++K P            + AP   P G  +PE
Sbjct: 695 IVEVKKEPDAEPAEGEEEEAQAAPADAPNGDLTPE 729

>FRS2_MOUSE (Q8C180) Fibroblast growth factor receptor substrate 2 (FGFR|
           substrate 2) (Suc1-associated neurotrophic factor target
           1) (SNT-1) (FGFR signalling adaptor SNT) (FRS2 alpha)
          Length = 507

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 372 QAP*TPGMGATGSPEHASRLGIAGGGSSHRNDRRHQGRSSALLATAG 232
           + P TPG+GA   P    R    G  SSH +  RH    SA L + G
Sbjct: 133 RTPTTPGLGAQNLPNGYPRYPSFGDASSHPSS-RHPSVGSARLPSVG 178

>NUP62_RAT (P17955) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)|
          Length = 525

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +1

Query: 256 GAPLVPPVVPVTRATSGDAQPTGVLRGASRTHPGGLRSLTMARTTATSFTAVARRTLPAL 435
           G+P  P  +  T  T+G  QP      A+ T  G     ++A   A+S T V   + PA 
Sbjct: 189 GSPFTPATLATT--TAGATQPAAATPTAATTSAGSTLFASIAAAPASSSTTVLSLSAPAT 246

Query: 436 MLRSSLGG 459
              +   G
Sbjct: 247 TAATPTAG 254

>KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1139

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 518 PSDYPKCDPRVPRKPPSRQTPPRDDRSISA 429
           P+DY   D   P +PP++Q PP+  +   A
Sbjct: 711 PADYANVDQGFPAQPPAQQRPPQPQQQQQA 740

>SYI_DESVH (Q72AR5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 298 WLESPERPAAPGALLCSACNGGMWKKE 218
           W E+      P  L C  C G  WKKE
Sbjct: 507 WYETDLSDIVPAGLRCPKCGGDHWKKE 533

>GRIK4_MOUSE (Q8BMF5) Glutamate receptor, ionotropic kainate 4 precursor|
          Length = 956

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 237  PLQAEQRSAPGAAGRSGDSSHLRRCPAYWRAQGSQSHPSRGFTE 368
            P Q  QR A  AA  +   +H+R CP   R QG ++ PS   +E
Sbjct: 898  PDQLAQRLAQEAALVARGCTHIRVCPECRRFQGLRARPSTARSE 941

>PANX2_HUMAN (Q96RD6) Pannexin-2|
          Length = 633

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 RGAPLVPPVVPVTRATSGDAQPTGVLRGASRTHP 354
           R  P  P V P+T A+ G A+P  +L   + THP
Sbjct: 582 RSPPAAPAVAPLTPASLGKAEPLTIL-SRNATHP 614

>ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4.21.-)|
           (Fragment)
          Length = 232

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 542 FEQQPLPFPSDYPKCDPRVPRKPPSRQTPP 453
           F+  P P P   P   PR P  PP    PP
Sbjct: 139 FQPPPRPLPPRPPAAQPRPPPSPPPPPPPP 168

>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -3

Query: 530  PLPFPSDYPKCDPRVPRKPPSRQTPPRDDRSISAGNVRRATAVKDVAVVLAIVRLRKPPG 351
            PLPF   YP+  P  P   P+  +PP    + +A  +  A+A     + +A   L   PG
Sbjct: 871  PLPFSPSYPQV-PLHPASLPTCPSPPPLPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPG 929

Query: 350  WVRLAPLSTP 321
             +  +P + P
Sbjct: 930  LLSQSPPAPP 939

>VL2_BPV4 (P08342) Minor capsid protein L2|
          Length = 357

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 271 PPVVPVTRATSGDAQPTGVLRGASRTHPGGLRSLTMARTTATSFTA-VARRTLPALMLRS 447
           PPV      T GD +   +L     THP      T ++    +FTA VA   LP     S
Sbjct: 144 PPVYEGPEVTIGDIEEPPILEVVPETHPTSRVRSTTSKHDNPAFTAYVASAQLPG--ETS 201

Query: 448 SLGGVWRLGGFLG 486
           +   V+ L GF G
Sbjct: 202 ASDNVYILHGFNG 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,898,399
Number of Sequences: 219361
Number of extensions: 1923580
Number of successful extensions: 8085
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8056
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)