Clone Information

BLAST Search Result

Clone Name	rbags12j23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK106179.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	194	3e-46
2	dbj\|AK059770.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	194	3e-46
3	gb\|BT009571.1\| Triticum aestivum clone wre1n.pk0021.e3:fis, full...	147	5e-32
4	gb\|AC138195.2\| Oryza sativa (japonica cultivar-group) chromosome...	121	3e-24
5	gb\|AC135793.4\| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1...	121	3e-24
6	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
7	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	121	3e-24
8	dbj\|AK061247.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	6e-10
9	gb\|AY107519.1\| Zea mays PCO078033 mRNA sequence	52	0.002
10	gb\|AC135258.2\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.037
11	gb\|AC147811.2\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.037
12	gb\|AC112208.3\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.037
13	ref\|XM_416865.1\| PREDICTED: Gallus gallus similar to short statu...	46	0.15
14	ref\|XM_477999.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.58
15	gb\|AY177404.1\| Secale cereale O-methyltransferase mRNA, complete...	44	0.58
16	gb\|AC025277.10\| Homo sapiens chromosome 16 clone CTD-3229J4, com...	42	2.3
17	gb\|AC068473.19\| Homo sapiens chromosome 18, clone RP11-567M16, c...	42	2.3
18	gb\|AC068910.45\| Mus musculus strain C57BL/6J chromosome 9 clone ...	42	2.3
19	gb\|AC096785.29\| Mus musculus strain C57BL/6J clone rp23-382i2 ma...	42	2.3
20	emb\|Z50860.1\|HSN76A1 Human DNA sequence from clone LL22NC03-76A1...	42	2.3
21	gb\|AF546189.1\| Contiguous genomic DNA sequence comprising the 19...	42	2.3
22	emb\|CT030124.12\| Mouse DNA sequence from clone RP23-100B15 on ch...	42	2.3
23	gb\|AC074314.29\| 433m13, complete sequence	42	2.3
24	ref\|XM_478005.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.0
25	emb\|CR786572.20\| Zebrafish DNA sequence from clone DKEY-258F14 i...	40	9.0
26	emb\|Z92844.3\|HS435C23 Human DNA sequence from clone RP3-435C23 o...	40	9.0
27	gb\|AC012588.14\| Homo sapiens chromosome 18, clone RP11-17A19, co...	40	9.0
28	gb\|AC090206.7\| Homo sapiens chromosome 18, clone RP11-349H17, co...	40	9.0
29	gb\|AC108935.5\| Homo sapiens BAC clone RP11-503L19 from 4, comple...	40	9.0
30	dbj\|AK163573.1\| Mus musculus adult male corpora quadrigemina cDN...	40	9.0
31	emb\|BX682555.6\| Zebrafish DNA sequence from clone DKEY-217L10 in...	40	9.0
32	gb\|AC152165.2\| Mus musculus BAC clone RP24-159A20 from chromosom...	40	9.0
33	dbj\|AK045822.1\| Mus musculus adult male corpora quadrigemina cDN...	40	9.0
34	gb\|BC049666.1\| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cD...	40	9.0
35	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
36	gb\|AC034099.16\| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, R...	40	9.0
37	dbj\|BA000028.3\| Oceanobacillus iheyensis HTE831 DNA, complete ge...	40	9.0
38	dbj\|AP005188.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
39	emb\|BX647085.1\|HSM807229 Homo sapiens mRNA; cDNA DKFZp686B01256 ...	40	9.0
40	dbj\|AP003916.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
41	gb\|AY110678.1\| Zea mays CL33606_1 mRNA sequence	40	9.0
42	emb\|CR388184.33\| Zebrafish DNA sequence from clone CH211-261O3 i...	40	9.0
43	ref\|NM_177265.2\| Mus musculus RIKEN cDNA 6330512M04 gene (633051...	40	9.0
44	dbj\|AP006364.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	9.0
45	emb\|AL603651.14\| Mouse DNA sequence from clone RP23-398J2 on chr...	40	9.0

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score =  194 bits (98), Expect = 3e-46
 Identities = 248/298 (83%)
 Strand = Plus / Minus

                                                                        
Query: 352  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 411
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1033 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 974

                                                                        
Query: 412  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 471
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 973  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 914

                                                                        
Query: 472  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 531
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 913  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 854

                                                                        
Query: 532  agcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagttaatg 591
            ||||||||  ||||||  ||||| ||||||||||||| |||||| || |||||||||| |
Sbjct: 853  agcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacg 794

                                                                      
Query: 592  actccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcacttga 649
            || ||||||   || || || |||| |||||| |||||||||| ||||||||||||||
Sbjct: 793  acaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcacttga 736

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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score =  194 bits (98), Expect = 3e-46
 Identities = 248/298 (83%)
 Strand = Plus / Minus

                                                                        
Query: 352  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 411
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1038 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 979

                                                                        
Query: 412  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 471
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 978  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 919

                                                                        
Query: 472  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 531
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 918  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 859

                                                                        
Query: 532  agcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagttaatg 591
            ||||||||  ||||||  ||||| ||||||||||||| |||||| || |||||||||| |
Sbjct: 858  agcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacg 799

                                                                      
Query: 592  actccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcacttga 649
            || ||||||   || || || |||| |||||| |||||||||| ||||||||||||||
Sbjct: 798  acaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcacttga 741

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>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  147 bits (74), Expect = 5e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                       
Query: 495 gcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttgagatggtgg 554
           ||||||||| || ||||| |||||||| |||||||||||||| ||  | |||| ||||||
Sbjct: 248 gcaatcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctgagctggtgg 189

                                                                       
Query: 555 gacggtgtggaacaggtcacccgcgacatagttaatgactccatcagctggggctttttc 614
           |||||| ||||| |||||||| |||||||||||||  || ||||||  |||| |||| ||
Sbjct: 188 gacggtatggaagaggtcaccagcgacatagttaacaacaccatcacttgggactttctc 129

                                                     
Query: 615 gaccacctttggaaggtccaacacagtgcacttgatgtgcgg 656
           || |||||||||||||||||||||| |||||||||| |||||
Sbjct: 128 gatcacctttggaaggtccaacacattgcacttgatatgcgg 87

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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                          
Query: 352    accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 411
              |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 123040 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 122981

                                                                          
Query: 412    ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 471
              |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 122980 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 122921

                                                       
Query: 472    ctgcactgggctaggattttcacgcaatcctcatcactcca 512
              |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 122920 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 122880



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                          
Query: 528    cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 587
              ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 119697 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 119638

                                                                          
Query: 588    aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 647
              || ||| ||||||   || || || |||| |||||| |||||||||| ||||||||||||
Sbjct: 119637 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 119578

                
Query: 648    ga 649
              ||
Sbjct: 119577 ga 119576



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 136/167 (81%)
 Strand = Plus / Minus

                                                                         
Query: 331   cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 390
             |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 64375 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 64316

                                                                         
Query: 391   attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 450
             ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 64315 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 64256

                                                            
Query: 451   tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 497
             |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 64255 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 64209



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 624   tggaaggtccaacacagtgcacttgatgtgcgg 656
             ||||||||||| ||| |||||||||||||||||
Sbjct: 63902 tggaaggtccagcaccgtgcacttgatgtgcgg 63870

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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 352  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 411
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 8789 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 8730

                                                                        
Query: 412  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 471
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 8729 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 8670

                                                     
Query: 472  ctgcactgggctaggattttcacgcaatcctcatcactcca 512
            |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 8669 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 8629



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                        
Query: 528  cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 587
            ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 5446 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 5387

                                                                        
Query: 588  aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 647
            || ||| ||||||   || || || |||| |||||| |||||||||| ||||||||||||
Sbjct: 5386 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 5327

              
Query: 648  ga 649
            ||
Sbjct: 5326 ga 5325



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 481   gctaggattttcacgcaatcctcatcactccaa 513
             ||||||||||||||||||||||  |||||||||
Sbjct: 62050 gctaggattttcacgcaatcctggtcactccaa 62018



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 625   ggaaggtccaacacagtgcacttga 649
             |||||||||| ||||||||||||||
Sbjct: 60606 ggaaggtccagcacagtgcacttga 60582

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 352      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 411
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11490748 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11490807

                                                                            
Query: 412      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 471
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11490808 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11490867

                                                         
Query: 472      ctgcactgggctaggattttcacgcaatcctcatcactcca 512
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11490868 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11490908



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                            
Query: 528      cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 587
                ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 11494091 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11494150

                                                                            
Query: 588      aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 647
                || ||| ||||||   || || || |||| |||||| |||||||||| ||||||||||||
Sbjct: 11494151 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 11494210

                  
Query: 648      ga 649
                ||
Sbjct: 11494211 ga 11494212



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 331      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 390
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11549413 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11549472

                                                                            
Query: 391      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 450
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11549473 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11549532

                                                               
Query: 451      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 497
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11549533 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11549579



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 624      tggaaggtccaacacagtgcacttgatgtgcgg 656
                ||||||||||| ||| |||||||||||||||||
Sbjct: 11549886 tggaaggtccagcaccgtgcacttgatgtgcgg 11549918



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 481      gctaggattttcacgcaatcctcatcactccaa 513
                ||||||||||||||||||||||  |||||||||
Sbjct: 11437487 gctaggattttcacgcaatcctggtcactccaa 11437519



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 229      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 284
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11294528 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 613     tcgaccacctttggaaggtccaacacagtgcacttgatgtgcgg 656
               |||| |||||| || ||||||| ||| |||||||||||||||||
Sbjct: 7138295 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgg 7138338



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 232      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 290
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11353889 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11353947



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 625      ggaaggtccaacacagtgcacttga 649
                |||||||||| ||||||||||||||
Sbjct: 11438931 ggaaggtccagcacagtgcacttga 11438955



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 473      tgcactgggctaggattttcacgcaatcctca 504
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11352249 tgcattgggctaggatcttcacgtaatcctca 11352280

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 352      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 411
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11569937 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11569996

                                                                            
Query: 412      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 471
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11569997 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11570056

                                                         
Query: 472      ctgcactgggctaggattttcacgcaatcctcatcactcca 512
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11570057 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11570097



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                            
Query: 528      cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 587
                ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 11573280 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11573339

                                                                            
Query: 588      aatgactccatcagctggggctttttcgaccacctttggaaggtccaacacagtgcactt 647
                || ||| ||||||   || || || |||| |||||| |||||||||| ||||||||||||
Sbjct: 11573340 aacgacaccatcattgggcgccttgtcgatcaccttgggaaggtccagcacagtgcactt 11573399

                  
Query: 648      ga 649
                ||
Sbjct: 11573400 ga 11573401



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 331      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 390
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11628602 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11628661

                                                                            
Query: 391      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 450
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11628662 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11628721

                                                               
Query: 451      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 497
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11628722 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11628768



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 624      tggaaggtccaacacagtgcacttgatgtgcgg 656
                ||||||||||| ||| |||||||||||||||||
Sbjct: 11629075 tggaaggtccagcaccgtgcacttgatgtgcgg 11629107



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 481      gctaggattttcacgcaatcctcatcactccaa 513
                ||||||||||||||||||||||  |||||||||
Sbjct: 11516676 gctaggattttcacgcaatcctggtcactccaa 11516708



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 229      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 284
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11373717 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 613     tcgaccacctttggaaggtccaacacagtgcacttgatgtgcgg 656
               |||| |||||| || ||||||| ||| |||||||||||||||||
Sbjct: 7204266 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgg 7204309



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 232      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 290
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11433078 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11433136



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 625      ggaaggtccaacacagtgcacttga 649
                |||||||||| ||||||||||||||
Sbjct: 11518120 ggaaggtccagcacagtgcacttga 11518144



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 473      tgcactgggctaggattttcacgcaatcctca 504
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11431438 tgcattgggctaggatcttcacgtaatcctca 11431469

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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 487 attttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttga 546
           |||||||| |||||||| ||||||||   ||| ||||||||||||||||| ||  |||||
Sbjct: 915 attttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttga 856

                                                    
Query: 547 gatggtgggacggtgtggaacaggtcacccgcgacatagtt 587
           |  ||||||| || | |||||| ||||||||| ||||||||
Sbjct: 855 gcaggtgggatggcgcggaacatgtcacccgctacatagtt 815

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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 346 gtgttcaccatcatgagcatatccatcaggagttgggc 383
           |||||||||||||||||||| |||||||| || |||||
Sbjct: 991 gtgttcaccatcatgagcatgtccatcagcagctgggc 954

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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 613   tcgaccacctttggaaggtccaacacagtgcacttgatgtgcgg 656
             |||| |||||| || ||||||| ||| |||||||||||||||||
Sbjct: 44260 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgg 44217

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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 613   tcgaccacctttggaaggtccaacacagtgcacttgatgtgcgg 656
             |||| |||||| || ||||||| ||| |||||||||||||||||
Sbjct: 51515 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgg 51558

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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 229   tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 284
             ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 80886 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 232    gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 290
              ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 140247 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 140305



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 473    tgcactgggctaggattttcacgcaatcctca 504
              |||| ||||||||||| |||||| ||||||||
Sbjct: 138607 tgcattgggctaggatcttcacgtaatcctca 138638

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>ref|XM_416865.1| PREDICTED: Gallus gallus similar to short stature homeobox isoform
           a; growth control factor, X-linked; pseudoautosomal
           homeobox-containing osteogenic gene (LOC418669), mRNA
          Length = 2100

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 439 tttcccccctcctcccgcggagg 461
           |||||||||||||||||||||||
Sbjct: 534 tttcccccctcctcccgcggagg 556

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>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 490 ttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagca 535
           |||| ||| |||||||||||||||  |||||| |||| ||||||||
Sbjct: 821 ttcatgcagtcctcatcactccaatcgtgtaggacaaacttgagca 776



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 625 ggaaggtccaacacagtgcacttgatgtgcgg 656
           |||||||||| ||| ||||||||||| |||||
Sbjct: 674 ggaaggtccagcacggtgcacttgatatgcgg 643

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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 523 acaagcttgagcatcaccacttgagatggtgggacggtgtggaacaggtc 572
           |||||||||||||||||| | ||||    ||||||||||||||| |||||
Sbjct: 844 acaagcttgagcatcaccgcctgagcctttgggacggtgtggaagaggtc 795

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>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   gaaaaataagcacctccttta 203
             |||||||||||||||||||||
Sbjct: 69396 gaaaaataagcacctccttta 69416

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>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 63    aaacacatacatatgccaatataaa 87
             |||||||||||||||| ||||||||
Sbjct: 14370 aaacacatacatatgcaaatataaa 14346

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>gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone rp23-9g9, complete
              sequence
          Length = 169984

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     aatataaagtgctttaatact 100
              |||||||||||||||||||||
Sbjct: 166964 aatataaagtgctttaatact 166944

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>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 201304

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    aatataaagtgctttaatact 100
             |||||||||||||||||||||
Sbjct: 64419 aatataaagtgctttaatact 64399

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>emb|Z50860.1|HSN76A1 Human DNA sequence from clone LL22NC03-76A1 on chromosome 22, complete
             sequence
          Length = 39246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 543   ttgagatggtgggacggtgtg 563
             |||||||||||||||||||||
Sbjct: 31689 ttgagatggtgggacggtgtg 31709

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>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family
              from Zea mays, complete sequence
          Length = 116115

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 300    cttaaatagctcacaccagtg 320
              |||||||||||||||||||||
Sbjct: 109765 cttaaatagctcacaccagtg 109785

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>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
             sequence
          Length = 203615

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    aatataaagtgctttaatact 100
             |||||||||||||||||||||
Sbjct: 38302 aatataaagtgctttaatact 38282

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>gb|AC074314.29| 433m13, complete sequence
          Length = 209644

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     aatataaagtgctttaatact 100
              |||||||||||||||||||||
Sbjct: 155135 aatataaagtgctttaatact 155115

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>ref|XM_478005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 625 ggaaggtccaacacagtgcacttgatgtgcgg 656
           |||||||||| ||| ||||||||||| |||||
Sbjct: 644 ggaaggtccagcaccgtgcacttgatatgcgg 613

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>emb|CR786572.20| Zebrafish DNA sequence from clone DKEY-258F14 in linkage group 8,
             complete sequence
          Length = 137717

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   cctttatttttacctttaaa 217
             ||||||||||||||||||||
Sbjct: 20649 cctttatttttacctttaaa 20630

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>emb|Z92844.3|HS435C23 Human DNA sequence from clone RP3-435C23 on chromosome Xp21-22,
             complete sequence
          Length = 158849

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   cctttatttttacctttaaa 217
             ||||||||||||||||||||
Sbjct: 98669 cctttatttttacctttaaa 98688

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>gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, complete sequence
          Length = 148738

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    aacacatacatatgccaatataaa 87
             |||| |||||||||||||||||||
Sbjct: 37283 aacaaatacatatgccaatataaa 37306

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>gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, complete sequence
          Length = 91609

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    aacacatacatatgccaatataaa 87
             |||| |||||||||||||||||||
Sbjct: 59103 aacaaatacatatgccaatataaa 59126

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>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence
          Length = 133531

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   cctcctttatttttaccttt 214
             ||||||||||||||||||||
Sbjct: 58662 cctcctttatttttaccttt 58681

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>dbj|AK163573.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230384C07
           product:hypothetical Interferon-induced transmembrane
           protein containing protein, full insert sequence
          Length = 1159

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 cgggtagacctcgatgactg 250
           ||||||||||||||||||||
Sbjct: 451 cgggtagacctcgatgactg 432

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>emb|BX682555.6| Zebrafish DNA sequence from clone DKEY-217L10 in linkage group 3,
             complete sequence
          Length = 69193

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   gaacattcccttagaaaaat 189
             ||||||||||||||||||||
Sbjct: 15225 gaacattcccttagaaaaat 15244

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>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence
          Length = 194519

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     acatgacaaacacatacata 75
              ||||||||||||||||||||
Sbjct: 172945 acatgacaaacacatacata 172964

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>dbj|AK045822.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230312J21
           product:hypothetical protein, full insert sequence
          Length = 3235

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 cgggtagacctcgatgactg 250
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431

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>gb|BC049666.1| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cDNA clone MGC:58491
           IMAGE:6534368), complete cds
          Length = 1184

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 cgggtagacctcgatgactg 250
           ||||||||||||||||||||
Sbjct: 439 cgggtagacctcgatgactg 420

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 625      ggaaggtccaacacagtgcacttgatgtgcgg 656
                |||||||||| ||| ||||||||||| |||||
Sbjct: 16295257 ggaaggtccagcaccgtgcacttgatatgcgg 16295288



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 625      ggaaggtccaacacagtgcacttgatgtgcgg 656
                |||||||||| ||| ||||||||||| |||||
Sbjct: 16264584 ggaaggtccagcacggtgcacttgatatgcgg 16264615



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 625      ggaaggtccaacacagtgcacttgatgtgcgg 656
                |||||||||| ||| ||||||||||| |||||
Sbjct: 16220133 ggaaggtccagcacggtgcacttgatatgcgg 16220102

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>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete
             sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   cgggtagacctcgatgactg 250
             ||||||||||||||||||||
Sbjct: 36179 cgggtagacctcgatgactg 36160

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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 382     gcttcaaacattactggccctaag 405
               |||||||||||| |||||||||||
Sbjct: 1998540 gcttcaaacatttctggccctaag 1998563

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>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0473C09
          Length = 141066

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 625  ggaaggtccaacacagtgcacttgatgtgcgg 656
            |||||||||| ||| ||||||||||| |||||
Sbjct: 1313 ggaaggtccagcaccgtgcacttgatatgcgg 1344

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>emb|BX647085.1|HSM807229 Homo sapiens mRNA; cDNA DKFZp686B01256 (from clone DKFZp686B01256)
          Length = 1979

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 gaccacctttggaaggtcca 634
           ||||||||||||||||||||
Sbjct: 103 gaccacctttggaaggtcca 122

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>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1634_H04
          Length = 151699

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 625    ggaaggtccaacacagtgcacttgatgtgcgg 656
              |||||||||| ||| ||||||||||| |||||
Sbjct: 115695 ggaaggtccagcaccgtgcacttgatatgcgg 115726



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 625   ggaaggtccaacacagtgcacttgatgtgcgg 656
             |||||||||| ||| ||||||||||| |||||
Sbjct: 85022 ggaaggtccagcacggtgcacttgatatgcgg 85053



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 625   ggaaggtccaacacagtgcacttgatgtgcgg 656
             |||||||||| ||| ||||||||||| |||||
Sbjct: 40571 ggaaggtccagcacggtgcacttgatatgcgg 40540

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>gb|AY110678.1| Zea mays CL33606_1 mRNA sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 466 gcctttctgcactgggctaggattttcacgcaatcctcatcact 509
           ||||| ||||| | ||| ||||| |||||||| |||||||||||
Sbjct: 570 gccttcctgcagttggcaaggatcttcacgcagtcctcatcact 613

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>emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 in linkage group 8,
              complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 201    ttatttttacctttaaagcacaat 224
              ||||||||| ||||||||||||||
Sbjct: 106666 ttatttttaactttaaagcacaat 106689

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>ref|NM_177265.2| Mus musculus RIKEN cDNA 6330512M04 gene (6330512M04Rik), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 cgggtagacctcgatgactg 250
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431

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>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170,
             complete sequence
          Length = 101172

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tgaagcaactaatctttata 146
             ||||||||||||||||||||
Sbjct: 82781 tgaagcaactaatctttata 82800

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>emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chromosome 7, complete
              sequence
          Length = 205942

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    cgggtagacctcgatgactg 250
              ||||||||||||||||||||
Sbjct: 164428 cgggtagacctcgatgactg 164409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,865,128
Number of Sequences: 3902068
Number of extensions: 5865128
Number of successful extensions: 111311
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110961
Number of HSP's gapped (non-prelim): 343
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result