ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12k06 |
|---|---|
| Clone Library Name | barley_pub |
>SYE_MYCPE (Q8EU94) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 487 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/84 (26%), Positives = 40/84 (47%) Frame = -1 Query: 460 FGGLDWISRTDFGNPSEMMGLRYKQYAITVDESSLTDHYPRDHKIFKDPISFHKRGFEFI 281 F ++WIS F S+ + + + IT+D L + +FK+ I++ K+ + I Sbjct: 321 FKKMEWISSEHFKMMSDSAFISFAKPFITIDLGFLKGNENDVILLFKNQIAYAKQINDLI 380 Query: 280 RRTFMDKQNVKLDCKRFRPVLLEA 209 TF + C++F P L +A Sbjct: 381 DETFFSPETFAAVCEKF-PFLKQA 403
>XYLT_ARATH (Q9LDH0) Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)| Length = 534 Score = 31.6 bits (70), Expect = 1.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 562 KLVNSVDVMMGVHGAGLTNCVFLPQNATLIQIV 464 + + V++G HGAGLT+ V N T+ +I+ Sbjct: 454 RAIQDASVIIGAHGAGLTHIVSATPNTTIFEII 486
>HIS7_HAEIN (P44327) Histidine biosynthesis bifunctional protein hisB| [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)] Length = 362 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = -1 Query: 454 GLDWISRTDFGNPSEMMGLRYKQYAITVDESSLTDHYPRDHKIFKDP 314 G D +TDF P +M ++ IT DE + H P ++ + + P Sbjct: 58 GTDAFPQTDFDKPHNVMMALFESQGITFDEVLICPHKPEENCLCRKP 104
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Frame = -3 Query: 380 HHRRREQPHRSLPEGP*DLQGPHLLP----QARVRVHQAHLHGQAEREARLQEVQTCTVG 213 HH + Q H + + L HLL Q V A H Q +++ + Q+ Q +G Sbjct: 1065 HHHQGHQSHHAQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQQAKLMG 1124 Query: 212 GTGQSKPVIL 183 G KP+ L Sbjct: 1125 GVVDMKPMFL 1134
>GPMI_STRCO (Q9L214) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 511 Score = 30.0 bits (66), Expect = 5.6 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 13/84 (15%) Frame = +2 Query: 362 ALVDGDGVLLVPQAHHLRRVAE-------------VGAGYPVQAAEGHDLDERGVLRQED 502 A+ DG V +L RVAE +G GY + A DL ER V D Sbjct: 154 AITDGRDVADHTGEAYLTRVAELAAAAGTGQIATVIGRGYAMDKAGDLDLTERAVALVAD 213 Query: 503 AVGEPGAMHAHHHVHRVDKLGEAV 574 G P A AH VH ++ E V Sbjct: 214 GRGSP-ADSAHSAVHSSERGDEWV 236
>XSC_ALCDF (Q84H44) Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)| Length = 597 Score = 30.0 bits (66), Expect = 5.6 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 607 VIDEANVSSDINGFAKLVNSVDVMMGVHGAGLTNCV 500 V+ E + +GFA++ V++G +G G++NCV Sbjct: 57 VVHEQGAAHMADGFARVSGRTGVVIGQNGPGISNCV 92
>SMY1_YEAST (P32364) Kinesin-related protein SMY1 (Suppressor protein SMY1)| Length = 656 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -3 Query: 269 HGQAEREARLQEVQTCTVGGTGQSKPVILRFMYNLP 162 H A RE++L EV ++GG ++K ++ F+ N+P Sbjct: 314 HSSAYRESQLTEVLKDSLGGNRKTKVILTCFLSNVP 349
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Frame = -1 Query: 466 VPFGGLD--WISRTDFGN----PSEMMGLRYKQYAITVDESSLTDHYPR-----DHKIFK 320 +P GG+D W S D G+ P ++ L + + SL +H+ + D + + Sbjct: 1 MPRGGMDDHWPSSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMR 60 Query: 319 DPISFHKRGFEFIRRTFMDKQNVKLDCK 236 DP + RGF F+ + +++ + + + Sbjct: 61 DPQTKRSRGFGFVTYSCVEEVDASMSAR 88
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Frame = -1 Query: 466 VPFGGLD--WISRTDFGN----PSEMMGLRYKQYAITVDESSLTDHYPR-----DHKIFK 320 +P GG+D W S D G+ P ++ L + + SL +H+ + D + + Sbjct: 1 MPRGGMDDHWPSSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMR 60 Query: 319 DPISFHKRGFEFIRRTFMDKQNVKLDCK 236 DP + RGF F+ + +++ + + + Sbjct: 61 DPQTKRSRGFGFVTYSCVEEVDASMSAR 88
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -3 Query: 335 P*DLQGPHLLPQARVRVHQAHLHGQAEREARLQEVQ 228 P LQG HL QA RVHQ H Q +++ + Q Q Sbjct: 1080 PPHLQGTHLNAQAMQRVHQHKQHQQHQQQHQQQHQQ 1115
>ATL4O_ARATH (Q8W571) RING-H2 finger protein ATL4O precursor| Length = 322 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +2 Query: 323 EDLMVPRVVIGEAALVDGDGVLLVPQAHHLRRVAEVGAGYPVQAAEGHDLD------ERG 484 ED VP + + +VD + V V ++HH R +E+ +P + GH +D ER Sbjct: 178 EDDGVPLAAMRDHVVVDIETVE-VAKSHHRRLSSEISGKFPRSNSTGHSMDRFSDGTERF 236 Query: 485 VLRQEDAV 508 LR D V Sbjct: 237 TLRLPDDV 244
>ADD1_STRCO (O86737) Probable adenosine deaminase 1 (EC 3.5.4.4) (Adenosine| aminohydrolase 1) Length = 387 Score = 29.6 bits (65), Expect = 7.2 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 455 RPGLDIPHRLRQPVGDDGPAVQAVRHHRRREQP---HRSLPEGP*DLQGPHL-LPQARVR 288 RP D P QP+ P +A R R E+P H P+ P DL LP+A + Sbjct: 2 RPAYDDPRTTDQPITRARPPPRAARGRRLGEEPLTEHLVDPDVPRDLHAFIAGLPKAELH 61 Query: 287 VH 282 VH Sbjct: 62 VH 63
>YIA2_RHISP (P17984) Insertion element ISR1 hypothetical 17 kDa protein A2| Length = 161 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 425 RQPVGDDGPAVQAVRHHRRREQPHRSLPEGP 333 R VG PA +A RHHR+R++ L GP Sbjct: 16 RAGVGRRHPAARAARHHRQRQRHGVHLERGP 46
>GLMS_ECOLI (P17169) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 608 Score = 29.6 bits (65), Expect = 7.2 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = +2 Query: 371 DGDGVLLVPQAHHLRRVAEVGAGYPV-QAAEGHDLDE-RGVLRQEDAV-GEPGAMHAHHH 541 D G+ +V H+ R+ +G + QAAE H L G+ A GEP ++AH H Sbjct: 29 DSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88 Query: 542 VHRVDKLGEAVDVGAHVGLVDHH 610 V E + V H G++++H Sbjct: 89 V------SEHI-VVVHNGIIENH 104
>GLMS_ECO57 (Q8XEG2) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 608 Score = 29.6 bits (65), Expect = 7.2 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = +2 Query: 371 DGDGVLLVPQAHHLRRVAEVGAGYPV-QAAEGHDLDE-RGVLRQEDAV-GEPGAMHAHHH 541 D G+ +V H+ R+ +G + QAAE H L G+ A GEP ++AH H Sbjct: 29 DSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88 Query: 542 VHRVDKLGEAVDVGAHVGLVDHH 610 V E + V H G++++H Sbjct: 89 V------SEHI-VVVHNGIIENH 104
>SYFA_METKA (Q8TYM5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 524 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = +2 Query: 410 LRRVAEVGAGYPVQAAEGHDLDERGVLRQEDAVGEPGAMHAHHHVHRVDKLGEAVDVGAH 589 L +AE G P + AE D+D V+R + E G + + H V +LG+ A Sbjct: 18 LIHLAESGEATPEELAESLDVDLGPVMRSLYWLEERGLIESEEETHEVYELGDEGKEYAE 77 Query: 590 VGL 598 GL Sbjct: 78 EGL 80
>SYH_CORDI (P60914) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 317 PHLLPQARVRVHQAHLHGQAEREARLQEVQTCTVGGTGQSKPVILRFMY 171 P L HQAHL G E + E T G G+S V+ + MY Sbjct: 24 PEFLGVRDTFAHQAHLAGYEHIELPIFEDTTLFARGVGESTDVVTKEMY 72
>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21| Length = 1629 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -3 Query: 401 PAVQAVRHHRRREQPHRSLPEGP*DLQGPHLLPQARVRVHQAHLHGQAEREARLQEVQTC 222 P Q + H+ + QP + + Q PQ +V QAH H QA+ +A+ Q+ Q Sbjct: 1563 PGQQHQQPHQAQHQPQQQQSQQQ-QAQAKQQQPQQQV---QAHAHAQAQHQAQQQQQQQR 1618 Query: 221 TVGGT 207 G+ Sbjct: 1619 QASGS 1623
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 29.3 bits (64), Expect = 9.5 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Frame = -3 Query: 473 PDRALRRP-GLDIPHRLRQPVGDDGPAVQAVRHHRRREQPHRSLPEGP*DLQGPHLLPQA 297 P +RRP PHR R P+G+D ++A++ ++ ++ GP + + + Sbjct: 1480 PPGFIRRPQAQQAPHRRRPPLGEDNIGLKALKPEAEVDEDGVAMCSGPEEGEAEETASAS 1539 Query: 296 RVRV-----------HQAHLHGQAEREARLQEVQTCTVGG 210 R ++ A L E E+ + +V TC G Sbjct: 1540 RCQLWPLNSSCGELPQAAMLTPPQECESEVLDVDTCGPDG 1579 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,633,950 Number of Sequences: 219361 Number of extensions: 1719251 Number of successful extensions: 5595 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5584 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
